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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012395 ID=TCONS_00012395|Name=TCONS_00012395|organism=Clytia hemisphaerica|type=transcript|length=2995bp
CGAAGATTAAAGCAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGA
GGAAAAAGCCAGTAATACTGTGGAACATGTGCAACAGCTTTTACAACTTT
GGAGGCATTATACAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAAC
ATTGCAAACGATATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGC
CTTGTCTGTGTTTCTCAATGAACTTCCAAATACCGATGTTTATTGGACTG
AGGAATGTATTCTTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGAC
ACAGACACTGTGAAAAAGATTCTCAAGGTCAGTTTTCTTATtctattttg
tcatttttcgtGTAGATAGGGCCTTATACGcaacattcgaattttcttca
aaaacaaagtatgaaaaacgaaagtgaaagtcagAAGCGCTCGCTGTGCT
AAAGAACCACAATTCTCACACACATTTCACAGTTCAGGTCGAgtcaaacc
aaaacaaatcagcttaaaaaacaaaagacaagAAACATTGAATGGAGGAA
ACATGATATACTTTTGGTAATTATAATACTTTGTGATGAAAAATGATTGA
TCTCCTCGTGGTTTTATCTTTGTTGGACTAAACTTTACACACTTTTTACT
CatcaaaagttctttttttcttcaaatagaAACTTATTTTGTAAGACAGC
TTGTAAGTAGTCACACTTTTTTTAGTGAATTTTGAATAGTAGAGCATTTC
AtgccaaaaaaagttttatctAACTGTCTTATATATTTAGACAAAAATGC
TTTTTATTTGTACATCATAGGCAGGGCCTTGCCGTGTATGGTGGCACACA
CCTAAGATGGTTTGCAAGTGCTAAAATAACActcctaaaatatacaagaa
tgTACAAAATCCTTTTTGCAAGGGCTAATAGCACACCATAATCTATGACA
TATCTTTTATGGAGTGCTATATTGACACACGCAAGTTATTGTTCATGGCA
AGGCCTGATAAGTAGTGTAAGGTAGGTATAGAGgagtttcaatgttttga
ttttgtaaggACGGACTGATGTGGGCAGTTAGTCActctagcgtcccgcc
aaaatgcgtatcaatgctgcgaaagcgctatattgtttacctgactctca
agcaaaaaatgtgccgcaaaacttctaaagggattcatggaaaaataacc
cggcgcttttaaatgaaattaacgTTCTCAAAatctatgagaaattgcct
aaaatttgacccATAGATGTaataatttgagccaagccaaccttgagaac
taatttgaagatcaacttcccaagaaaaagatctatggAGGAGATGGAAc
ccaccgccggataggctatttcccggaaattttgccggacctcaaagaCT
GACCCATTttcatgtgcggaattatttttactttagcgttaAACTtagcc
ttaaaaatcgaagcgctgtctcgggaattgaacgacaaattttggttggt
tgattttggctgctgcacgttttattttgtttcaaactttcaagttttta
ttaattgtcttccgaacttgattcaggtaactctcatccttgttgttgca
aatacatcctgtagatgactgatgttgttttttctgaaagctagattcct
agtgtgactaactggtgGGCAGGCGATTGCGCTTGATTATTAGAGGCAAA
TCAGGTAAAAGACTTACAATTTATATGGAAGCAAGTgaatatcaatcaaa
tttttgacaaCTACCAGTCATATCtcttcaaaatttatgaatGGTAAGGC
TGTTTACCTCTGAGAAAACAtgctaaaatttcttttcaaaagtccTACCA
GAGActttgtcaaaacaaaaaatctgctTGCCTCCAGCTTATGGTCTTTT
TGCCTCCAAAAGATCTGGCCATAAGTCACATGAGTAAACAAATGGCGTAT
CACAAAAGCCGTCAATAGTAGCCAAAACACtgactgaaaattttttaaag
aagtaaCTGTTGGATGTTGCAACAGATAGTAAGGAGTTTTTGCCTAGTTA
GGAAAGTATTTTACATCCCTGATCTAGTCTAGACACCCTTCAAGTTGCAT
ATTATCTAAACTCCACTGACTACATCActaaaacaatgataagaaaatat
ttaatgCATCGTTGTGATGCTGGGGTTTTTAACCATTCAACATGCCATCA
TGTCCTGCAAAAAGTCTATTAAGCCTATCTatcctaggggggggggcttt
ttctGATCAGGGGTGAAACAATTGTTAATAGCTCCCGAAATAATAGAGGT
TTTGGGATGAAAATAAATGTGATGTGATGtaaatttctaacttttattta
gtttcaaaataaaaaaaattcgacACCTAAaacttttcacaccttgagca
tgatgacatttctgacagtaaggtgtcacaaaaattggcACATCtcaaat
acaaatttatttttcgtgtcaaatatattgtttaaaccgtaatttattgt
atatttaggataaaataagcttTTTAGAACtcagccaaatttcatccaaa
aagacccactagatcacaagttaaggggtggtacatgAAAAGCCCCctcc
ctagttctgaaccgcccctaaaagtctagtatgaatagggttaaagccaA
ACTATTGTCAGAATTTTGTATGAAATGAAGATGGTTAGATCTTTCAATTT
CTTGAgtgtttttgaagaaagaaataGTTAATTTTTCTAGAAATGTCAAC
AAACTAAAAATGCATCGTCACATTAAGGGAACCAAATTGTCTTCCCAAGt
ctatttttggacctaccccggtgggctgtaggtcctataaattaacctct
gttcgttcgtccgttcgttcgtccgttcgttactagcttttctcgggatt
ggtcattagtttttcctaatttttggcacaaagatgcaaaatggtaatgc
ccaaaatgtgacggagcccgattttcgaaaaaaattcatttccgg Run BLAST on NCBI transcript from alignment at sc0000144:220635..223629+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012395 ID=TCONS_00012395|Name=TCONS_00012395|organism=Clytia hemisphaerica|type=transcript|length=2995bp|location=Sequence derived from alignment at sc0000144:220635..223629+ (Clytia hemisphaerica)
CGAAGATTAAAGCAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGA
GGAAAAAGCCAGTAATACTGTGGAACATGTGCAACAGCTTTTACAACTTT
GGAGGCATTATACAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAAC
ATTGCAAACGATATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGC
CTTGTCTGTGTTTCTCAATGAACTTCCAAATACCGATGTTTATTGGACTG
AGGAATGTATTCTTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGAC
ACAGACACTGTGAAAAAGATTCTCAAGGTCAGTTTTCTTATtctattttg
tcatttttcgtGTAGATAGGGCCTTATACGcaacattcgaattttcttca
aaaacaaagtatgaaaaacgaaagtgaaagtcagAAGCGCTCGCTGTGCT
AAAGAACCACAATTCTCACACACATTTCACAGTTCAGGTCGAgtcaaacc
aaaacaaatcagcttaaaaaacaaaagacaagAAACATTGAATGGAGGAA
ACATGATATACTTTTGGTAATTATAATACTTTGTGATGAAAAATGATTGA
TCTCCTCGTGGTTTTATCTTTGTTGGACTAAACTTTACACACTTTTTACT
CatcaaaagttctttttttcttcaaatagaAACTTATTTTGTAAGACAGC
TTGTAAGTAGTCACACTTTTTTTAGTGAATTTTGAATAGTAGAGCATTTC
AtgccaaaaaaagttttatctAACTGTCTTATATATTTAGACAAAAATGC
TTTTTATTTGTACATCATAGGCAGGGCCTTGCCGTGTATGGTGGCACACA
CCTAAGATGGTTTGCAAGTGCTAAAATAACActcctaaaatatacaagaa
tgTACAAAATCCTTTTTGCAAGGGCTAATAGCACACCATAATCTATGACA
TATCTTTTATGGAGTGCTATATTGACACACGCAAGTTATTGTTCATGGCA
AGGCCTGATAAGTAGTGTAAGGTAGGTATAGAGgagtttcaatgttttga
ttttgtaaggACGGACTGATGTGGGCAGTTAGTCActctagcgtcccgcc
aaaatgcgtatcaatgctgcgaaagcgctatattgtttacctgactctca
agcaaaaaatgtgccgcaaaacttctaaagggattcatggaaaaataacc
cggcgcttttaaatgaaattaacgTTCTCAAAatctatgagaaattgcct
aaaatttgacccATAGATGTaataatttgagccaagccaaccttgagaac
taatttgaagatcaacttcccaagaaaaagatctatggAGGAGATGGAAc
ccaccgccggataggctatttcccggaaattttgccggacctcaaagaCT
GACCCATTttcatgtgcggaattatttttactttagcgttaAACTtagcc
ttaaaaatcgaagcgctgtctcgggaattgaacgacaaattttggttggt
tgattttggctgctgcacgttttattttgtttcaaactttcaagttttta
ttaattgtcttccgaacttgattcaggtaactctcatccttgttgttgca
aatacatcctgtagatgactgatgttgttttttctgaaagctagattcct
agtgtgactaactggtgGGCAGGCGATTGCGCTTGATTATTAGAGGCAAA
TCAGGTAAAAGACTTACAATTTATATGGAAGCAAGTgaatatcaatcaaa
tttttgacaaCTACCAGTCATATCtcttcaaaatttatgaatGGTAAGGC
TGTTTACCTCTGAGAAAACAtgctaaaatttcttttcaaaagtccTACCA
GAGActttgtcaaaacaaaaaatctgctTGCCTCCAGCTTATGGTCTTTT
TGCCTCCAAAAGATCTGGCCATAAGTCACATGAGTAAACAAATGGCGTAT
CACAAAAGCCGTCAATAGTAGCCAAAACACtgactgaaaattttttaaag
aagtaaCTGTTGGATGTTGCAACAGATAGTAAGGAGTTTTTGCCTAGTTA
GGAAAGTATTTTACATCCCTGATCTAGTCTAGACACCCTTCAAGTTGCAT
ATTATCTAAACTCCACTGACTACATCActaaaacaatgataagaaaatat
ttaatgCATCGTTGTGATGCTGGGGTTTTTAACCATTCAACATGCCATCA
TGTCCTGCAAAAAGTCTATTAAGCCTATCTatcctaggggggggggcttt
ttctGATCAGGGGTGAAACAATTGTTAATAGCTCCCGAAATAATAGAGGT
TTTGGGATGAAAATAAATGTGATGTGATGtaaatttctaacttttattta
gtttcaaaataaaaaaaattcgacACCTAAaacttttcacaccttgagca
tgatgacatttctgacagtaaggtgtcacaaaaattggcACATCtcaaat
acaaatttatttttcgtgtcaaatatattgtttaaaccgtaatttattgt
atatttaggataaaataagcttTTTAGAACtcagccaaatttcatccaaa
aagacccactagatcacaagttaaggggtggtacatgAAAAGCCCCctcc
ctagttctgaaccgcccctaaaagtctagtatgaatagggttaaagccaA
ACTATTGTCAGAATTTTGTATGAAATGAAGATGGTTAGATCTTTCAATTT
CTTGAgtgtttttgaagaaagaaataGTTAATTTTTCTAGAAATGTCAAC
AAACTAAAAATGCATCGTCACATTAAGGGAACCAAATTGTCTTCCCAAGt
ctatttttggacctaccccggtgggctgtaggtcctataaattaacctct
gttcgttcgtccgttcgttcgtccgttcgttactagcttttctcgggatt
ggtcattagtttttcctaatttttggcacaaagatgcaaaatggtaatgc
ccaaaatgtgacggagcccgattttcgaaaaaaattcatttccgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012395-exon-sc0000144-1491911889:220635..223629 | TCONS_00012395-exon-sc0000144-1491911889:220635..223629 | Clytia hemisphaerica | exon |
| TCONS_00012395-exon-sc0000144-1510915933:220635..223629 | TCONS_00012395-exon-sc0000144-1510915933:220635..223629 | Clytia hemisphaerica | exon |
| TCONS_00012395-exon-sc0000144-1575043694:220635..223629 | TCONS_00012395-exon-sc0000144-1575043694:220635..223629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:220635..223629 + |
Blast
The following BLAST results are available for this feature:
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