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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012322 ID=TCONS_00012322|Name=TCONS_00012322|organism=Clytia hemisphaerica|type=transcript|length=936bp
CTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGCCACATACTTCA
GGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATAAAAGGATTGAA
GGCTATCGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATAAAAGG
ATTGAAGGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGGTCAAG
CAACCGACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGATTGTC
CAGGAAACAAATATGTTCAGCGAGAGTAAAGATGGTGCAACATCGGATAA
TATCCAGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCAGTTAG
CTAGTGTTGCAATCAACGAGGTTATTGGGTTCATCGACCAAAAACCATCA
GATTCTGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGGGAATC
TGATTCACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATGGGTTT
CTGAAGGAACGCTTGCTAAAGATGCAACATCAATTCTACTTGTTGGTCTA
GCTAAAGGGATTGTGGATTATGCAACCGTTGACCCGCAAAtattcatgta
tgaaataaggAAGTCAAACCCAAAAATGGTAGACGAAGACTACCATAAGA
AGATTACAGAATTAGAAGGGGATCTCAGGGTCACATCGATGCTGCCTATG
ATCAAGAAAATGTATACAAGTAGTAAGTTACTTTGGTTACTCTCAGGGTT
TCGTTATTTACATATTTCATcaagtaaatttttatttagcAAGACTCTGC
ctaagagggctaaaaagggttgaaaatctacaatccgccattatggaaat
ttgtgcctgatccaaataacgccacacacgttttctgactcttcaaggac
tatactttcatgatcaaaagaaaaaatgactatacg Run BLAST on NCBI protein sequence of TCONS_00012322-protein >TCONS_00012322-protein ID=TCONS_00012322-protein|Name=TCONS_00012322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MIVQETNMFSESKDGATSDNIQKALKSIFKGDWEQLASVAINEVIGFIDQ
KPSDSAEADIFSKSYLNWESDSLIQNTVYIQKAKWVSEGTLAKDATSILL
VGLAKGIVDYATVDPQIFMYEIRKSNPKMVDEDYHKKITELEGDLRVTSM
LPMIKKMYTSSKLLWLLSGFRYLHISSSKFLFSKTLPKRAKKG Run BLAST on NCBI transcript from alignment at sc0000143:575090..576529- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012322 ID=TCONS_00012322|Name=TCONS_00012322|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at sc0000143:575090..576529- (Clytia hemisphaerica)
CTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGCCACATACTTCA
GGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATAAAAGGATTGAA
GGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGGTCAAGCAACCG
ACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGATTGTCCAGGAA
ACAAATATGTTCAGCGAGAGTAAAGAGGGTGCAACATCGGATAATATCCA
GAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCAGTTAGCTAGTG
TTGCAATCAACGAGGTTATTGGGTTCATCAACCAAAAACCATCAGATTCT
GCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGGGAATCTGATTC
ACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATGGGTTTCTGAAG
GAACNCTTTAGCACAAATTTTGCTTAAGTTCATCTAGGGTCTTTTATGCG
CAAGATCAGGGCATCTTCTATACGCTACGTCAGTCCGGCTATTTACTACC
ACTTTTATTACTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGCC
ACATACTTCAGGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATAA
AAGGATTGAAGGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGGT
CAAGCAACCGACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGAT
TGTCCAGGAAACAAATATGTTCAGCGAGAGTAAAGATGGTGCAACATCGG
ATAATATCCAGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCAG
TTAGCTAGTGTTGCAATCAACGAGGTTATTGGGTTCATCGACCAAAAACC
ATCAGATTCTGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGGG
AATCTGATTCACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATGG
GTTTCTGAAGGAACGCTTGCTAAAGATGCAACATCAATTCTACTTGTTGG
TCTAGCTAAAGGGATTGTGGATTATGCAACCGTTGACCCGCAAATATTCA
TGTATGAAATAAGGAAGTCAAACCCAAAAATGGTAGACGAAGACTACCAT
AAGAAGATTACAGAATTAGAAGGGGATCTCAGGGTCACATCGATGCTGCC
TATGATCAAGAAAATGTATACAAGTAGTAAGTTACTTTGGTTACTCTCAG
GGTTTCGTTATTTACATATTTCATCAAGTAAATTTTTATTTAGCAAGACT
CTGCCTAAGAGGGCTAAAAAGGGTTGAAAATCTACAATCCGCCATTATGG
AAATTTGTGCCTGATCCAAATAACGCCACACACGTTTTCTGACTCTTCAA
GGACTATACTTTCATGATCAAAAGAAAAAATGACTATACG Coding sequence (CDS) from alignment at sc0000143:575090..576529- >TCONS_00012322 ID=TCONS_00012322|Name=TCONS_00012322|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000143:575090..576529- (Clytia hemisphaerica)
ATGATTGTCCAGGAAACAAATATGTTCAGCGAGAGTAAAGATGGTGCAAC
ATCGGATAATATCCAGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGG
AGCAGTTAGCTAGTGTTGCAATCAACGAGGTTATTGGGTTCATCGACCAA
AAACCATCAGATTCTGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAA
TTGGGAATCTGATTCACTTATTCAAAACACCGTTTACATCCAAAAAGCGA
AATGGGTTTCTGAAGGAACGCTTGCTAAAGATGCAACATCAATTCTACTT
GTTGGTCTAGCTAAAGGGATTGTGGATTATGCAACCGTTGACCCGCAAAT
ATTCATGTATGAAATAAGGAAGTCAAACCCAAAAATGGTAGACGAAGACT
ACCATAAGAAGATTACAGAATTAGAAGGGGATCTCAGGGTCACATCGATG
CTGCCTATGATCAAGAAAATGTATACAAGTAGTAAGTTACTTTGGTTACT
CTCAGGGTTTCGTTATTTACATATTTCATCAAGTAAATTTTTATTTAGCA
AGACTCTGCCTAAGAGGGCTAAAAAGGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012322-exon-sc0000143-1575043694:576423..576529 | TCONS_00012322-exon-sc0000143-1575043694:576423..576529 | Clytia hemisphaerica | exon |
| TCONS_00012322-exon-sc0000143-1575043694:575090..575918 | TCONS_00012322-exon-sc0000143-1575043694:575090..575918 | Clytia hemisphaerica | exon |
| TCONS_00012322-exon-sc0000143-1510915933:576423..576529 | TCONS_00012322-exon-sc0000143-1510915933:576423..576529 | Clytia hemisphaerica | exon |
| TCONS_00012322-exon-sc0000143-1510915933:575090..575918 | TCONS_00012322-exon-sc0000143-1510915933:575090..575918 | Clytia hemisphaerica | exon |
| TCONS_00012322-exon-sc0000143-1491911889:576423..576529 | TCONS_00012322-exon-sc0000143-1491911889:576423..576529 | Clytia hemisphaerica | exon |
| TCONS_00012322-exon-sc0000143-1491911889:575090..575918 | TCONS_00012322-exon-sc0000143-1491911889:575090..575918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:575090..576529 - |
Blast
The following BLAST results are available for this feature:
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