TCONS_00012411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012411
Unique NameTCONS_00012411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012411 ID=TCONS_00012411|Name=TCONS_00012411|organism=Clytia hemisphaerica|type=transcript|length=3324bp
TCTTCATCCCAAGATATTTCTGTCTTTTACCTTCTGGATCTAGCGGGCTT
GAGACATCGGTCAAGGCACTTCACAATTTGACTATAATTCACTACTTATT
GAATTATTCCAACCAGCTTTTCCGTGACTTCGATCAAACTTCGATCAATA
ATAAAAAACAGTAGAACGAAAACAATTCAACATGGCGGAAGTTGAGCAAC
TCAATTTATCAAACAGTAAGAATGCAAACAAGAAGAGCCCacgaaacaac
aacaacaacaacagtgaGAAGAAACCAAAAACTCAACGATCAACCTCAAA
ATCAGCCTCCACTACACCACGAACCACTCCTCGTGGTGACGATTTACCCC
AAGTGACATGCGCAAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgac
gtcatcaaaggtGATATCCATTCTTACAGGACTATCAAAGTTCTCCGAGA
AGATCGCAAAGACTTGTTGAAAAAGCTTGCAGCATTGGACGAACGCGTTG
AATCTATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTATGGCAATG
CAGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGT
TCCTTATGTCAACAATGTCAAAcatctggtcagtaaaatgcaCGAGGAGT
TTAACACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaagaacaacAG
GTTCCCTTCTTGGATGACTTACTTGgacaatttgaaaatttccagaAACT
TTGTGAAAGCATCATTGTGACTCACATTCATTATCACGTgacctttttgg
aagatttccATTTAGTTGCTGGAAAGATTAGAGGCATGATGAAGACCATT
ATCACACTTATGTATGACGACGAAAGTACATCTAAAGACGATGATGATAA
TATCATTAAAGATCAAGATATCCAAGAAGCTGCCATCAATGATGAGGACG
CAAACGAGGAAGAAACCAAAGAAGAGTCTAACAACAACAAATCCAACAAC
AATGAATTGGTCTCTGGTAATAACAAGAACACCTTGGTCATCTCCAATGG
TCAACATTTACCATCTGTCACCAACACTGATGAACAAGAAGAAAAACCAC
CACAAGATCCATCCTCAACACCTCAAGAACTTCACCAGCTCCGTAAAGTC
TTCAGTAATATCAACGACCTTTTAAGTCGCATCCAGCGTCTATCTCTCGG
CAACCCAAGAATCCAATCCATGAAAGACGCTTCCTTATCCATTGCAGAGG
TTTTGATTGATGCTGGGCCATTGGTTAAGCACTGGCAAACACAAAACATT
CCCTGTATCGACTCTATTGAGAATTTCATTACCAAGATGCTGAAAGTGGC
CACTATCCGTCGACCTTCCGAAAAACATATCGAACAAATGAAGATGTTAT
TAGGAGTCTGGGACGGGCGTGTCTTAATTGTAGCCAAATACATGGCCATC
CAGAATTAACTTTAAACTATACATGCGTTGATAATTGAAACAAGCATGAT
GCTCAAATTAAAACTGAAAACATTTTCACTTGAatcttgaatttattttt
taaattttaaccgAATAGAGCATAGAACTTTCTGGTAAATCACAGACGAT
TCTAATCCTAAATtgtttggattcatgaaagcgGTAAATTAACTTCAATA
TTGAATATTCAGTagtttaacattttttttacttgtgcATGTAATTATTT
TAATTGGTTCTTTTTTGAACAGGGAAAACTCGAATTTTTCAGAACTTCAA
TAATATAGCACTCAACCCTTATCctcaaaaatacatttaaacTTTTAGAA
ATGCTTCAAATATAAAACTGCCGTTCGCCAGATGGAGATAATGTGCGTCC
ACTTGCTAAGCGAACCGCAtagttatctggcacccagatgcagaCATTTA
TATTTGACACACTGAAGGTCGTgaacattttcaacatttggaAGTTTCAA
ATTACGGGGTTTCGCCACACCgccgtcaaggattttgcagtggGGACCCT
CGTAAGCCCAACCTAAATATTTATAGGCTTACGCGTaagggtagttgaac
ccgactggggatgcggTCCGATAGAAAATTGGCCctgctccctttagagc
ttatTTAGCGAGGGGGGCCgcccgccaatccgccatcggaatatgaGATA
ACTTGATAACTAGTGAACTCTATAGTGCAACATTGGGAATCGAACAAGGG
GCTCTGCAAAGAAGGCCATCCATTACCTTGCTTGAAAGCGAGATAATTTg
atcaagctgaaaaatcaacTAATATAGGTTAAATTTCTTTCTTGAAAGCT
ACTATAACTTCACATAGAAGAAGATTATTACGATATTATTAAAGCACAAT
TTATATTATATATGCAAACCCAGAAAAAGTAATATAAAATCACATAACAT
CAAACTGAAATTAGTTTTTATAAATGGAACCTTTAAATTTTTCAGGTATT
GAGATGAAGATCGCAAAGAGGTTGAAAACCGTCCataactgaaaattatt
tttgattttgacttttatcaaatcaaagTATATGCCGTAAACTCAGAAAG
TTTGTCGCCCATgacctttttcattttcaatgaaccGTCATGTTCCAGCC
AAGGCCAGATCAGTGCCGGGCCGTGAAAGTCAGGTATTACTTGAATTCTC
GTCACAAAATGTAATGAATAATTATctaaattagaaaaataatcATAATA
AATTTACTTTCTATTTAAATTAAAAgtcactttaaaattttgggcAACCT
TTTTCTTCTCTCAGTAAAGTAATTTCATACAACATATATTGGTTTTCTGC
TTGTATCTTTTCGATAAGCATGCGTAGTTGCAagttttctttctcataat
gcGCTTGCTTGTTCAGTGTCTCTAATTCCTTACGTCGTCGGTCTTCACGT
GACTTGCGTGCGGCCACGTTGTTCTTAATTCGTTTCTGCCAATAATCTTC
CGTCTTATTATCTTCATCAACGAATTTACGCGAGTTTTTCTTTCCCAACG
GTTTCGGGTTGTATTTATAATGTCGATTATTGTGTGATTTTCGATCTCGC
ATCATTAATTTGAAATCGTAACTGCTGTTTACGTCGTAATTTTGTCCATC
GTAAGGTTCAGTTTTCGTAACTACGTTGCCGGCGCTGCAAATGTCTTTTT
CGTTTCTTTGCTCGCTactcatttttagtttttggaATTCTTATATTTTC
TGATGATCTTCCGTTATCAGTTCCAGCCAAGTTTACTTGCTTCAACTTTA
CTCAATTTTCAACATCTCAAAGCAtcctaaaactcaaaaacaacgttgca
tccaattttttttgcgCTGGCCAA
Run BLAST on NCBI

transcript from alignment at sc0000144:269535..275478+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012411 ID=TCONS_00012411|Name=TCONS_00012411|organism=Clytia hemisphaerica|type=transcript|length=5944bp|location=Sequence derived from alignment at sc0000144:269535..275478+ (Clytia hemisphaerica)
TCTTCATCCCAAGATATTTCTGTCTTTTACCTTCTGGATCTAGCGGGCTT
GAGACATCGGTCAAGGCACTTCACAATTTGACTATAATTCACTACTTATT
GAATTATTCCAACCAGCTTTTCCGTGACTTCGATCAAACTTCGATCAATA
ATAAAAAACAGTAGAACGAAAACAATTCAACATGGCGGAAGTTGAGCAAC
TCAATTTATCAAACAGTAAGAATGCAAACAAGAAGAGCCCacgaaacaac
aacaacaacaacagtgaGAAGAAACCAAAAACTCAACGATCAACCTCAAA
ATCAGGTATACTTATTATTATCACTTTTAAGTACAGAGCGTTTTTAAACG
TTTCCACGTGTCAGCAAATAACGACAATGGTTTTGAAGCAATTTTAACTT
TTCACGGATAAGATTTGAAGTATCAgccaaaaactttaattttcattcgA
AGATTGTAGAATagtgatttttcagtttcataatttttatttcaaacatt
taattagaaaattttgaaaaaagttgtgatttttggGTCAAGACTCATGT
CGGAAAATGTCGACATCGACACGGAAAGGGTTGTAGTCAAATTCATCGTT
TAGATCTAACCTTTGTTCTTGTATTCAACTCTTCTTTCCGTTCGCCCGTT
CTTACTTTTGCAGctttttctcgggatcggctctttagtgagtttatgta
ttcgagataaatcgagggggacggtataaagcaaagttgacatgtttCCA
AAATCACAGTCCACTTTGCTTGACGACagtaaaaaaacaccaaaataccg
tcgtctgttaaGGTgggcaaaggcgatatagagctgtacatcaactatcg
actttgttttgtgtCATTTCTCTTACCGTCGCCGTCGGGTATTAGCTTAT
TCTAAGACGGAAAATGGTCATGCCTTAAATGTGACGGAGGCCGGTTTTCT
ATTCTTCTACCCTACTGTTTAATTAAATTTGTCCATTGGTttagaaaaat
tactttcattaTAGCCTCCACTACACCACGAACCACTCCTCGTGGTGACG
ATTTACCCCAAGTGACATGCGCAAGAACGCTGGTCCCTCTCAAAGTAGAa
ggcgatgacgtcatcaaaggtGATATCCATTCTTACAGGACTATCAAAGT
TCTCCGAGAAGATCGCAAAGACTTGTTGAAAAAGCTTGCAGCATTGGACG
AACGCGTTGAATCTATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGT
ATGGCAATGCAGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAA
CCAAGGTGTTCCTTATGTCAACAATGTCAAAcatctggtcagtaaaatgc
aCGAGGAGTTTAACACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaa
gaacaacAGGTTCCCTTCTTGGATGACTTACTTGgacaatttgaaaattt
ccagaAACTTTGTGAAAGCATCATTGTGACTCACATTCATTATCACGTga
cctttttggaagatttccATTTAGTTGCTGGAAAGATTAGAGGTAGAACG
CCATTTTTATTAGAGGGGATTTCGAGGGAATCGAACTTTTATTCATTCCA
CTAATGTCtcaaactttgaagaaaatgtaaaaaaactgTTTTCGTCTCTC
GTCGGAGAAACTGATATTTTAACTACTTTAACCTATATATTTTTTTNAAC
GATCAACCTCAAAATCAGGTATACTTATAATTATCACTTTTAAGTACAGA
GCGTTTTTAAACGTTTCCACGTGTCAGCAAATAACGACAATGGTTTTGAA
GCAATTTTAACTTTTCACGGATAAGATTTGAAGTATCAgccaaaaacttt
aattttcattcgAAGATTGTAGAATTGTGATTATTATCGACATAGGCACG
AAAAGGGTTGTGGTCAAATTCATCGTTTAGATCTAACCTTTGTTCTTGTA
TTCAACTCTCCGTTTGTTCGCCCGTTCTTACGTTTCCAGctttttctcgg
gatcggctcattagcgagtttatgtatttgagataaatcgagggggacgg
tataaaggaaagttgacatgtctccgaaatcaccgtccactttgctcgac
gacggtaaaaacaccaaaataccgtcgtctgtttaggttagcaaaggcga
tatagagccgtacattaactatcgactttgttttgtgtCATTTTTCTTAC
CGTCGTCTTCGATATCATTCGATACATAAACCGTCGGGTATTAGCTTATC
CTAAGACGGAAAATGGTCATGCcttaaatgtgacggagcctggtTTTCTA
TTCTTCTACCCTACTGTTTAATTAAATTTGTCCATTGGTttagaaaaatt
actttcattaTAGCCTCCACTACACCACGAACCACTCCTCGGGGTGACGA
TGTACCCCAAATGACATGCGCCAGAACGCTGGTCCCTCTCAAAGTAGAag
gcgatgacgtcatcaaaggtGATATCCATTCTTACAGAACTATCAAAGTT
CTCCGAGAAGATCGCAAAGACTTGCTGAAAAAGCTTGCAGCATTGGACGA
ACGCGTTGAATCTATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTA
TGGCAATGCAGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAAC
CAAGGTGTTCCTTATGTCAACAATGTCAAAcatctggtcagtaaaatgca
CGAGGAGTTTAACACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaag
aacaacAGGTTCCCTTCTTGGATGACTTACTTGGACAATTTGGAAATTTC
CAGAAACTTTGTGAAAGCATCATTGTGACTCACATTCATTATCACGTgac
ctttttggaagatttccATTTAGTTGCTGGAAAGATTAGAGGTAGAACGC
CATTTTTATTAGAGGGGATTTCGAGGGAATCGAACTTTTATTCATTCCAC
TAATGTCtcaaactttgaagaaaatgtaaaaaaactgTTATCGTCTCTCG
TCGGAGAAACTGATATTTTAACTACTTTAacctatatatttttttatttg
cgAATGTATATTCATTGTTTGGTTTTTCCCCCAGGATAAAGTAGTAAAAT
CTTGCAAAATGAGATAAATAGCCTAGCTATTAAGCTACGGTCATCAGAGG
CCTGTTACCACTTCTTGTAGTAATTATGTAAACAATCTTTTTGACAGGCA
TGATGAAGACCATTATCACACTTATGTATGACGACGAAAGTACATCTAAA
GACGATGATGATAATATCATTAAAGATCAAGATATCCAAGAAGCTGCCAT
CAATGTGAgcattttttctgattcttatTTTTGGTCATTGTCTGTGTTCA
AACATATATGCTGGATAAGAGGGCAACTGTCTTCATTTAGGCATATATTA
ATGTGTCTAGTTTAGTAGTGGAGCACGtgaaagaaaattcaaacttGAGG
AGACCAGAGTCAAAATAGTTTTCTTTCTACAACAAAATCAAGGGATCTGA
CCCGGTCTTCCCGCGCTTCAAGGGTCGAAAGGTTGATTTGTTTCTCCTTG
TATTCTCTAGGATGAGGACGCAAACGAGGAAGAAACCAAAGAAGAGTCTA
ACAACAACAAATCCAACAACAATGAATTGGTCTCTGGTAATAACAAGAAC
ACCTTGGTCATCTCCAATGGTCAACATTTACCATCTGTCACCAACACTGA
TGAACAAGAAGAAAAACCACCACAAGATCCATCCTCAACACCTCAAGAAC
TTCACCAGCTCCGTAAAGTCTTCAGTAATATCAACGACCTTTTAAGTCGC
ATCCAGCGTCTATCTCTCGGCAACCCAAGAATCCAATCCATGAAAGACGC
TTCCTTATCCATTGCAGAGGTTTTGATTGATGCTGGGCCATTGGTTAAGC
ACTGGCAAACACAAAACATTCCCTGTATCGACTCTATTGAGAATTTCATT
ACCAAGATGCTGAAAGTGGCCACTATCCGTCGACCTTCCGAAAAACATAT
CGAACAAATGAAGATGTTATTAGGAGTCTGGGACGGGCGTGTCTTAATTG
TAGCCAAATACATGGCCATCCAGAATTAACTTTAAACTATACATGCGTTG
ATAATTGAAACAAGCATGATGCTCAAATTAAAACTGAAAACATTTTCACT
TGAatcttgaatttattttttaaattttaaccgAATAGAGCATAGAACTT
TCTGGTAAATCACAGACGATTCTAATCCTAAATtgtttggattcatgaaa
gcgGTAAATTAACTTCAATATTGAATATTCAGTagtttaacatttttttt
acttgtgcATGTAATTATTTTAATTGGTTCTTTTTTGAACAGGGAAAACT
CGAATTTTTCAGAACTTCAATAATATAGCACTCAACCCTTATCctcaaaa
atacatttaaacTTTTAGAAATGCTTCAAATATAAAACTGCCGTTCGCCA
GATGGAGATAATGTGCGTCCACTTGCTAAGCGAACCGCAtagttatctgg
cacccagatgcagaCATTTATATTTGACACACTGAAGGTCGTgaacattt
tcaacatttggaAGTTTCAAATTACGGGGTTTCGCCACACCgccgtcaag
gattttgcagtggGGACCCTCGTAAGCCCAACCTAAATATTTATAGGCTT
ACGCGTaagggtagttgaacccgactggggatgcggTCCGATAGAAAATT
GGCCctgctccctttagagcttatTTAGCGAGGGGGGCCgcccgccaatc
cgccatcggaatatgaGATAACTTGATAACTAGTGAACTCTATAGTGCAA
CATTGGGAATCGAACAAGGGGCTCTGCAAAGAAGGCCATCCATTACCTTG
CTTGAAAGCGAGATAATTTgatcaagctgaaaaatcaacTAATATAGGTT
AAATTTCTTTCTTGAAAGCTACTATAACTTCACATAGAAGAAGATTATTA
CGATATTATTAAAGCACAATTTATATTATATATGCAAACCCAGAAAAAGT
AATATAAAATCACATAACATCAAACTGAAATTAGTTTTTATAAATGGAAC
CTTTAAATTTTTCAGGTATTGAGATGAAGATCGCAAAGAGGTTGAAAACC
GTCCataactgaaaattatttttgattttgacttttatcaaatcaaagTA
TATGCCGTAAACTCAGAAAGTTTGTCGCCCATgacctttttcattttcaa
tgaaccGTCATGTTCCAGCCAAGGCCAGATCAGTGCCGGGCCGTGAAAGT
CAGGTATTACTTGAATTCTCGTCACAAAATGTAATGAATAATTATctaaa
ttagaaaaataatcATAATAAATTTACTTTCTATTTAAATTAAAAgtcac
tttaaaattttgggcAACCTTTTTCTTCTCTCAGTAAAGTAATTTCATAC
AACATATATTGGTTTTCTGCTTGTATCTTTTCGATAAGCATGCGTAGTTG
CAagttttctttctcataatgcGCTTGCTTGTTCAGTGTCTCTAATTCCT
TACGTCGTCGGTCTTCACGTGACTTGCGTGCGGCCACGTTGTTCTTAATT
CGTTTCTGCCAATAATCTTCCGTCTTATTATCTTCATCAACGAATTTACG
CGAGTTTTTCTTTCCCAACGGTTTCGGGTTGTATTTATAATGTCGATTAT
TGTGTGATTTTCGATCTCGCATCATTAATTTGAAATCGTAACTGCTGTTT
ACGTCGTAATTTTGTCCATCGTAAGGTTCAGTTTTCGTAACTACGTTGCC
GGCGCTGCAAATGTCTTTTTCGTTTCTTTGCTCGCTactcatttttagtt
tttggaATTCTTATATTTTCTGATGATCTTCCGTTATCAGTTCCAGCCAA
GTTTACTTGCTTCAACTTTACTCAATTTTCAACATCTCAAAGCAtcctaa
aactcaaaaacaacgttgcatccaattttttttgcgCTGGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006969XLOC_006969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012411-exon-sc0000144-1491911889:269535..269839TCONS_00012411-exon-sc0000144-1491911889:269535..269839Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1510915933:269535..269839TCONS_00012411-exon-sc0000144-1510915933:269535..269839Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1575043694:269535..269839TCONS_00012411-exon-sc0000144-1575043694:269535..269839Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1491911889:270549..271018TCONS_00012411-exon-sc0000144-1491911889:270549..271018Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1510915933:270549..271018TCONS_00012411-exon-sc0000144-1510915933:270549..271018Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1575043694:270549..271018TCONS_00012411-exon-sc0000144-1575043694:270549..271018Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1491911889:272368..272425TCONS_00012411-exon-sc0000144-1491911889:272368..272425Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1510915933:272368..272425TCONS_00012411-exon-sc0000144-1510915933:272368..272425Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1575043694:272368..272425TCONS_00012411-exon-sc0000144-1575043694:272368..272425Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1491911889:272732..272838TCONS_00012411-exon-sc0000144-1491911889:272732..272838Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1510915933:272732..272838TCONS_00012411-exon-sc0000144-1510915933:272732..272838Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1575043694:272732..272838TCONS_00012411-exon-sc0000144-1575043694:272732..272838Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1491911889:273095..275478TCONS_00012411-exon-sc0000144-1491911889:273095..275478Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1510915933:273095..275478TCONS_00012411-exon-sc0000144-1510915933:273095..275478Clytia hemisphaericaexon
TCONS_00012411-exon-sc0000144-1575043694:273095..275478TCONS_00012411-exon-sc0000144-1575043694:273095..275478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:269535..275478 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.649191	0.610851	0.0994317	0.241285	0.491492	0.291939	0.26357	0.562044	0.300046	0.368532	0.217049	0.325445	15.597	19.2145	0.0729747	0.329258	43.6405	71.791	20.6902	25.8754	3.84107	3.81344	1.17111	1.62869	1.14106	1.67835	1.81568	0.266671	0	0.322359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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