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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012410 ID=TCONS_00012410|Name=TCONS_00012410|organism=Clytia hemisphaerica|type=transcript|length=3328bp
ATTTTCTTCATCCCAAGATATTTCTGTCTTTTACCTTCTGGATCTAGCGG
GCTTGAGACATCGGTCAAGGCACTTCACAATTTGACTATAATTCACTACT
TATTGAATTATTCCAACCAGCTTTTCCGTGACTTCGATCAAACTTCGATC
AATAATAAAAAACAGTAGAACGAAAACAATTCAACATGGCGGAAGTTGAG
CAACTCAATTTATCAAACAGTAAGAATGCAAACAAGAAGAGCCCacgaaa
caacaacaacaacaacagtgaGAAGAAACCAAAAACTCAACGATCAACCT
CAAAATCAGCCTCCACTACACCACGAACCACTCCTCGGGGTGACGATGTA
CCCCAAATGACATGCGCCAGAACGCTGGTCCCTCTCAAAGTAGAaggcga
tgacgtcatcaaaggtGATATCCATTCTTACAGAACTATCAAAGTTCTCC
GAGAAGATCGCAAAGACTTGCTGAAAAAGCTTGCAGCATTGGACGAACGC
GTTGAATCTATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTATGGC
AATGCAGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAACCAAG
GTGTTCCTTATGTCAACAATGTCAAAcatctggtcagtaaaatgcaCGAG
GAGTTTAACACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaagaaca
acAGGTTCCCTTCTTGGATGACTTACTTGGACAATTTGGAAATTTCCAGA
AACTTTGTGAAAGCATCATTGTGACTCACATTCATTATCACGTgaccttt
ttggaagatttccATTTAGTTGCTGGAAAGATTAGAGGCATGATGAAGAC
CATTATCACACTTATGTATGACGACGAAAGTACATCTAAAGACGATGATG
ATAATATCATTAAAGATCAAGATATCCAAGAAGCTGCCATCAATGATGAG
GACGCAAACGAGGAAGAAACCAAAGAAGAGTCTAACAACAACAAATCCAA
CAACAATGAATTGGTCTCTGGTAATAACAAGAACACCTTGGTCATCTCCA
ATGGTCAACATTTACCATCTGTCACCAACACTGATGAACAAGAAGAAAAA
CCACCACAAGATCCATCCTCAACACCTCAAGAACTTCACCAGCTCCGTAA
AGTCTTCAGTAATATCAACGACCTTTTAAGTCGCATCCAGCGTCTATCTC
TCGGCAACCCAAGAATCCAATCCATGAAAGACGCTTCCTTATCCATTGCA
GAGGTTTTGATTGATGCTGGGCCATTGGTTAAGCACTGGCAAACACAAAA
CATTCCCTGTATCGACTCTATTGAGAATTTCATTACCAAGATGCTGAAAG
TGGCCACTATCCGTCGACCTTCCGAAAAACATATCGAACAAATGAAGATG
TTATTAGGAGTCTGGGACGGGCGTGTCTTAATTGTAGCCAAATACATGGC
CATCCAGAATTAACTTTAAACTATACATGCGTTGATAATTGAAACAAGCA
TGATGCTCAAATTAAAACTGAAAACATTTTCACTTGAatcttgaatttat
tttttaaattttaaccgAATAGAGCATAGAACTTTCTGGTAAATCACAGA
CGATTCTAATCCTAAATtgtttggattcatgaaagcgGTAAATTAACTTC
AATATTGAATATTCAGTagtttaacattttttttacttgtgcATGTAATT
ATTTTAATTGGTTCTTTTTTGAACAGGGAAAACTCGAATTTTTCAGAACT
TCAATAATATAGCACTCAACCCTTATCctcaaaaatacatttaaacTTTT
AGAAATGCTTCAAATATAAAACTGCCGTTCGCCAGATGGAGATAATGTGC
GTCCACTTGCTAAGCGAACCGCAtagttatctggcacccagatgcagaCA
TTTATATTTGACACACTGAAGGTCGTgaacattttcaacatttggaAGTT
TCAAATTACGGGGTTTCGCCACACCgccgtcaaggattttgcagtggGGA
CCCTCGTAAGCCCAACCTAAATATTTATAGGCTTACGCGTaagggtagtt
gaacccgactggggatgcggTCCGATAGAAAATTGGCCctgctcccttta
gagcttatTTAGCGAGGGGGGCCgcccgccaatccgccatcggaatatga
GATAACTTGATAACTAGTGAACTCTATAGTGCAACATTGGGAATCGAACA
AGGGGCTCTGCAAAGAAGGCCATCCATTACCTTGCTTGAAAGCGAGATAA
TTTgatcaagctgaaaaatcaacTAATATAGGTTAAATTTCTTTCTTGAA
AGCTACTATAACTTCACATAGAAGAAGATTATTACGATATTATTAAAGCA
CAATTTATATTATATATGCAAACCCAGAAAAAGTAATATAAAATCACATA
ACATCAAACTGAAATTAGTTTTTATAAATGGAACCTTTAAATTTTTCAGG
TATTGAGATGAAGATCGCAAAGAGGTTGAAAACCGTCCataactgaaaat
tatttttgattttgacttttatcaaatcaaagTATATGCCGTAAACTCAG
AAAGTTTGTCGCCCATgacctttttcattttcaatgaaccGTCATGTTCC
AGCCAAGGCCAGATCAGTGCCGGGCCGTGAAAGTCAGGTATTACTTGAAT
TCTCGTCACAAAATGTAATGAATAATTATctaaattagaaaaataatcAT
AATAAATTTACTTTCTATTTAAATTAAAAgtcactttaaaattttgggcA
ACCTTTTTCTTCTCTCAGTAAAGTAATTTCATACAACATATATTGGTTTT
CTGCTTGTATCTTTTCGATAAGCATGCGTAGTTGCAagttttctttctca
taatgcGCTTGCTTGTTCAGTGTCTCTAATTCCTTACGTCGTCGGTCTTC
ACGTGACTTGCGTGCGGCCACGTTGTTCTTAATTCGTTTCTGCCAATAAT
CTTCCGTCTTATTATCTTCATCAACGAATTTACGCGAGTTTTTCTTTCCC
AACGGTTTCGGGTTGTATTTATAATGTCGATTATTGTGTGATTTTCGATC
TCGCATCATTAATTTGAAATCGTAACTGCTGTTTACGTCGTAATTTTGTC
CATCGTAAGGTTCAGTTTTCGTAACTACGTTGCCGGCGCTGCAAATGTCT
TTTTCGTTTCTTTGCTCGCTactcatttttagtttttggaATTCTTATAT
TTTCTGATGATCTTCCGTTATCAGTTCCAGCCAAGTTTACTTGCTTCAAC
TTTACTCAATTTTCAACATCTCAAAGCAtcctaaaactcaaaaacaacgt
tgcatccaattttttttgcgCTGGCCAA Run BLAST on NCBI transcript from alignment at sc0000144:269531..275478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012410 ID=TCONS_00012410|Name=TCONS_00012410|organism=Clytia hemisphaerica|type=transcript|length=5948bp|location=Sequence derived from alignment at sc0000144:269531..275478+ (Clytia hemisphaerica)
ATTTTCTTCATCCCAAGATATTTCTGTCTTTTACCTTCTGGATCTAGCGG
GCTTGAGACATCGGTCAAGGCACTTCACAATTTGACTATAATTCACTACT
TATTGAATTATTCCAACCAGCTTTTCCGTGACTTCGATCAAACTTCGATC
AATAATAAAAAACAGTAGAACGAAAACAATTCAACATGGCGGAAGTTGAG
CAACTCAATTTATCAAACAGTAAGAATGCAAACAAGAAGAGCCCacgaaa
caacaacaacaacaacagtgaGAAGAAACCAAAAACTCAACGATCAACCT
CAAAATCAGGTATACTTATTATTATCACTTTTAAGTACAGAGCGTTTTTA
AACGTTTCCACGTGTCAGCAAATAACGACAATGGTTTTGAAGCAATTTTA
ACTTTTCACGGATAAGATTTGAAGTATCAgccaaaaactttaattttcat
tcgAAGATTGTAGAATagtgatttttcagtttcataatttttatttcaaa
catttaattagaaaattttgaaaaaagttgtgatttttggGTCAAGACTC
ATGTCGGAAAATGTCGACATCGACACGGAAAGGGTTGTAGTCAAATTCAT
CGTTTAGATCTAACCTTTGTTCTTGTATTCAACTCTTCTTTCCGTTCGCC
CGTTCTTACTTTTGCAGctttttctcgggatcggctctttagtgagttta
tgtattcgagataaatcgagggggacggtataaagcaaagttgacatgtt
tCCAAAATCACAGTCCACTTTGCTTGACGACagtaaaaaaacaccaaaat
accgtcgtctgttaaGGTgggcaaaggcgatatagagctgtacatcaact
atcgactttgttttgtgtCATTTCTCTTACCGTCGCCGTCGGGTATTAGC
TTATTCTAAGACGGAAAATGGTCATGCCTTAAATGTGACGGAGGCCGGTT
TTCTATTCTTCTACCCTACTGTTTAATTAAATTTGTCCATTGGTttagaa
aaattactttcattaTAGCCTCCACTACACCACGAACCACTCCTCGTGGT
GACGATTTACCCCAAGTGACATGCGCAAGAACGCTGGTCCCTCTCAAAGT
AGAaggcgatgacgtcatcaaaggtGATATCCATTCTTACAGGACTATCA
AAGTTCTCCGAGAAGATCGCAAAGACTTGTTGAAAAAGCTTGCAGCATTG
GACGAACGCGTTGAATCTATGTTGCGAATGAAGGGTATCTACCAACGTTT
TTGTATGGCAATGCAGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTA
ACAACCAAGGTGTTCCTTATGTCAACAATGTCAAAcatctggtcagtaaa
atgcaCGAGGAGTTTAACACTGAAGAAGTGAAATCGGAAAttgagaaaat
gaaagaacaacAGGTTCCCTTCTTGGATGACTTACTTGgacaatttgaaa
atttccagaAACTTTGTGAAAGCATCATTGTGACTCACATTCATTATCAC
GTgacctttttggaagatttccATTTAGTTGCTGGAAAGATTAGAGGTAG
AACGCCATTTTTATTAGAGGGGATTTCGAGGGAATCGAACTTTTATTCAT
TCCACTAATGTCtcaaactttgaagaaaatgtaaaaaaactgTTTTCGTC
TCTCGTCGGAGAAACTGATATTTTAACTACTTTAACCTATATATTTTTTT
NAACGATCAACCTCAAAATCAGGTATACTTATAATTATCACTTTTAAGTA
CAGAGCGTTTTTAAACGTTTCCACGTGTCAGCAAATAACGACAATGGTTT
TGAAGCAATTTTAACTTTTCACGGATAAGATTTGAAGTATCAgccaaaaa
ctttaattttcattcgAAGATTGTAGAATTGTGATTATTATCGACATAGG
CACGAAAAGGGTTGTGGTCAAATTCATCGTTTAGATCTAACCTTTGTTCT
TGTATTCAACTCTCCGTTTGTTCGCCCGTTCTTACGTTTCCAGctttttc
tcgggatcggctcattagcgagtttatgtatttgagataaatcgaggggg
acggtataaaggaaagttgacatgtctccgaaatcaccgtccactttgct
cgacgacggtaaaaacaccaaaataccgtcgtctgtttaggttagcaaag
gcgatatagagccgtacattaactatcgactttgttttgtgtCATTTTTC
TTACCGTCGTCTTCGATATCATTCGATACATAAACCGTCGGGTATTAGCT
TATCCTAAGACGGAAAATGGTCATGCcttaaatgtgacggagcctggtTT
TCTATTCTTCTACCCTACTGTTTAATTAAATTTGTCCATTGGTttagaaa
aattactttcattaTAGCCTCCACTACACCACGAACCACTCCTCGGGGTG
ACGATGTACCCCAAATGACATGCGCCAGAACGCTGGTCCCTCTCAAAGTA
GAaggcgatgacgtcatcaaaggtGATATCCATTCTTACAGAACTATCAA
AGTTCTCCGAGAAGATCGCAAAGACTTGCTGAAAAAGCTTGCAGCATTGG
ACGAACGCGTTGAATCTATGTTGCGAATGAAGGGTATCTACCAACGTTTT
TGTATGGCAATGCAGAATTTTTCAACAGCTATTTTCAAGCTTGACCGTAA
CAACCAAGGTGTTCCTTATGTCAACAATGTCAAAcatctggtcagtaaaa
tgcaCGAGGAGTTTAACACTGAAGAAGTGAAATCGGAAAttgagaaaatg
aaagaacaacAGGTTCCCTTCTTGGATGACTTACTTGGACAATTTGGAAA
TTTCCAGAAACTTTGTGAAAGCATCATTGTGACTCACATTCATTATCACG
TgacctttttggaagatttccATTTAGTTGCTGGAAAGATTAGAGGTAGA
ACGCCATTTTTATTAGAGGGGATTTCGAGGGAATCGAACTTTTATTCATT
CCACTAATGTCtcaaactttgaagaaaatgtaaaaaaactgTTATCGTCT
CTCGTCGGAGAAACTGATATTTTAACTACTTTAacctatatattttttta
tttgcgAATGTATATTCATTGTTTGGTTTTTCCCCCAGGATAAAGTAGTA
AAATCTTGCAAAATGAGATAAATAGCCTAGCTATTAAGCTACGGTCATCA
GAGGCCTGTTACCACTTCTTGTAGTAATTATGTAAACAATCTTTTTGACA
GGCATGATGAAGACCATTATCACACTTATGTATGACGACGAAAGTACATC
TAAAGACGATGATGATAATATCATTAAAGATCAAGATATCCAAGAAGCTG
CCATCAATGTGAgcattttttctgattcttatTTTTGGTCATTGTCTGTG
TTCAAACATATATGCTGGATAAGAGGGCAACTGTCTTCATTTAGGCATAT
ATTAATGTGTCTAGTTTAGTAGTGGAGCACGtgaaagaaaattcaaactt
GAGGAGACCAGAGTCAAAATAGTTTTCTTTCTACAACAAAATCAAGGGAT
CTGACCCGGTCTTCCCGCGCTTCAAGGGTCGAAAGGTTGATTTGTTTCTC
CTTGTATTCTCTAGGATGAGGACGCAAACGAGGAAGAAACCAAAGAAGAG
TCTAACAACAACAAATCCAACAACAATGAATTGGTCTCTGGTAATAACAA
GAACACCTTGGTCATCTCCAATGGTCAACATTTACCATCTGTCACCAACA
CTGATGAACAAGAAGAAAAACCACCACAAGATCCATCCTCAACACCTCAA
GAACTTCACCAGCTCCGTAAAGTCTTCAGTAATATCAACGACCTTTTAAG
TCGCATCCAGCGTCTATCTCTCGGCAACCCAAGAATCCAATCCATGAAAG
ACGCTTCCTTATCCATTGCAGAGGTTTTGATTGATGCTGGGCCATTGGTT
AAGCACTGGCAAACACAAAACATTCCCTGTATCGACTCTATTGAGAATTT
CATTACCAAGATGCTGAAAGTGGCCACTATCCGTCGACCTTCCGAAAAAC
ATATCGAACAAATGAAGATGTTATTAGGAGTCTGGGACGGGCGTGTCTTA
ATTGTAGCCAAATACATGGCCATCCAGAATTAACTTTAAACTATACATGC
GTTGATAATTGAAACAAGCATGATGCTCAAATTAAAACTGAAAACATTTT
CACTTGAatcttgaatttattttttaaattttaaccgAATAGAGCATAGA
ACTTTCTGGTAAATCACAGACGATTCTAATCCTAAATtgtttggattcat
gaaagcgGTAAATTAACTTCAATATTGAATATTCAGTagtttaacatttt
ttttacttgtgcATGTAATTATTTTAATTGGTTCTTTTTTGAACAGGGAA
AACTCGAATTTTTCAGAACTTCAATAATATAGCACTCAACCCTTATCctc
aaaaatacatttaaacTTTTAGAAATGCTTCAAATATAAAACTGCCGTTC
GCCAGATGGAGATAATGTGCGTCCACTTGCTAAGCGAACCGCAtagttat
ctggcacccagatgcagaCATTTATATTTGACACACTGAAGGTCGTgaac
attttcaacatttggaAGTTTCAAATTACGGGGTTTCGCCACACCgccgt
caaggattttgcagtggGGACCCTCGTAAGCCCAACCTAAATATTTATAG
GCTTACGCGTaagggtagttgaacccgactggggatgcggTCCGATAGAA
AATTGGCCctgctccctttagagcttatTTAGCGAGGGGGGCCgcccgcc
aatccgccatcggaatatgaGATAACTTGATAACTAGTGAACTCTATAGT
GCAACATTGGGAATCGAACAAGGGGCTCTGCAAAGAAGGCCATCCATTAC
CTTGCTTGAAAGCGAGATAATTTgatcaagctgaaaaatcaacTAATATA
GGTTAAATTTCTTTCTTGAAAGCTACTATAACTTCACATAGAAGAAGATT
ATTACGATATTATTAAAGCACAATTTATATTATATATGCAAACCCAGAAA
AAGTAATATAAAATCACATAACATCAAACTGAAATTAGTTTTTATAAATG
GAACCTTTAAATTTTTCAGGTATTGAGATGAAGATCGCAAAGAGGTTGAA
AACCGTCCataactgaaaattatttttgattttgacttttatcaaatcaa
agTATATGCCGTAAACTCAGAAAGTTTGTCGCCCATgacctttttcattt
tcaatgaaccGTCATGTTCCAGCCAAGGCCAGATCAGTGCCGGGCCGTGA
AAGTCAGGTATTACTTGAATTCTCGTCACAAAATGTAATGAATAATTATc
taaattagaaaaataatcATAATAAATTTACTTTCTATTTAAATTAAAAg
tcactttaaaattttgggcAACCTTTTTCTTCTCTCAGTAAAGTAATTTC
ATACAACATATATTGGTTTTCTGCTTGTATCTTTTCGATAAGCATGCGTA
GTTGCAagttttctttctcataatgcGCTTGCTTGTTCAGTGTCTCTAAT
TCCTTACGTCGTCGGTCTTCACGTGACTTGCGTGCGGCCACGTTGTTCTT
AATTCGTTTCTGCCAATAATCTTCCGTCTTATTATCTTCATCAACGAATT
TACGCGAGTTTTTCTTTCCCAACGGTTTCGGGTTGTATTTATAATGTCGA
TTATTGTGTGATTTTCGATCTCGCATCATTAATTTGAAATCGTAACTGCT
GTTTACGTCGTAATTTTGTCCATCGTAAGGTTCAGTTTTCGTAACTACGT
TGCCGGCGCTGCAAATGTCTTTTTCGTTTCTTTGCTCGCTactcattttt
agtttttggaATTCTTATATTTTCTGATGATCTTCCGTTATCAGTTCCAG
CCAAGTTTACTTGCTTCAACTTTACTCAATTTTCAACATCTCAAAGCAtc
ctaaaactcaaaaacaacgttgcatccaattttttttgcgCTGGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012410-exon-sc0000144-1491911889:269531..269839 | TCONS_00012410-exon-sc0000144-1491911889:269531..269839 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1510915933:269531..269839 | TCONS_00012410-exon-sc0000144-1510915933:269531..269839 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1575043694:269531..269839 | TCONS_00012410-exon-sc0000144-1575043694:269531..269839 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1491911889:271898..272425 | TCONS_00012410-exon-sc0000144-1491911889:271898..272425 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1510915933:271898..272425 | TCONS_00012410-exon-sc0000144-1510915933:271898..272425 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1575043694:271898..272425 | TCONS_00012410-exon-sc0000144-1575043694:271898..272425 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1491911889:272732..272838 | TCONS_00012410-exon-sc0000144-1491911889:272732..272838 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1510915933:272732..272838 | TCONS_00012410-exon-sc0000144-1510915933:272732..272838 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1575043694:272732..272838 | TCONS_00012410-exon-sc0000144-1575043694:272732..272838 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1491911889:273095..275478 | TCONS_00012410-exon-sc0000144-1491911889:273095..275478 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1510915933:273095..275478 | TCONS_00012410-exon-sc0000144-1510915933:273095..275478 | Clytia hemisphaerica | exon |
| TCONS_00012410-exon-sc0000144-1575043694:273095..275478 | TCONS_00012410-exon-sc0000144-1575043694:273095..275478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:269531..275478 + |
Blast
The following BLAST results are available for this feature:
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