TCONS_00012415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012415
Unique NameTCONS_00012415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012415 ID=TCONS_00012415|Name=TCONS_00012415|organism=Clytia hemisphaerica|type=transcript|length=1987bp
GTCAACAGTAATGACGTCCAAAAAAAGATTGCCGGATCAAAAACAATACC
GCGTAGGAGTGCTCAAACCCTGTTGGGAATACCATATAATTGCTTGGAAT
GTACTCCGTGGCGGAGATGTTTTGATGTTAGGAGACATCTAACTCGAAGG
TAACATACTTTCGGACGACACGACGTTGTGCAGACGACAGCTAGACAGAA
CTTTCACCGATATTTGACGACCAAATACAACAACCATGGCTCTTTTCCTC
AGAAAACACACAGGAACTCCTTTCAAACATGCACAAGTATTATCCCGATC
ATTTGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTCCAACCGGCTG
AATTCAAGGGAATGCCATACGATGAAGCACGTGCTGCACACGCCAAAAAC
CTTTTCCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGACCTGTCTA
TCTCACTCAGGGTCATATGCAATGGTTGTGGGATAGTGAAGGCAAACGAT
ATTTAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGACACTGTCAC
CCGAAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGCATTG
CTCAAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAATTGT
TGACAAAATTGCCCGAAAAATATAACCGTGTATACTTTGTGAACAGTGGA
TCAGAAGCGAATGATTTCGCTATGACCATGATGAGAGTTTACACTGGAAG
CTGGGATATCATCGGATTGAGAAACGCTTACCACGGAGCCAGTCCCACCA
CTCTTGGCATCACCAACATGGGTCAATACAAATTCCCAACTCCACAAAAC
TTTGGTTGTCACACTattcCAAACCCAGATGTTTACAAAGGAATTTGGGG
CGGAAAGAATTGCCGCGATTCTCCCGTTCAAGCTGACAGAGATTGTGATT
GTGCTGAAGGAGTATGTGAGGCCACAGACCTTTACCTCGGTCAATTGGAA
GATGTGTTGACCAATGTCACACCTCCAAAAGTTGCCGGATTCTTTGGTGA
ACCCATCCAGGGTGTCGGTGGTAGCGTTCAATACCCACGTGACTTTTTAC
AAAAGACCTACGAGAAGATTCACGCACGTGGTGGACTTTGTGTGGCTGAT
GAGGTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGGGGATTCCA
AGGTTCTGGACTCAACCCTGACATCATCGTGTGCGCCAAGACCATCGCTA
ACGGATTACCAATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCA
ATGAACGTTGCTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTG
CGCCGCTGCTATCACCGCTCTCGATGTTATCGACGAAGAAGGTTTACAAG
AGAACTGTCAACGTGTTGGAACATATTGTTTGGAAGAACTATCGAAGATC
CGTGATGATTACGAGATTGTCGGGGATGTCCGTGGTAAAGGATTGATGAT
CGGTATCGAAATGGTCGCCGATAAAAAGACGAGAGCACCATTGCAACCAG
AGAGAGTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTT
GGTAAAGGTGGACGATTTGGACAGGTTCTTCGTATCAAACCACCAATGAA
CGTCACTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTA
TCGAAGAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACG
TTGAACATACAATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTG
TATTCTGGTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTC
CTTATTGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACA
ggcaaaaaataaacaaagggAAGCATTATTCAGCACAGTTAAgtttataa
ttttaaatcacCACGCCATTCCAAAAAtgctcattta
Run BLAST on NCBI

transcript from alignment at sc0000144:295681..304760+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012415 ID=TCONS_00012415|Name=TCONS_00012415|organism=Clytia hemisphaerica|type=transcript|length=9080bp|location=Sequence derived from alignment at sc0000144:295681..304760+ (Clytia hemisphaerica)
GTCAACAGTAATGACGTCCAAAAAAAGATTGCCGGATCAAAAACAATACC
GCGTAGGAGTGCTCAAACCCTGTTGGGAATACCATATAATTGCTTGGAAT
GTACTCCGTGGCGGAGATGTTTTGATGTTAGGAGACATCTAACTCGAAGG
TTATCAATGCCATCAATAATTCATCTCGAGAAAAGAAGGGGTTTAAGACA
GCAAGCTTGCTATTATACTTTTTACTAGCTGATATCGGATATCTCAAAGT
TGAgggaaaacaaaaagattttgcAATACTttccgaaaatcttttttgag
atCTGCTTACACACTCTTGTTTAAGGTAACATACTTTCGGACGACACGAC
GTTGTGCAGACGACAGCTAGACAGAACTTTCACCGATATTTGACGACCAA
ATACAACAACCATGGCTCTTTTCCTCAGAAAACACACAGGTATATTCCGC
TTTTCACTATTTTAGTTCGAGAAAGGTTGGTGGGATGGGAATATTTGGGT
TTTAAGCCAGGCTGgctcttttgaaatatttctgtTGCTTTGAGTTTTGA
TGTAATACTGTACAGTTTTGAGTTGTAGCTGCATATGGTAATACACTTAA
AATTTTCCttcttctaaaattttcataGGAACTCCTTTCAAACATGCACA
AGTATTATCCCGATCATTTGCAGTTCGTGGTGTTGAAATGCCTTCAACTG
ATTTCCAACCGGCTGAATTCAAGGTATCATTTTACTGTATGTTTGTCTTC
AATAAAGGTTTCTGTCTTGGTAGATTCGAAGTGTATGTTATATTTGCAAt
agtttgaaaatttgtgtCTAGTAGGTCTCGCTTGTGTTCTTTCAACcgta
tttttcttcaaaacttttgTAAATTTCTGTTATATCATTGCGAACATGAA
GTAATTAGATAGACGGGAGTAATGGAGCTATGGAAAAGCAAATTTTGCTG
AGTCATTATGTCAAatgatttgcataatttttcatacattcaacttatta
tttttttgttatcaACTCAATTATTTTCTTTACTGCTAAATCACAAAACG
CTTATCTAATCATGGTATCTTTTCACGGCTTTCACGGCAAATCCTACTCG
TACTATAACAACACAAAAACTTCATATCGAAActcaaacatttcaaaatt
ttactagTAGAAAAACAAAGTGCTGANAATCCTACTCGTACTATAACAAC
ACAAAAACTTCATATCGAAActcaaacatttcaaaattttactagTAGAA
AAACAAAGTGCTGACCGCAATAGAGAAAACATTCCTAGTTATTTTTTGCT
TGACTAATAAGAACTGCTATTTACACAAGCAACGATTCCCTTTTTTGGAT
AATCGAGGATTAAGCAATAAAGGAAGGATGGGGCTGGCCTGCATGTGGCA
AACGATCTAGGCGGAAAATGACCACCATCATACCCTTGACTTTTTACCCT
TGACAGTAAATTTGACAATTTACTGATTGAAATATTCCAGTCATATGTAA
TCATTTTGAAGCTTAAAAATCATGCGCTCACGATTATTTGTTTCAAAATC
ATGTAACTATGGTTCTCCTGGGGACATACACGCTGACGCTCGCTAATTTG
GACTTGGACGCACGGCGAGAATCTTATTTCCTCGAATTACAAAGAGATTC
GAATTGTAGAAAGCATTTTAGAAGGGTTTTTCTTTGCCAGGGACTGCAaa
taagttcgaataagcgaaagTCTACTGTActtcaaaaaggttttttcctc
cagaaaatatgaaatacaTAGATAGGCTGAAGTATTTTTCTAATGAGTAT
GAAAATCTTACGTCAGCTGCTGTGTTCAGGTGACCTCCTTAGAAAGGGTC
AGCAGAAAATTTCCTCTAGTAAAAATACTGAGtgtccaattttccattgt
tcgGTGGGCTATGCAATATTTACTTTAAAGACGTGATTGCGAATTTCGAG
GAGAAATTTGATATGGGTCAGAACTCTGTTTGTCAACTGCTTTTAGAAAA
GTACATGAAGTTTGTTGACAAGTCATATTCATATGCTGATAAGCCAAAAT
ACAAAAAGGAGTACTCGAGATATCCCGATTAAAACCTTAAGATTACAGAT
CGCCGATGAGATTGCCAGAATCTTGAAATTCTTTCTTCAAGGGCAAtgaa
atctttttctcaaaactttatttttagctCTACTAtattttaccttccaa
aaaatTACGATGCAAAGAATAATTgtccttgaaaatttgaaatattcctC
TTCGTAAAGTTTCATTCAATTCTTTATACAATTTTGAACGCTTTTTTAAG
TGGTCAATTCAATCCTTGGTACTGTAGGCTTTAATACTTAACGAATCCCT
AATCGAATATGATTCCTTGAACTATTTCAGGGAATGCCATACGATGAAGC
ACGTGCTGCACACGCCAAAAACCTTTTCCCTCATGTCTCCGAACGTATGT
TGTTATACAAAAGACCTGTCTATCTCACTCAGGTAAGCGtgaaataaaat
attaatttgtTAGTCTGAAGGTGACTGGCCCAGCTTCGGGCCTTTCACTA
GCATGTCAATGTCCGTGATATGCTGTATTTCCCTTTTTCGAAGAAGCGGT
GCTTTGttaatttaagtttattttgaaaaaaacggcgcCTTGTAACAATC
AACGAACAAATATTTGACTATTCCTATGTTGCTTCGGCTTCTTGTTATTT
GTTGGagagcattttttcgaatttcgaataTAAACACCTTAAATACCTAC
CGGATCCGccacaaaaaaagtttctctctttaaaaccaattttctcgaat
tctaaaaatttcgaaagaatcattcctatttcattggaaagaaaaaagat
aaacttaaattttgatagtttgtttattaaatttgattctttgaatcaaa
aatgttcaattgaataaaaaagttgctTTCAGAAAGTGCTTGAGAACGTT
AAAAATCGGTCTATCAAGTTAAACAAAGGGAAACCTTtttgtggtgcacc
cggtagcAATTTCAATATAAACTGTCCACCATCCCCGGATTCTTTAAACA
GTTGATTCTTGATTTTTAGGGTCATATGCAATGGTTGTGGGATAGTGAAG
GCAAACGATATTTAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGA
CACTGTCACCCGTAAGTTAAGAAAATAATATCTTGCTTCTCGAATACGAC
ATTTGGTAGTCCATCTCGTTCATTTTTTGATAGATGATTCCCCCTATTGG
CACGAATTCAAAGCAACGTTTAACAATAACGTTTACACATTCTTCATTTT
ACTTCAAAACGCTAGAAAGGTATCACCGGATCATTAATTCAATGTTGCTA
CAACTTATAGGTATTTATACATAATTAAGGTCTGGATGGGAAAAATAATC
ACCCGCTAGGTTCTTGTGGTCATCTTTATCAGGAAACTGGGCTACAGTAA
CTAATAACCAGCATCGACTATCGAATATTTTGAGTGACTTCAGATTTCTC
TTTTAGGAAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGC
ATTGCTCAAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAA
TTGTTGACAAAATTGCCCGAAAAATATAACGTAAGAAAAGCCTTTCTTCT
AAGCCTTATCATTAGCTTTGTAAAAAGGGTATCCCTGTAAGCCGAGAAAT
TTCATGACAGTCTCCTCTGTTATTTTGAGCtagattttcaagttttgccT
GATTTGGTTTGGATACAAAAATTCTATCTTTCCAAAAAGGTTGTCTATCA
TAGTAAATAACAATGACGGGAGGCCGAAAATTCGGTAGAACATTCAACAA
TCCAAAATGTTAATGTCTTTCTACTTATCCCTTAAATATTTTCCCTTTCA
TTCTACAGCGTGTATACTTTGTGAACAGTGGATCAGAAGCGAATGATTTC
GCTATGACCATGATGAGAGTTTACACTGGAAGCTGGGATATCATCGGATT
GAGGTATGATGTGTAGATCTTTATAGAAGAGTTCTTTCAGCTTTGATAAG
GTTATGTAACTTACCGTGAAATCCACCATTATTGAATTTCTCCCAATCAA
AAGTTTTTCTACCGGTATATGTGCTATTCGAAATGCATTAAACTCAGAAA
ACGTGCAAAAGAATACCTGCACTAAATCAATAGTCATCCATCTCGCTAGA
TTTAAAATGGTAATGAGTGACGATAAAGGCTCATCCCATTACTAATATTC
TTATGACCTTTAGACTTCCAATAGGCCCTAATACCCCTCAAACAAGTATT
TCTTCATTTCTActctatttttgaaatatttccttaTCATTTTCAGAAAC
GCTTACCACGGAGCCAGTCCCACCACTCTTGGCATCACCAACATGGGTCA
ATACAAATTCCCAACTCCACAAAACTTTGGTTGTCACACTGTAAGAATCG
GCAATGATCATTTTTTCGCCATCCGAatgctctctctctctctttgcAGT
CTGTTGAAAATTTTCGCATGCATGCTCCTAACCTCCTAACCTCATCAAAA
TTATACCTCTGAATCTAAATAGACCAACATaatatatttcccttttttca
tttcagattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGGAAAGAA
TTGCCGCGATTCTCCCGTTCAAGTatgaattttaacaaaattaactttaa
aatttAACTAAATTTTACTGCTACATAGATTCGTTCAAGAAATAACTTTC
AATATGCAACAATAAATTTAgactagccataattttcattaaagtgccac
cgcagaataacgatcaaataagttgttgaatttggaaagaaatgttactg
atagccgatagtctacaaatattagcaatttgtgtccatctcatagatat
cttcttatagagataagataaagttatttatctgttttttttgtcatctc
NACGATGTGTAGATCTTTATAGAAAAGTTCTTTCAGCTTTGATAAGGTTA
TGTAACTTACCGTGAAATCCACCATTATTGAATTTCTCCCAATCAAAAGT
TTTTCTACCGGTATATGTGCTNCAATGGCTTGTTTATGtcatactaaacg
ctactgtGCTAAACTGCCATTTTACTGTAATAGTCAAACGACAAGTCTTA
gaaaggataaaaatttctaatttccgttgctcagagcggttaataactag
ttgtggtttaaatagggaatttcccaacaaaaaaggaatttcccttaatt
cgactccctgaggtaataaaaaaagacatatagaggtttgaaaatgggta
atcaaattaaaaaaaatccggaaaagtgtttttaatgatgataaaacaat
agaaatacagtcaagctaagaatgttaccggtacaccatttaaccggaac
taaaatactgaNCTCTCTTTGCAGTCTGTTGAAAAAACCTCCTAACCTCA
TCAAAATTATACCTCTGAATCTAAATAGACCAACATaatatatttccctt
ttttcatttcagattcCAAACCCAGATGTTTACAAAGGAATTTGGGGCGG
AAAGAATTGCCGCGATTCTCCCGTTCAAGTatgaattttaacaaaattaa
ctttaaaatttAACTAAATTTTACTGCTACATAGATTCGTTCAAGAAATA
ACTTTCAATATGCAACAATAGATTTAGATTAGATTGCCCACCAATGTGGT
TCATAATAATCTCTATTATTATAATCTACTATTTTTTAGGCTGACAGAGA
TTGTGATTGTGCTGAAGGTATTTAATTCTTTTTCTAAACGAGTTCAGAAT
ATTTTGCCATTTCGAGGGTATTTTAgcgttttgcagaatttaaaaTTCAG
GCGAGAATGACATTTCTAGGCTTTCTACTTTACCTAATgggatatttcga
tttgggaggagTATAATGGCTTCCagactatattctcagcctaggGGGAC
CATAAAtaagcttttggatcctcagaccAGAGTCTTAAGTCTCCTGttta
aactcagagttaaaactgtACTTTCCAACCCTAAGTTAAGGCACTTAAAA
CTACTtgccctttttttaattttgcaagGAAATTCTTTTTGTGCAAAATG
TTATAGGCCATAGATAGTTTTGTGTACATAGAAAAATTAGTGAAATGGGA
ATATTAAAGAACATAGGATCCCAAAGTAGTCAAACTACTGGCCAAAATTC
CTCTACTTTTATCTTTGTCTTTCAGGAGTATGTGAGGCCACAGACCTTTA
CCTCGGTCAATTGGAAGATGTGTTGACCAATGTCACACCTCCAAAAGTTG
CCGGATTCTTTGGTGAACCCATCCAGGTcagatttttgttttaaatttga
taaCTTAACTTGCCTTTTCAgattaaaactttcttttctccataactttt
tttttgctgagtaTGAACTGTTTATTTAAAAACACAGCTTCATTAGCTAA
GCCATGTATcattgatccagtaaaaaatctgtttttccagaatgaaacaa
tgaaaatatagtTTACCAATGGGGAATTAGTTTCAGGATCTTTTAAGCGA
CTATTACCGTTGGGGTCTTTATTGCACAGGAATCTTTATAACAAGTTAGC
TACTTATACTAAATTGGCGTTTTTCTGATCATATCATGTAGGGTGTCGGT
GGTAGCGTTCAATACCCACGTGACTTTTTACAAAAGACCTACGAGAAGAT
TCACGCACGTGGTGGACTTTGTGTGGCTGATGAGGTAgccatttttttat
ttccaaatttGTTTACACATTCATTGTATAGTTCTTTATTCACCATTTCC
CATGCTTTCGTGTAAACATTTCAAAGTCAATTATTCTGTCATTCACCAAA
ATCCATCCGGATTCATATCTTATAGTTTcatcagaaaattattttgcacA
GAAGTAATCTATTATAATATCTATAGAATTTAGTAAATGTTATTTGTTCT
CCTTCAAAAAGGTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGG
GGATTCCAAGGTTCTGGACTCAACCCTGACATCAGTAAGTGATTCGCTCT
CCTGGTTTCTTTCTAATTCTTGAAACGGAAATTTACAATTAATATCATAA
CATTTCCTGATAAATTCAGTCAGGCTAAcaataaaagataaaagattTAG
GCTTTAACGGGTGGTCAGATCTGAGATTTAGTGTGAATTAATAAACCAGA
TACTCTGGACGGGTTTCATAGAGTTTTTTCGATAAAGTGAAGTATTATAT
TTACTTACTTGTTGTTCACAGTCGTGTGCGCCAAGACCATCGCTAACGGA
TTACCAATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCAATGAA
CGTTGCTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTGCGCCG
CTGCTATCACCGCTCTCGATGTAAGCTCTCTCTCATGGAATCATTCAATT
AAGGTTACATACCAGGTTGATTTCATGGATTATGTTAACAGTTTTTCTCT
GACCGCAATACTTGTTCGTCTGATGATTTCCAATTACTTTAAACTCACGA
GTGAACTTTTTTTCTGAcgccaaaacttttttttagaaTTAATACTCGAT
TAAAAGCAATTACCTGATTTGATTAGATCCCTTGAATGGTCTTGAGTTCA
GTTACAGTTGCACAAATAATGTGCTGAACCTTTCTACGGGATGTAAGACA
GCATAAAAATTGGCACCTTTACCAGTTTCCCAATATTCCGTTTCTATTTT
GTGGCGATACGCCTTGTTAATAAAGGCAGTTTCATAACGACGTTGTTTTC
ATTGTAGGTTATCGACGAAGAAGGTTTACAAGAGAACTGTCAACGTGTTG
GAACATATTGTTTGGAAGAACTATCGAAGATCCGTGATGATTACGAGATT
GTCGGGGATGTCCGTGGTAAAGGATTGATGATCGGTATCGAAATGGTCGC
CGATAAAAAGGTATGCGTAAAGTTTGGTATGTCAGTTCAGTCGATATTAT
CCTCCTTGTCTCCTTGTGTATTCAAATCTCAATCCTCTGTAAGGTCTATA
CCGACTTAATAGTTGCTTACGGATTACTATCAAAAGTATGTTAAATTTCT
ACAATAAAGGTTACCAATAATTTCACAATTATACCCTTTTCGAAGATAAT
GAGGTTCATTCTTTATTCACTTTCCAGACGAGAGCACCATTGCAACCAGA
GAGAGTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTTG
GTAAAGGTGGACGATTTGGACAGGTAGATTTTCTTCTCATCATGCTTTGA
TCTTTGTTGACCACCTCCTAGTCAAAcaaacatttttcattttgatgtgT
CTGGTTTAAGGTCTTGTTTACCAATAGATCATCCACGTCGCAAATTAAGG
ATGTAGCTCATGCACACTCCGTCGACTTAGTTATTGTACGTGATTAAAAA
TTAGCAGCAACTTTGGTTCAGTGCGTTATAGTTGCACCAAAAGTTTCAGA
ACTTTTATGTCTCATGGTCTAATAAAAACTGGAGCAAGAATTCATGTTTC
TTCGAATGTCAAAGAGAGTCGAAATTTAAGAAGTATGACTGTTTCTTCAC
TAGTTTGAATTACCTTATTAACTCGAAACTGGAATTATAGCGTCCACTGT
GTCTTGTAGAAATTAGTTGATTGCCCTAAATGACCAGAGTTGCAATCAAA
TTATGTTTTCCATTCAGGTTCTTCGTATCAAACCACCAATGAACGTCACT
AAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTATCGAAGA
ACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACGTTGAACA
TACAATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTGTATTCTG
GTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTCCTTATTG
AAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACAggcaaaa
aataaacaaagggAAGCATTATTCAGCACAGTTAAgtttataattttaaa
tcacCACGCCATTCCAAAAAtgctcattta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006972XLOC_006972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012415-exon-sc0000144-1491911889:295681..295829TCONS_00012415-exon-sc0000144-1491911889:295681..295829Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:295681..295829TCONS_00012415-exon-sc0000144-1510915933:295681..295829Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:295681..295829TCONS_00012415-exon-sc0000144-1575043694:295681..295829Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:296006..296119TCONS_00012415-exon-sc0000144-1491911889:296006..296119Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:296006..296119TCONS_00012415-exon-sc0000144-1510915933:296006..296119Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:296006..296119TCONS_00012415-exon-sc0000144-1575043694:296006..296119Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:296309..296403TCONS_00012415-exon-sc0000144-1491911889:296309..296403Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:296309..296403TCONS_00012415-exon-sc0000144-1510915933:296309..296403Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:296309..296403TCONS_00012415-exon-sc0000144-1575043694:296309..296403Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:298061..298162TCONS_00012415-exon-sc0000144-1491911889:298061..298162Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:298061..298162TCONS_00012415-exon-sc0000144-1510915933:298061..298162Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:298061..298162TCONS_00012415-exon-sc0000144-1575043694:298061..298162Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:298750..298841TCONS_00012415-exon-sc0000144-1491911889:298750..298841Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:298750..298841TCONS_00012415-exon-sc0000144-1510915933:298750..298841Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:298750..298841TCONS_00012415-exon-sc0000144-1575043694:298750..298841Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:299187..299310TCONS_00012415-exon-sc0000144-1491911889:299187..299310Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:299187..299310TCONS_00012415-exon-sc0000144-1510915933:299187..299310Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:299187..299310TCONS_00012415-exon-sc0000144-1575043694:299187..299310Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:299589..299683TCONS_00012415-exon-sc0000144-1491911889:299589..299683Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:299589..299683TCONS_00012415-exon-sc0000144-1510915933:299589..299683Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:299589..299683TCONS_00012415-exon-sc0000144-1575043694:299589..299683Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:300027..300120TCONS_00012415-exon-sc0000144-1491911889:300027..300120Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:300027..300120TCONS_00012415-exon-sc0000144-1510915933:300027..300120Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:300027..300120TCONS_00012415-exon-sc0000144-1575043694:300027..300120Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:300287..300352TCONS_00012415-exon-sc0000144-1491911889:300287..300352Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:300287..300352TCONS_00012415-exon-sc0000144-1510915933:300287..300352Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:300287..300352TCONS_00012415-exon-sc0000144-1575043694:300287..300352Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:301420..301447TCONS_00012415-exon-sc0000144-1491911889:301420..301447Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:301420..301447TCONS_00012415-exon-sc0000144-1510915933:301420..301447Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:301420..301447TCONS_00012415-exon-sc0000144-1575043694:301420..301447Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:301906..302006TCONS_00012415-exon-sc0000144-1491911889:301906..302006Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:301906..302006TCONS_00012415-exon-sc0000144-1510915933:301906..302006Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:301906..302006TCONS_00012415-exon-sc0000144-1575043694:301906..302006Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:302322..302414TCONS_00012415-exon-sc0000144-1491911889:302322..302414Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:302322..302414TCONS_00012415-exon-sc0000144-1510915933:302322..302414Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:302322..302414TCONS_00012415-exon-sc0000144-1575043694:302322..302414Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:302642..302714TCONS_00012415-exon-sc0000144-1491911889:302642..302714Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:302642..302714TCONS_00012415-exon-sc0000144-1510915933:302642..302714Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:302642..302714TCONS_00012415-exon-sc0000144-1575043694:302642..302714Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:302952..303100TCONS_00012415-exon-sc0000144-1491911889:302952..303100Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:302952..303100TCONS_00012415-exon-sc0000144-1510915933:302952..303100Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:302952..303100TCONS_00012415-exon-sc0000144-1575043694:302952..303100Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:303488..303640TCONS_00012415-exon-sc0000144-1491911889:303488..303640Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:303488..303640TCONS_00012415-exon-sc0000144-1510915933:303488..303640Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:303488..303640TCONS_00012415-exon-sc0000144-1575043694:303488..303640Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:303858..303953TCONS_00012415-exon-sc0000144-1491911889:303858..303953Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:303858..303953TCONS_00012415-exon-sc0000144-1510915933:303858..303953Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:303858..303953TCONS_00012415-exon-sc0000144-1575043694:303858..303953Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1491911889:304398..304760TCONS_00012415-exon-sc0000144-1491911889:304398..304760Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1510915933:304398..304760TCONS_00012415-exon-sc0000144-1510915933:304398..304760Clytia hemisphaericaexon
TCONS_00012415-exon-sc0000144-1575043694:304398..304760TCONS_00012415-exon-sc0000144-1575043694:304398..304760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:295681..304760 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.448288	0.52331	0.734285	0.692212	142.207	119.693	166.995	147.073	130.332	141.046	128.404	120.083	247.997	227.525	139.061	190.522	140.134	113.509	121.76	136.975	112.627	122.975	52.8494	55.0894	50.41	32.1856	22.3339	22.6043	138.536	121.272
Blast
[Close]
BLAST of TCONS_00012415 vs. Swiss-Prot (Human)
Match: AGT2 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 8.193e-170
Identity = 237/467 (50.75%), Postives = 305/467 (65.31%), Query Frame = 2 
Query:  323 MPSTDFQPAEFKGMPYDEARAAHAKNLFPHVSERMLLYKRPVYLTQGHMQWLWDSEGKRYLDLFAGIATCGVGHCHPKITESIQDQASKLVHCSNLYINAKQAEYAEKLLTKLPEKYNRVYFVNSGSEANDFAMTMMRVYTGSWDIIGLRNAYHGASPTTLGITNMGQYKFPTPQNFGCHTIPNPDVYKGIWGGKNCRDSPVQADRDCDCAEGVCEATDLYLGQLEDVLTNVTPPKVAGFFGEPIQGVGGSVQYPRDFLQKTYEKIHARGGLCVADEVQTGFGRTGSHYWGFQGSGLNPDIIVCAKTIANGLPMACVITTKEIADSMNVALP-FNTYSSNPVSCAAAITALDVIDEEGLQENCQRVGTYCLEELSKIRDDYEIVGDVRGKGLMIGIEMVADKKTRAPLQPERVGDIIERTKDYGVLFGKGGRFGQVLRIKPPMNVTKEDIDFGLAVLRQSIEEHLAQ 1720
            MP  DF P  ++ + Y+     H ++L P V+     +++P+ L QGHM+WL+D+EG RYLD F+GI T  VGHCHPK+    Q Q  +L H S ++ +    EYAEKL   LPE    ++ VNSGSEAN+ AM M R ++ + DII  R AYHG SP TLG+TN+G YK   P   GC     PDV++G WGG +CRDSPVQ  R C CA   C+A D Y+ Q +D L+      +AGFF EPIQGV G VQYP+ FL++ +E + ARGG+C+ADEVQTGFGR GSH+WGFQ   + PDI+  AK I NG PMA VITT EIA S+   L  FNT+  NP++CA     L+VI EE LQEN Q VGTY L + +K+RD++EIVGDVRGKGLMIGIEMV DK +  PL  E V  I E  K  G+L G+G  F Q  RI P M +TK ++DF + V R ++ +H+ +
Sbjct:   48 MPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTA---YFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQHMER 511
The following BLAST results are available for this feature:
BLAST of TCONS_00012415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGT28.193e-17050.75Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
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