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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012404 ID=TCONS_00012404|Name=TCONS_00012404|organism=Clytia hemisphaerica|type=transcript|length=3763bp
GTGTTATAAAGATGATTATTTCCAACGCAATACTCATTATTTGATCATTA
GATGCCTCCCTTTTTTCTTTCTCTGAATACATCAAAATAACTGATTTGTT
ACTCTTATCGCAATGATATGTAATCCTTTTGAAACATTAGATCATCGTTT
TAGAAAATGACCTGATACAAGCCATAAAAATTGGAGATTGGAGATTGGAC
AAATGAGTAGCTTAGCTATCCGAGCTAGAAGGaggatttttctttgaaaa
tacaagaaCAACTCCTGTATTCTCCAAGGAAAATAAATTGCATACTTTCC
AAGAAAAATATCATCTAAATTTCCATACTTTTCGACACATCAATTGACCA
GAATTAATAATGAACAAgctcaaattttctaaatttgctATAAACATAAA
CCTAGCGATTGTGACGAATCATTATGACTTGactctttttattttatatt
atcaACACCATGTTATGTGtacaaataaaattattaacaattaattcaaa
aaaataaaaatcggttcataaattacaaaaatgatacgtaattaaaataa
ctttcGATCTCTTCTTCCATTTCAGGAGAATCAATTCACCAACCATGACA
AGCTGGTGGAAATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcga
caaaataaaaagttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAA
TCCTCCCCCAAGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCT
TGCCTAAGGAAGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAA
AGTGATCCATATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATC
TGGCTTGACCATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTC
GCTCAAAAACCAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTC
TCGAATTCCTTGAAACCCTCATTTTATCCTCGGAAAACAGGAAGCCCATC
ATCATGCACACTTCTCCCGTCGCCATCTTCGAGCAGTGTTTCCATGACGT
CGTCAACAAGTGATCAACATGGTAGCACAGGATTAGGGAGCAGCTATCAT
CATTACTTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACTGTAG
CAATAATAATAATGACTCCCTGGTGATGTCATCTACATCATCCATGGATA
GTGTTGGCGGCGGCGGTGGTGGTGGAAATTGTGGTGTGAGTAGTGGTGGT
AGTGGTGCAACGCCCTGGTATTCGTCATTGAACAATATACATTCCCCAGT
GCTACCATTGAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACT
ACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCT
ACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGG
TGGGGTGCGTTATCTTTACCCGCCCTCGTATCACCAGCATTGCAGTAATA
ATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATA
TGTCTTTGAACTGGTGAGCTATTTTCCTTTGCCCATCGGATAATATATAT
CTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTT
AGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCA
TCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACG
ATGATGGCTTTTATTTTGAGAGCCNGTAGCACAGGATTAGGGAGCAGCTA
TCATCATTACTTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACT
GtagcaataataataataactcCCTGGTGATGTCATCTACATCATCCATG
GATAGTGTTGGCGGCGGCGGTGGTGGTGGAAATTGTGGCGTGAGTAGTGG
TGGTAGTGGTGCAACGCCCTGGTATTCGTCATTTAACAATATACATTCCC
CAGTGCTACCATTGAGACTTGAAGACTCGTCCCACTATTCGTCTCACCAT
TACTACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGCTACACA
TTCTACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAAACAATA
CGGGTGGGGTGCGTTATCTTTACCCGCCCTTGTATCACCAGCATTGCAGT
AATAATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTG
GATATGTCTTTGAACTGGTGAGCTATTTTCCTTTGCTCATCGGATAATAT
ATATCTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATT
CGTTAGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGTATTCTA
ATCATCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTA
GACGATGATGGCTTTTATTTTGAGAGCCGTATCTTTCTGTCAAGATAGCG
TTTAGTGGTTTTTGATGTGATTTTGATTTAGTTATTTAGATTATTTATTT
AGAAAGTGGGTTATTTTTGGTTTCGttgaatttcaaagaattttctcTGT
AAATACTATTAAGAccaaaaagttaaattaaaagagTTTTTCCCAATTCA
TGTAATGAATTTgggatttttagaaatttattattttattgttattagat
ttttaagaacattaaaaaaatgagaatttcagattttgttacattttgtt
agattttgatattttttaaacataatttatttttttgattgtcAATGTGT
GTCAAAAATTCTAATCACGagtttcaaacaaaaatgaagGACGAATCAAA
TATCAACACCgagaatattcaaaatttgcaaaGTCATTCAATCGAACCTT
TAATTTGGAGATTTCGATTTCATACTTAATTGATgagtttctattttttt
gtgTGTATTCTTTTCATTGGTCGATTTCAGTTTTAAACCGTTTATCCCTA
AACtgctttaatgggataaactttttgcggggattaaatttcgcagattt
cgcgaaaatccgcgaaattaagtcccaatggaaatttggaagggcctctt
ccgcgaaatatttctaaacaaaactcaaaatatgtcagataaatactatt
tgaatggttacttgcatcaaagaagcgccaataatgtgtatttcaacaac
caacatgcatgatttgccAGTAAAAgccacaaaatcgtgaaaataatGGC
ACCCAATAGTGttacccgcgaaattaagtccccgcgaaatttttgaattt
cgcggatcgACCTAGGCCCaaccacgaaatttaatccccgcgaaagttta
tcccattaaagtagtgaTTTTTGCAGTTTTTGTGCATTCCAATGAAAAGC
AATGGTTGATAGCGATACTCCcatcatttaaaaaatctttaatttcgTTT
TCATTAAGGATTTTAATTCAACCTACCGATGCATCTAATCCTTAAGGGCT
CTCTGACcatagtaaaaaaaataaaaaatatgaaaaatcgcTATGATCAA
AGCCCTTAAGGTATATCATATCAGTTAGAAATTTTTACAGTCATTCGAAA
GaagtttatttttgttaaagtttttcgTTAAGTTGCATTTTgggatttct
tttaaaaacaacattataaaaaatgatttaaaaaaatcgaaaccatacat
tatttattcatttgttAAACCTTCGAGCACCCCgggtggggggggggcac
aCTTGTAAATTTA Run BLAST on NCBI transcript from alignment at sc0000144:226633..232001+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012404 ID=TCONS_00012404|Name=TCONS_00012404|organism=Clytia hemisphaerica|type=transcript|length=5369bp|location=Sequence derived from alignment at sc0000144:226633..232001+ (Clytia hemisphaerica)
GTGTTATAAAGATGATTATTTCCAACGCAATACTCATTATTTGATCATTA
GATGCCTCCCTTTTTTCTTTCTCTGAATACATCAAAATAACTGATTTGTT
ACTCTTATCGCAATGATATGTAATCCTTTTGAAACATTAGATCATCGTTT
TAGAAAATGACCTGATACAAGCCATAAAAATTGGAGATTGGAGATTGGAC
AAATGAGTAGCTTAGCTATCCGAGCTAGAAGGaggatttttctttgaaaa
tacaagaaCAACTCCTGTATTCTCCAAGGAAAATAAATTGCATACTTTCC
AAGAAAAATATCATCTAAATTTCCATACTTTTCGACACATCAATTGACCA
GAATTAATAATGAACAAgctcaaattttctaaatttgctATAAACATAAA
CCTAGCGATTGTGACGAATCATTATGACTTGactctttttattttatatt
atcaACACCATGTTATGTGtacaaataaaattattaacaattaattcaaa
aaaataaaaatcggttcataaattacaaaaatgatacgtaattaaaataa
ctttcGATCTCTTCTTCCATTTCAGGAGAATCAATTCACCAACCATGACA
AGCTGGTGGAAATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcga
caaaataaaaagttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAA
TCCTCCCCCAAGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCT
TGCCTAAGGAAGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAA
AGTGATCCATATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATC
TGGCTTGACCATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTC
GCTCAAAAACCAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTC
TCGAATTCCTTGAAACCCTCATTTTGTAAGTATTCAAGCTCGTAGGACTT
CTTTTTCTATGGTTTTCCATGCTTCATTAGCAAGACCAGAAGTGCTCAGT
GCTATCGCAGCATGTTCAAATGGCCTATGTTCTGTTCGCTGTTCTGTCCG
TTCTTCTTTAAGGAGTGAATTCTTGTTATTGTTTCTGCTAAAAAACGCAA
TAAAGATGACGAAAAATGTTTATAGAACTGCGGTTGAAAAACTCGAAATT
GATCAGACAGGATCAACTATTgataaaacataattttttagcaatttttt
ttatcttatatCCTGTTTCAAACCTACTACTTTTGCTACTTTAATACTCT
TTATTCGACCTAGTTTAAGATAaatcaaaatactttttaaacatgagaat
ttttaaaggttttatcaAGAAAAATGATTGGACTTTGGAAGGATTTTCTC
AACAATAAATAACGCTCCCtctttgtttctatttttaCGTTTCTATTTCT
ATTACTCTTGCACAGACATTTTTCTCATAAATGTCAAGGTGTATCAACTT
TAAACACatcaaatttcaataatatggaaggctgttttttttaaaagaac
tattgcacaattttagttttttatcaTTCATTTAAAAGATATTTGACCTC
GATCTCACATTAAGAGGCAATTAAGAAGAAAATATCACAAACTTTTAACC
TTATGAATTTCTAATATCAATCTACgctttcaattttcaaacttctgTGT
AATCAGACCCGATATACAAAGCGATAAACTTTTGTTGTAAGATGTTTCCT
AATcccaataaaatattgaaattaattGAACTAATGCTTTCTTCAGATCT
TCAGACATCTCCCTCTACTCATTAACATCAATTCCTAACATCTTCATTAA
ACTTTAGATCCTCGGAAAACAGGAAGCCCATCATCATGCACACTTCTCCC
GTCGCCATCTTCGAGCAGTGTTTCCATGACGTCGTCAACAAGTGATCAAC
ATGGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTCTCTTATGAT
AATATACCTCAAGGAGGCAACAATAACTGTAGCAATAATAATAATGACTC
CCTGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTG
GTGGTGGAAATTGTGGTGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGG
TATTCGTCATTGAACAATATACATTCCCCAGTGCTACCATTGAGGTATTT
CCTGTTTCCACTTCTCTAATGGGCAGGATTGCGATTTTAGCAAGTTAATC
AGTCATACTTCTTTCTTTAACTTGGCCTCTGTGGAAGAGATTATTTCATG
GTTTTTAATACTTTATTAGCATTCTTTAAATGGAGTCTACTTTCTCTGTT
TGGGAAGGGAACTCTGGCAGAAATATGTTCTGGGTATCATAGGCGGTTTT
CTTCAACCCTGATACCCGAGGCCTATTTTGAAACTATAAAAGTCTTGCAA
AATGTCACCTCCTAGTTAACCAGTGTGTAATTGTAAGGTTAAATTATTTC
TGAAATGATTACTTCTTAACAGAACCAACCATTTTAATATATTCATTTTC
CCTCAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACA
ACAATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCTACACCG
CCCAACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGT
GCGTTATCTTTACCCGCCCTCGTATCACCAGCATTGCAGTAATAATTATT
TTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTT
TGAACTGGTGAGCTATTTTCCTTTGCCCATCGGATAATATATATCTGCAT
TGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAA
TTGATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCATCAATT
TTGTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATG
GCTTTTATTTTGAGAGCCNGTAGCACAGGATTAGGGAGCAGCTATCATCA
TTACTTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACTGtagca
ataataataataactcCCTGGTGATGTCATCTACATCATCCATGGATAGT
GTTGGCGGCGGCGGTGGTGGTGGAAATTGTGGCGTGAGTAGTGGTGGTAG
TGGTGCAACGCCCTGGTATTCGTCATTTAACAATATACATTCCCCAGTGC
TACCATTGAGGTATTTCCTGTTTCCACTTCTCTAATTGGTAGGATTGCGA
TTTTAGCAAGTTAATCAGTCATACTTCTTTCTTTAACTTGGCCTCTGTGG
AAGAGATTATTTCATGGTTTTTAATACTTTATCAGCATTTTTTAAATGGA
GTCTACTTTCCCTGTTTGGGAAGGGAACTCTGGCAGAAATATGTTCTGGG
TATCATAGGCGGTTTTCTTCAACCCTGATACCCGAGGCCTATTTTGAAAC
TATAAAAGTCTTGCAAAATGTCACCTCCTAGTTAACCAGTGTGTAATTGT
AAGGTTAAATTATTTCTGAAATGATTACTTCTTAACAGAACCAACCATTT
TAATATATTCATTTTCCCTCAGACTTGAAGACTCGTCCCACTATTCGTCT
CACCATTACTACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGC
TACACATTCTACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAA
ACAATACGGGTGGGGTGCGTTATCTTTACCCGCCCTTGTATCACCAGCAT
TGCAGTAATAATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTG
AGGTTGGATATGTCTTTGAACTGGTGAGCTATTTTCCTTTGCTCATCGGA
TAATATATATCTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTG
TAAATTCGTTAGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGT
ATTCTAATCATCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAG
ATTGTAGACGATGATGGCTTTTATTTTGAGAGCCGTATCTTTCTGTCAAG
ATAGCGTTTAGTGGTTTTTGATGTGATTTTGATTTAGTTATTTAGATTAT
TTATTTAGAAAGTGGGTTATTTTTGGTTTCGttgaatttcaaagaatttt
ctcTGTAAATACTATTAAGAccaaaaagttaaattaaaagagTTTTTCCC
AATTCATGTAATGAATTTgggatttttagaaatttattattttattgtta
ttagatttttaagaacattaaaaaaatgagaatttcagattttgttacat
tttgttagattttgatattttttaaacataatttatttttttgattgtcA
ATGTGTGTCAAAAATTCTAATCACGagtttcaaacaaaaatgaagGACGA
ATCAAATATCAACACCgagaatattcaaaatttgcaaaGTCATTCAATCG
AACCTTTAATTTGGAGATTTCGATTTCATACTTAATTGATgagtttctat
ttttttgtgTGTATTCTTTTCATTGGTCGATTTCAGTTTTAAACCGTTTA
TCCCTAAACtgctttaatgggataaactttttgcggggattaaatttcgc
agatttcgcgaaaatccgcgaaattaagtcccaatggaaatttggaaggg
cctcttccgcgaaatatttctaaacaaaactcaaaatatgtcagataaat
actatttgaatggttacttgcatcaaagaagcgccaataatgtgtatttc
aacaaccaacatgcatgatttgccAGTAAAAgccacaaaatcgtgaaaat
aatGGCACCCAATAGTGttacccgcgaaattaagtccccgcgaaattttt
gaatttcgcggatcgACCTAGGCCCaaccacgaaatttaatccccgcgaa
agtttatcccattaaagtagtgaTTTTTGCAGTTTTTGTGCATTCCAATG
AAAAGCAATGGTTGATAGCGATACTCCcatcatttaaaaaatctttaatt
tcgTTTTCATTAAGGATTTTAATTCAACCTACCGATGCATCTAATCCTTA
AGGGCTCTCTGACcatagtaaaaaaaataaaaaatatgaaaaatcgcTAT
GATCAAAGCCCTTAAGGTATATCATATCAGTTAGAAATTTTTACAGTCAT
TCGAAAGaagtttatttttgttaaagtttttcgTTAAGTTGCATTTTggg
atttcttttaaaaacaacattataaaaaatgatttaaaaaaatcgaaacc
atacattatttattcatttgttAAACCTTCGAGCACCCCgggtggggggg
gggcacaCTTGTAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012404-exon-sc0000144-1491911889:226633..227607 | TCONS_00012404-exon-sc0000144-1491911889:226633..227607 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1510915933:226633..227607 | TCONS_00012404-exon-sc0000144-1510915933:226633..227607 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1575043694:226633..227607 | TCONS_00012404-exon-sc0000144-1575043694:226633..227607 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1491911889:228490..228826 | TCONS_00012404-exon-sc0000144-1491911889:228490..228826 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1510915933:228490..228826 | TCONS_00012404-exon-sc0000144-1510915933:228490..228826 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1575043694:228490..228826 | TCONS_00012404-exon-sc0000144-1575043694:228490..228826 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1491911889:229189..229892 | TCONS_00012404-exon-sc0000144-1491911889:229189..229892 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1510915933:229189..229892 | TCONS_00012404-exon-sc0000144-1510915933:229189..229892 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1575043694:229189..229892 | TCONS_00012404-exon-sc0000144-1575043694:229189..229892 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1491911889:230255..232001 | TCONS_00012404-exon-sc0000144-1491911889:230255..232001 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1510915933:230255..232001 | TCONS_00012404-exon-sc0000144-1510915933:230255..232001 | Clytia hemisphaerica | exon |
| TCONS_00012404-exon-sc0000144-1575043694:230255..232001 | TCONS_00012404-exon-sc0000144-1575043694:230255..232001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:226633..232001 + |
Blast
BLAST of TCONS_00012404 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.922e-19 Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 3
Query: 546 NNFRSLLPFQE-NQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 911
NFR L E +QF+ NH KL ++W KAHY+E E + + L A+ ++RVR++ P PRTI +G + +++ G+L+ W + +PYPS EK++LA +GLT QV WF N R+R +
Sbjct: 61 GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTI-WDGEETSYCFKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
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