TCONS_00012413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012413
Unique NameTCONS_00012413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012413 ID=TCONS_00012413|Name=TCONS_00012413|organism=Clytia hemisphaerica|type=transcript|length=498bp
aaaagataacatagcCCCCGTTTCAattaaaaatttggagatttgatgTT
CAGTCAATTTTGTGCATCTTCTATCATTTAATTAATATCTTTCAGACATG
TTTTGAAGATGCTGCCAGTATCCTTGGTGAATATGACAGTCTGTTAGCAG
GACGAATCACCTTTAAAGATGTCTATCTAAACATACCACGAATGAATGAG
GAAAGGTTTTTTGAACTGATGGAAAATTTCACTTCGAATGGGACTTCTTA
CACCACCAGGGGGACAAGTGATTGGCTATCGGAGATTTTCCAAGGTCTTG
GCAACCAATATGAAGAATTGATGCAATTAAAGAAAAAGTTGAGCGCAGGC
TATACCGCAATATCCAACTCCAAGGATGACTTCgttcaatattttgacaa
atatgaAAGTGATGACAATAGTTATTTTTTCAAGATGAGAATTGAAGGCG
CTTTCCCTCGACAATGGATCATTGAGAAATTATCATATCGAAGAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00012413-protein

>TCONS_00012413-protein ID=TCONS_00012413-protein|Name=TCONS_00012413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MNEERFFELMENFTSNGTSYTTRGTSDWLSEIFQGLGNQYEELMQLKKKL
SAGYTAISNSKDDFVQYFDKYESDDNSYFFKMRIEGAFPRQWIIEKLSYR
RG
Run BLAST on NCBI

transcript from alignment at sc0000144:283679..284841+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012413 ID=TCONS_00012413|Name=TCONS_00012413|organism=Clytia hemisphaerica|type=transcript|length=1163bp|location=Sequence derived from alignment at sc0000144:283679..284841+ (Clytia hemisphaerica)
aaaagataacatagcCCCCGTTTCAattaaaaatttggagatttgatgTT
CAGTCAATTTTGTGCATCTTCTATCATTTAATTAATATCTTTCAGACATG
TTTTGAAGATGCTGCCAGTATCCTTGGTGAATATGACAGTCTGTTAGCAG
GACGAATCACCTTTAAAGATGTCTATCTAAACATACCACGAATGAATGAG
GAAAGGTTTTTTGAACTGATGGAAAATTTCACTTCGAATGGGACTTCTTA
CACCACCAGGGGGACAAGGTATGCTTCAGAGGATAATTCTGTTCTTTGAA
ATGAACGGATGTTCTGTAATAATTGATGGTTTTTGTGAGAGGAAAATTAA
GGAGAAGTCTGGTTAAtcaattttggtattttgggaAGAAAAACGTTCCT
GGAAATTCATGTATCTAAATTTTTGTCATTGCTTTAAACAAAAAAGTCTT
TGATATCTTCATGTCAGTCTACCATTCTATTCTAGCCAACCAGCACAATC
TAAAGGTTTCAGACCTGAATAGTCAGGTGTTTAAAGGCTGAAAAGGTAGT
CACTTGGACTTGTAACTTTTGAATACTATGTTCCTTTGCAGTGATTGGCT
ATCGGAGATTTTCCAAGGTCTTGGCAACCAATATGAAGAATTGATGCAAT
TAAAGAAAAAGTTGAGCGCAGGCTATACCGCAATATCCAACTCCAAGGAT
GACTTCgttcaatattttgacaaatatgaAAGTAAGAATGTTTTGTTATT
GGTTGATTAACCTTTTCCTTGGGGGTTTGCTTGGAATGGAAGCCACTTTG
GATGAGGATGAACTCTCATTGTGAAGCGCTAACATCACAACAAAGAACTT
CTAAATAAAACTATtgccaaaaattttattattcagATAAAATGGAGTTT
CTtacagggtcgacttttggttatttttgacaattttcggGGTAGAAATT
GGTctatttttcaaactccaggcACATCCctgtcggccgtcaaggtcctC
CCCCCCcggaaaatattcttataaggTGTATGATTAATCGAAATGATGGA
TTtgaattctctcttttcttCAGGTGATGACAATAGTTATTTTTTCAAGA
TGAGAATTGAAGGCGCTTTCCCTCGACAATGGATCATTGAGAAATTATCA
TATCGAAGAGGTA

Coding sequence (CDS) from alignment at sc0000144:283679..284841+

>TCONS_00012413 ID=TCONS_00012413|Name=TCONS_00012413|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000144:283679..284841+ (Clytia hemisphaerica)
ATGAATGAGGAAAGGTTTTTTGAACTGATGGAAAATTTCACTTCGAATGG
GACTTCTTACACCACCAGGGGGACAAGTGATTGGCTATCGGAGATTTTCC
AAGGTCTTGGCAACCAATATGAAGAATTGATGCAATTAAAGAAAAAGTTG
AGCGCAGGCTATACCGCAATATCCAACTCCAAGGATGACTTCgttcaata
ttttgacaaatatgaAAGTGATGACAATAGTTATTTTTTCAAGATGAGAA
TTGAAGGCGCTTTCCCTCGACAATGGATCATTGAGAAATTATCATATCGA
AGAGGTATGAATGAGGAAAGGTTTTTTGAACTGATGGAAAATTTCACTTC
GAATGGGACTTCTTACACCACCAGGGGGACAAGTGATTGGCTATCGGAGA
TTTTCCAAGGTCTTGGCAACCAATATGAAGAATTGATGCAATTAAAGAAA
AAGTTGAGCGCAGGCTATACCGCAATATCCAACTCCAAGGATGACTTCgt
tcaatattttgacaaatatgaAAGTGATGACAATAGTTATTTTTTCAAGA
TGAGAATTGAAGGCGCTTTCCCTCGACAATGGATCATTGAGAAATTATCA
TATCGAAGAGGTATGAATGAGGAAAGGTTTTTTGAACTGATGGAAAATTT
CACTTCGAATGGGACTTCTTACACCACCAGGGGGACAAGTGATTGGCTAT
CGGAGATTTTCCAAGGTCTTGGCAACCAATATGAAGAATTGATGCAATTA
AAGAAAAAGTTGAGCGCAGGCTATACCGCAATATCCAACTCCAAGGATGA
CTTCgttcaatattttgacaaatatgaAAGTGATGACAATAGTTATTTTT
TCAAGATGAGAATTGAAGGCGCTTTCCCTCGACAATGGATCATTGAGAAA
TTATCATATCGAAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006971XLOC_006971Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012413-proteinTCONS_00012413-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012413-exon-sc0000144-1491911889:283679..283946TCONS_00012413-exon-sc0000144-1491911889:283679..283946Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1510915933:283679..283946TCONS_00012413-exon-sc0000144-1510915933:283679..283946Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1575043694:283679..283946TCONS_00012413-exon-sc0000144-1575043694:283679..283946Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1491911889:284270..284409TCONS_00012413-exon-sc0000144-1491911889:284270..284409Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1510915933:284270..284409TCONS_00012413-exon-sc0000144-1510915933:284270..284409Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1575043694:284270..284409TCONS_00012413-exon-sc0000144-1575043694:284270..284409Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1491911889:284752..284841TCONS_00012413-exon-sc0000144-1491911889:284752..284841Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1510915933:284752..284841TCONS_00012413-exon-sc0000144-1510915933:284752..284841Clytia hemisphaericaexon
TCONS_00012413-exon-sc0000144-1575043694:284752..284841TCONS_00012413-exon-sc0000144-1575043694:284752..284841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:283679..284841 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.490891	0.625926	0.235482	0	0.930446	0.392458	5.23112	3.54616	4.49266	4.18037	8.28559	3.41243	16.6516	23.1112	11.2702	10.1638	12.3186	11.433	8.40847	10.0421	4.89506	6.41921	3.4836	2.92702	12.1953	13.6451	0.423886	0.667551	7.29858	5.14547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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