|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012399 ID=TCONS_00012399|Name=TCONS_00012399|organism=Clytia hemisphaerica|type=transcript|length=3050bp
CGAAGATTAAAGCAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGA
GGAAAAAGCCAGTAATACTGTGGAACATGTGCAACAGCTTTTACAACTTT
GGAGGCATTATACAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAAC
ATTGCAAACGATATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGC
CTTGTCTGTGTTTCTCAATGAACTTCCAAATACCGATGTTTATTGGACTG
AGGAATGTATTCTTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGAC
ACAGACACTGTGAAAAAGATTCTCAAGGTCAGTTTTCTTATtctattttg
tcatttttcgtGTAGATAGGGCCTTATACGcaacattcgaattttcttca
aaaacaaagtatgaaaaacgaaagtgaaagtcagAAGCGCTCGCTGTGCT
AAAGAACCACAATTCTCACACACATTTCACAGTTCAGGTCGAgtcaaacc
aaaacaaatcagcttaaaaaacaaaagacaagAAACATTGAATGGAGGAA
ACATGATATACTTTTGGAGAATCAATTCACCAACCATGACAAGCTGGTGG
AAATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcgacaaaataaa
aagttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAATCCTCCCCC
AAGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCTTGCCTAAGG
AAGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAAAGTGATCCA
TATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATCTGGCTTGAC
CATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTCGCTCAAAAA
CCAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTCTCGAATTCC
TTGAAACCCTCATTTTATCCTCGGAAAACAGGAAGCCCATCATCATGCAC
ACTTCTCCCGTCGCCATCTTCGAGCAGTGTTTCCATGACGTCGTCAACAA
GTGATCAACATGGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTC
TCTTATGATAATATACCTCAAGGAGGCAACAATAACTGTAGCAATAATAA
TAATGACTCCCTGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCG
GCGGCGGTGGTGGTGGAAATTGTGGTGTGAGTAGTGGTGGTAGTGGTGCA
ACGCCCTGGTATTCGTCATTGAACAATATACATTCCCCAGTGCTACCATT
GAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACAACA
ATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCTACACCGCCC
AACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGTGCG
TTATCTTTACCCGCCCTTGTATCACCAGCATTGCAGTAATAATTATTTTG
CCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTGA
ACTGGTGAGCTATTTTCCTTTGCTCATCGGATAATATATATCTGCATTGA
CGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATTG
ATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCATCAATTTTG
TGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATGGCT
TTTATTTTGAGAGCCGTATCTTTCTGTCAAGATAGCGTTTAGTGGTTTTT
GATGTGATTTTGATTTAGTTATTTAGATTATTTATTTAGAAAGTGGGTTA
TTTTTGGTTTCGttgaatttcaaagaattttctcTGTAAATACTATTAAG
AccaaaaagttaaattaaaagagTTTTTCCCAATTCATGTAATGAATTTg
ggatttttagaaatttattattttattgttattagatttttaagaacatt
aaaaaaatgagaatttcagattttgttacattttgttagattttgatatt
ttttaaacataatttatttttttgattgtcAATGTGTGTCAAAAATTCTA
ATCACGagtttcaaacaaaaatgaagGACGAATCAAATATCAACACCgag
aatattcaaaatttgcaaaGTCATTCAATCGAACCTTTAATTTGGAGATT
TCGATTTCATACTTAATTGATgagtttctatttttttgtgTGTATTCTTT
TCATTGGTCGATTTCAGTTTTAAACCGTTTATCCCTAAACtgctttaatg
ggataaactttttgcggggattaaatttcgcagatttcgcgaaaatccgc
gaaattaagtcccaatggaaatttggaagggcctcttccgcgaaatattt
ctaaacaaaactcaaaatatgtcagataaatactatttgaatggttactt
gcatcaaagaagcgccaataatgtgtatttcaacaaccaacatgcatgat
ttgccAGTAAAAgccacaaaatcgtgaaaataatGGCACCCAATAGTGtt
acccgcgaaattaagtccccgcgaaatttttgaatttcgcggatcgACCT
AGGCCCaaccacgaaatttaatccccgcgaaagtttatcccattaaagta
gtgaTTTTTGCAGTTTTTGTGCATTCCAATGAAAAGCAATGGTTGATAGC
GATACTCCcatcatttaaaaaatctttaatttcgTTTTCATTAAGGATTT
TAATTCAACCTACCGATGCATCTAATCCTTAAGGGCTCTCTGACcatagt
aaaaaaaataaaaaatatgaaaaatcgcTATGATCAAAGCCCTTAAGGTA
TATCATATCAGTTAGAAATTTTTACAGTCATTCGAAAGaagtttattttt
gttaaagtttttcgTTAAGTTGCATTTTgggatttcttttaaaaacaaca
ttataaaaaatgatttaaaaaaatcgaaaccatacattatttattcattt
gttAAACCTTCGAGCACCCCgggtggggggggggcacaCTTGTAAATTTA Run BLAST on NCBI transcript from alignment at sc0000144:220635..232001+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012399 ID=TCONS_00012399|Name=TCONS_00012399|organism=Clytia hemisphaerica|type=transcript|length=11367bp|location=Sequence derived from alignment at sc0000144:220635..232001+ (Clytia hemisphaerica)
CGAAGATTAAAGCAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGA
GGAAAAAGCCAGTAATACTGTGGAACATGTGCAACAGCTTTTACAACTTT
GGAGGCATTATACAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAAC
ATTGCAAACGATATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGC
CTTGTCTGTGTTTCTCAATGAACTTCCAAATACCGATGTTTATTGGACTG
AGGAATGTATTCTTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGAC
ACAGACACTGTGAAAAAGATTCTCAAGGTCAGTTTTCTTATtctattttg
tcatttttcgtGTAGATAGGGCCTTATACGcaacattcgaattttcttca
aaaacaaagtatgaaaaacgaaagtgaaagtcagAAGCGCTCGCTGTGCT
AAAGAACCACAATTCTCACACACATTTCACAGTTCAGGTCGAgtcaaacc
aaaacaaatcagcttaaaaaacaaaagacaagAAACATTGAATGGAGGAA
ACATGATATACTTTTGGTAATTATAATACTTTGTGATGAAAAATGATTGA
TCTCCTCGTGGTTTTATCTTTGTTGGACTAAACTTTACACACTTTTTACT
CatcaaaagttctttttttcttcaaatagaAACTTATTTTGTAAGACAGC
TTGTAAGTAGTCACACTTTTTTTAGTGAATTTTGAATAGTAGAGCATTTC
AtgccaaaaaaagttttatctAACTGTCTTATATATTTAGACAAAAATGC
TTTTTATTTGTACATCATAGGCAGGGCCTTGCCGTGTATGGTGGCACACA
CCTAAGATGGTTTGCAAGTGCTAAAATAACActcctaaaatatacaagaa
tgTACAAAATCCTTTTTGCAAGGGCTAATAGCACACCATAATCTATGACA
TATCTTTTATGGAGTGCTATATTGACACACGCAAGTTATTGTTCATGGCA
AGGCCTGATAAGTAGTGTAAGGTAGGTATAGAGgagtttcaatgttttga
ttttgtaaggACGGACTGATGTGGGCAGTTAGTCActctagcgtcccgcc
aaaatgcgtatcaatgctgcgaaagcgctatattgtttacctgactctca
agcaaaaaatgtgccgcaaaacttctaaagggattcatggaaaaataacc
cggcgcttttaaatgaaattaacgTTCTCAAAatctatgagaaattgcct
aaaatttgacccATAGATGTaataatttgagccaagccaaccttgagaac
taatttgaagatcaacttcccaagaaaaagatctatggAGGAGATGGAAc
ccaccgccggataggctatttcccggaaattttgccggacctcaaagaCT
GACCCATTttcatgtgcggaattatttttactttagcgttaAACTtagcc
ttaaaaatcgaagcgctgtctcgggaattgaacgacaaattttggttggt
tgattttggctgctgcacgttttattttgtttcaaactttcaagttttta
ttaattgtcttccgaacttgattcaggtaactctcatccttgttgttgca
aatacatcctgtagatgactgatgttgttttttctgaaagctagattcct
agtgtgactaactggtgGGCAGGCGATTGCGCTTGATTATTAGAGGCAAA
TCAGGTAAAAGACTTACAATTTATATGGAAGCAAGTgaatatcaatcaaa
tttttgacaaCTACCAGTCATATCtcttcaaaatttatgaatGGTAAGGC
TGTTTACCTCTGAGAAAACAtgctaaaatttcttttcaaaagtccTACCA
GAGActttgtcaaaacaaaaaatctgctTGCCTCCAGCTTATGGTCTTTT
TGCCTCCAAAAGATCTGGCCATAAGTCACATGAGTAAACAAATGGCGTAT
CACAAAAGCCGTCAATAGTAGCCAAAACACtgactgaaaattttttaaag
aagtaaCTGTTGGATGTTGCAACAGATAGTAAGGAGTTTTTGCCTAGTTA
GGAAAGTATTTTACATCCCTGATCTAGTCTAGACACCCTTCAAGTTGCAT
ATTATCTAAACTCCACTGACTACATCActaaaacaatgataagaaaatat
ttaatgCATCGTTGTGATGCTGGGGTTTTTAACCATTCAACATGCCATCA
TGTCCTGCAAAAAGTCTATTAAGCCTATCTatcctaggggggggggcttt
ttctGATCAGGGGTGAAACAATTGTTAATAGCTCCCGAAATAATAGAGGT
TTTGGGATGAAAATAAATGTGATGTGATGtaaatttctaacttttattta
gtttcaaaataaaaaaaattcgacACCTAAaacttttcacaccttgagca
tgatgacatttctgacagtaaggtgtcacaaaaattggcACATCtcaaat
acaaatttatttttcgtgtcaaatatattgtttaaaccgtaatttattgt
atatttaggataaaataagcttTTTAGAACtcagccaaatttcatccaaa
aagacccactagatcacaagttaaggggtggtacatgAAAAGCCCCctcc
ctagttctgaaccgcccctaaaagtctagtatgaatagggttaaagccaA
ACTATTGTCAGAATTTTGTATGAAATGAAGATGGTTAGATCTTTCAATTT
CTTGAgtgtttttgaagaaagaaataGTTAATTTTTCTAGAAATGTCAAC
AAACTAAAAATGCATCGTCACATTAAGGGAACCAAATTGTCTTCCCAAGt
ctatttttggacctaccccggtgggctgtaggtcctataaattaacctct
gttcgttcgtccgttcgttcgtccgttcgttactagcttttctcgggatt
ggtcattagtttttcctaatttttggcacaaagatgcaaaatggtaatgc
ccaaaatgtgacggagcccgattttcgaaaaaaattcatttccggccgaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcgctaaac
gatatattttctgactgatttttttctcctcgcattgctatctaactttc
atcatcaggtaggtccattcagcatctagcttgttttaaTAAATActata
agttggtctaatatcaacaATCCAGATACCCTTCAGAGTTTGGAAAAAAA
GGAAGGTTGGAATCACTGAGTGAAACTATATTTCTTCTCTCAATCAGTCA
TTCTGACCTTCCTGTTATTCCTATCTCCTAAGAAGGGTGTAAGGATAAGA
TGATTACGGTATTGATCCAACATGTTCAAAATATACTGAAGCAAGACTTT
TCCTCAGAATTACCCTGTTGTGAGAGCTACAATGTTCTTTGTGTGCACag
acttgttaaaagcaaactaacttttttaaatgatcaattaggtctataag
atccaaaaaacgagtggtgagaaaaattttgaccattttgctggtcccca
tgtgacgtcatcacttttgctggggcttgaaaacgaaagttaaaattaGA
AGCTCTtatatggctcaaatgaaagatatttatccaaggattcaaaaaaa
tatcagaacatatacctgaaaatttttgagaagctataaaggaaaatagc
tcaaaaaatgacgtcatcgatgacgtcatcggcaattaaaaaatcgtcga
aatcgagaaatttttgtttcatttgaaagaggacctgcttgggaacaaaa
aatattactacagAAAACCTTGAATTTCAATTGATAGGAAATTATTCCGT
GAAATGCGTttgacttgactctcaagctttTTAAAGATTCCTGGGCGTGC
CCGAAACTAACCTTTCGTAggcaaatttaatgaattacaaaTTTGCTGAC
AGGGGCCTATAAGGAGAAATTCAGGTAGAAGAAAACCGATAGAAGAAAAT
ACTTTCAGGTATAAGTTATGATACTTTTTGGAACCCGtggaaaaatatct
ttcatttgagccatatatgagcttctaattttcactttcattttcaagcc
ccagcaaaagcgatgacgtcacatggggaccagcaaaatggtcaaaattt
ttctcaccactcgtttttgtgattttatggacctaattgatcatttaaaa
aagttagtttgcttttaacaactctgtgcacacgaagaaTGCTTTCAGAA
CATAGTGGCTCTCACTATGTACATAAGTGTAACatatctgaaaaatgaaa
acagccGGGTGTATCCCTTTAGATTAAACTTGTACTTAAAATTAACTTTT
TGTTGCCTAAGAAAAGAGAGAAGCAAagttagtcccaataaggttaGTAA
AATTAACaaacttttcctttttcttgctCCTCTTTagtcctgctaagggt
ccgacGGTCCAAAGTTGGGTGGTACACCCCCGGTCAGCTCCCAACCCTAA
TAACCACCTCCTCAGTATAACTAATGCCAAAACATAGGAAATGAGGGAGA
AAAGTTTTCATGTTTGTTGGTTGTACTTCCATCAGTTGTCATTGTCATTG
TTTCAAGAAAATCTATTAAATTTCTCCTCTCAAGAATCAATCTTCCTTGA
AAAACACAATAATGCATTTCTTGACAAGAGatctttgaatttttatttga
tgagTTTTAGCTCTGGTCTCTTCTCTTGAAAAGGTAGCGTAATCTTGAAA
GCTTCATGTCATGTTTAGCTTGAAACGAgcctttttcaaaataatcagaT
CGTATCTTTTAACAAACTATTCTATTCAACGTGTAGGAAAGTTAATgaaa
atgtatcaaaaaatgaaatattttcccCTTTTCAATCACAAAATCCTGGT
GTTATAAAGATGATTATTTCCAACGCAATACTCATTATTTGATCATTAGA
TGCCTCCCTTTTTTCTTTCTCTGAATACATCAAAATAACTGATTTGTTAC
TCTTATCGCAATGATATGTAATCCTTTTGAAACATTAGATCATCGTTTTA
GAAAATGACCTGATACAAGCCATAAAAATTGGAGATTGGAGATTGGACAA
ATGAGTAGCTTAGCTATCCGAGCTAGAAGGaggatttttctttgaaaata
caagaaCAACTCCTGTATTCTCCAAGGAAAATAAATTGCATACTTTCCAA
GAAAAATATCATCTAAATTTCCATACTTTTCGACACATCAATTGACCAGA
ATTAATAATGAACAAgctcaaattttctaaatttgctATAAACATAAACC
TAGCGATTGTGACGAATCATTATGACTTGactctttttattttatattat
caACACCATGTTATGTGtacaaataaaattattaacaattaattcaaaaa
aataaaaatcggttcataaattacaaaaatgatacgtaattaaaataact
ttcGATCTCTTCTTCCATTTCAGGAGAATCAATTCACCAACCATGACAAG
CTGGTGGAAATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcgaca
aaataaaaagttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAATC
CTCCCCCAAGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCTTG
CCTAAGGAAGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAAAG
TGATCCATATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATCTG
GCTTGACCATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTCGC
TCAAAAACCAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTCTC
GAATTCCTTGAAACCCTCATTTTGTAAGTATTCAAGCTCGTAGGACTTCT
TTTTCTATGGTTTTCCATGCTTCATTAGCAAGACCAGAAGTGCTCAGTGC
TATCGCAGCATGTTCAAATGGCCTATGTTCTGTTCGCTGTTCTGTCCGTT
CTTCTTTAAGGAGTGAATTCTTGTTATTGTTTCTGCTAAAAAACGCAATA
AAGATGACGAAAAATGTTTATAGAACTGCGGTTGAAAAACTCGAAATTGA
TCAGACAGGATCAACTATTgataaaacataattttttagcaatttttttt
atcttatatCCTGTTTCAAACCTACTACTTTTGCTACTTTAATACTCTTT
ATTCGACCTAGTTTAAGATAaatcaaaatactttttaaacatgagaattt
ttaaaggttttatcaAGAAAAATGATTGGACTTTGGAAGGATTTTCTCAA
CAATAAATAACGCTCCCtctttgtttctatttttaCGTTTCTATTTCTAT
TACTCTTGCACAGACATTTTTCTCATAAATGTCAAGGTGTATCAACTTTA
AACACatcaaatttcaataatatggaaggctgttttttttaaaagaacta
ttgcacaattttagttttttatcaTTCATTTAAAAGATATTTGACCTCGA
TCTCACATTAAGAGGCAATTAAGAAGAAAATATCACAAACTTTTAACCTT
ATGAATTTCTAATATCAATCTACgctttcaattttcaaacttctgTGTAA
TCAGACCCGATATACAAAGCGATAAACTTTTGTTGTAAGATGTTTCCTAA
TcccaataaaatattgaaattaattGAACTAATGCTTTCTTCAGATCTTC
AGACATCTCCCTCTACTCATTAACATCAATTCCTAACATCTTCATTAAAC
TTTAGATCCTCGGAAAACAGGAAGCCCATCATCATGCACACTTCTCCCGT
CGCCATCTTCGAGCAGTGTTTCCATGACGTCGTCAACAAGTGATCAACAT
GGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTCTCTTATGATAA
TATACCTCAAGGAGGCAACAATAACTGTAGCAATAATAATAATGACTCCC
TGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTGGT
GGTGGAAATTGTGGTGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGTA
TTCGTCATTGAACAATATACATTCCCCAGTGCTACCATTGAGGTATTTCC
TGTTTCCACTTCTCTAATGGGCAGGATTGCGATTTTAGCAAGTTAATCAG
TCATACTTCTTTCTTTAACTTGGCCTCTGTGGAAGAGATTATTTCATGGT
TTTTAATACTTTATTAGCATTCTTTAAATGGAGTCTACTTTCTCTGTTTG
GGAAGGGAACTCTGGCAGAAATATGTTCTGGGTATCATAGGCGGTTTTCT
TCAACCCTGATACCCGAGGCCTATTTTGAAACTATAAAAGTCTTGCAAAA
TGTCACCTCCTAGTTAACCAGTGTGTAATTGTAAGGTTAAATTATTTCTG
AAATGATTACTTCTTAACAGAACCAACCATTTTAATATATTCATTTTCCC
TCAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACAAC
AATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCTACACCGCC
CAACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGTGC
GTTATCTTTACCCGCCCTCGTATCACCAGCATTGCAGTAATAATTATTTT
GCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTG
AACTGGTGAGCTATTTTCCTTTGCCCATCGGATAATATATATCTGCATTG
ACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATT
GATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCATCAATTTT
GTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATGGC
TTTTATTTTGAGAGCCNGTAGCACAGGATTAGGGAGCAGCTATCATCATT
ACTTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACTGtagcaat
aataataataactcCCTGGTGATGTCATCTACATCATCCATGGATAGTGT
TGGCGGCGGCGGTGGTGGTGGAAATTGTGGCGTGAGTAGTGGTGGTAGTG
GTGCAACGCCCTGGTATTCGTCATTTAACAATATACATTCCCCAGTGCTA
CCATTGAGGTATTTCCTGTTTCCACTTCTCTAATTGGTAGGATTGCGATT
TTAGCAAGTTAATCAGTCATACTTCTTTCTTTAACTTGGCCTCTGTGGAA
GAGATTATTTCATGGTTTTTAATACTTTATCAGCATTTTTTAAATGGAGT
CTACTTTCCCTGTTTGGGAAGGGAACTCTGGCAGAAATATGTTCTGGGTA
TCATAGGCGGTTTTCTTCAACCCTGATACCCGAGGCCTATTTTGAAACTA
TAAAAGTCTTGCAAAATGTCACCTCCTAGTTAACCAGTGTGTAATTGTAA
GGTTAAATTATTTCTGAAATGATTACTTCTTAACAGAACCAACCATTTTA
ATATATTCATTTTCCCTCAGACTTGAAGACTCGTCCCACTATTCGTCTCA
CCATTACTACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGCTA
CACATTCTACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAAAC
AATACGGGTGGGGTGCGTTATCTTTACCCGCCCTTGTATCACCAGCATTG
CAGTAATAATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAG
GTTGGATATGTCTTTGAACTGGTGAGCTATTTTCCTTTGCTCATCGGATA
ATATATATCTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTA
AATTCGTTAGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGTAT
TCTAATCATCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAGAT
TGTAGACGATGATGGCTTTTATTTTGAGAGCCGTATCTTTCTGTCAAGAT
AGCGTTTAGTGGTTTTTGATGTGATTTTGATTTAGTTATTTAGATTATTT
ATTTAGAAAGTGGGTTATTTTTGGTTTCGttgaatttcaaagaattttct
cTGTAAATACTATTAAGAccaaaaagttaaattaaaagagTTTTTCCCAA
TTCATGTAATGAATTTgggatttttagaaatttattattttattgttatt
agatttttaagaacattaaaaaaatgagaatttcagattttgttacattt
tgttagattttgatattttttaaacataatttatttttttgattgtcAAT
GTGTGTCAAAAATTCTAATCACGagtttcaaacaaaaatgaagGACGAAT
CAAATATCAACACCgagaatattcaaaatttgcaaaGTCATTCAATCGAA
CCTTTAATTTGGAGATTTCGATTTCATACTTAATTGATgagtttctattt
ttttgtgTGTATTCTTTTCATTGGTCGATTTCAGTTTTAAACCGTTTATC
CCTAAACtgctttaatgggataaactttttgcggggattaaatttcgcag
atttcgcgaaaatccgcgaaattaagtcccaatggaaatttggaagggcc
tcttccgcgaaatatttctaaacaaaactcaaaatatgtcagataaatac
tatttgaatggttacttgcatcaaagaagcgccaataatgtgtatttcaa
caaccaacatgcatgatttgccAGTAAAAgccacaaaatcgtgaaaataa
tGGCACCCAATAGTGttacccgcgaaattaagtccccgcgaaatttttga
atttcgcggatcgACCTAGGCCCaaccacgaaatttaatccccgcgaaag
tttatcccattaaagtagtgaTTTTTGCAGTTTTTGTGCATTCCAATGAA
AAGCAATGGTTGATAGCGATACTCCcatcatttaaaaaatctttaatttc
gTTTTCATTAAGGATTTTAATTCAACCTACCGATGCATCTAATCCTTAAG
GGCTCTCTGACcatagtaaaaaaaataaaaaatatgaaaaatcgcTATGA
TCAAAGCCCTTAAGGTATATCATATCAGTTAGAAATTTTTACAGTCATTC
GAAAGaagtttatttttgttaaagtttttcgTTAAGTTGCATTTTgggat
ttcttttaaaaacaacattataaaaaatgatttaaaaaaatcgaaaccat
acattatttattcatttgttAAACCTTCGAGCACCCCgggtggggggggg
gcacaCTTGTAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012399-exon-sc0000144-1491911889:220635..221200 | TCONS_00012399-exon-sc0000144-1491911889:220635..221200 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1510915933:220635..221200 | TCONS_00012399-exon-sc0000144-1510915933:220635..221200 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1575043694:220635..221200 | TCONS_00012399-exon-sc0000144-1575043694:220635..221200 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1491911889:227208..227607 | TCONS_00012399-exon-sc0000144-1491911889:227208..227607 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1510915933:227208..227607 | TCONS_00012399-exon-sc0000144-1510915933:227208..227607 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1575043694:227208..227607 | TCONS_00012399-exon-sc0000144-1575043694:227208..227607 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1491911889:228490..228826 | TCONS_00012399-exon-sc0000144-1491911889:228490..228826 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1510915933:228490..228826 | TCONS_00012399-exon-sc0000144-1510915933:228490..228826 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1575043694:228490..228826 | TCONS_00012399-exon-sc0000144-1575043694:228490..228826 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1491911889:230255..232001 | TCONS_00012399-exon-sc0000144-1491911889:230255..232001 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1510915933:230255..232001 | TCONS_00012399-exon-sc0000144-1510915933:230255..232001 | Clytia hemisphaerica | exon |
| TCONS_00012399-exon-sc0000144-1575043694:230255..232001 | TCONS_00012399-exon-sc0000144-1575043694:230255..232001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:220635..232001 + |
Blast
BLAST of TCONS_00012399 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 9.093e-19 Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = 3
Query: 552 HDILLENQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 902
+ IL +QF+ NH KL ++W KAHY+E E + + L A+ ++RVR++ P PRTI +G + +++ G+L+ W + +PYPS EK++LA +GLT QV WF N R+R +
Sbjct: 67 YKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTI-WDGEETSYCFKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
|
