TCONS_00012329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012329
Unique NameTCONS_00012329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012329 ID=TCONS_00012329|Name=TCONS_00012329|organism=Clytia hemisphaerica|type=transcript|length=581bp
GATGTCGGAAACATACCGTATAAATACCCCTCcaagctttttcaagcaaa
attgccTGGTCAATCGTTGATTTTTACCATATATGGGCaaaacaaaaatc
taaatttttcgaGTTTCAGAAGGGTCTCGATAacaagtgaccccattttc
gaGCACTACTCATTGAGAGCTATCGAATGGTCGTACTACCAAAGAGCTaa
ctgaatttttattttttcgttccaaattcgatgacgtcatcagctatcac
gtgaaaattcttttttcaaaatttttttgaaatttattttggaaattcAT
ATAAAGGTTGATGGTGGAACAAAAAGTGTATAATGATCAACAAAGTGGTC
AAAAATGCCGCAAGTTGTATTAGGTTGCTGAGCGAGTGGGAGAAAAAAGG
TCATTTTTTGCCGCCGTGGTTGCCAGAAATGTCTGGAATTAGGTAAAAGT
TTGGAAATTTCTGGAAAGTCGGGAAAAAGTCTGGAATTGGCATAACAGTC
AggtaaaattctgaaaataatgTGGTTTTTGAGACTAAAAGTCTAGAATT
TCTCTAAAAACCTGTAGCAAACCCTTACaat
Run BLAST on NCBI

transcript from alignment at sc0000143:204364..204944

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012329 ID=TCONS_00012329|Name=TCONS_00012329|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0000143:204364..204944 (Clytia hemisphaerica)
attGTAAGGGTTTGCTACAGGTTTTTAGAGAAATTCTAGACTTTTAGTCT
CAAAAACCAcattattttcagaattttaccTGACTGTTATGCCAATTCCA
GACTTTTTCCCGACTTTCCAGAAATTTCCAAACTTTTACCTAATTCCAGA
CATTTCTGGCAACCACGGCGGCAAAAAATGACCTTTTTTCTCCCACTCGC
TCAGCAACCTAATACAACTTGCGGCATTTTTGACCACTTTGTTGATCATT
ATACACTTTTTGTTCCACCATCAACCTTTATATgaatttccaaaataaat
ttcaaaaaaattttgaaaaaagaattttcacgtgatagctgatgacgtca
tcgaatttggaacgaaaaaataaaaattcagttAGCTCTTTGGTAGTACG
ACCATTCGATAGCTCTCAATGAGTAGTGCtcgaaaatggggtcacttgtT
ATCGAGACCCTTCTGAAACtcgaaaaatttagatttttgttttGCCCATA
TATGGTAAAAATCAACGATTGACCAggcaattttgcttgaaaaagcttgG
AGGGGTATTTATACGGTATGTTTCCGACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006936XLOC_006936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012329-exon-sc0000143-1491911889:204364..204944TCONS_00012329-exon-sc0000143-1491911889:204364..204944Clytia hemisphaericaexon
TCONS_00012329-exon-sc0000143-1510915933:204364..204944TCONS_00012329-exon-sc0000143-1510915933:204364..204944Clytia hemisphaericaexon
TCONS_00012329-exon-sc0000143-1575043694:204364..204944TCONS_00012329-exon-sc0000143-1575043694:204364..204944Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:204364..204944 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.692544	0.557967	2.24761	2.60366	2.05779	0.730958	1.51002	1.69267	1.28109	1.36068	0.50902	0.812612	0.2798	0.232703	0.4756	0.100454	0.542392	0.733817	0.593149	0.513381	1.55716	1.31948	0.740921	0.994147	0	0	1.13454	0.989892	1.16439	1.17614
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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