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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012305 ID=TCONS_00012305|Name=TCONS_00012305|organism=Clytia hemisphaerica|type=transcript|length=3515bpRun BLAST on NCBI protein sequence of TCONS_00012305-protein >TCONS_00012305-protein ID=TCONS_00012305-protein|Name=TCONS_00012305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=977bp MNGSHYNDVGSIFQQQTVAEIEGIERKIRGEIEKRKQDLRVMVGERYRDLRun BLAST on NCBI transcript from alignment at sc0000143:134181..166937- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012305 ID=TCONS_00012305|Name=TCONS_00012305|organism=Clytia hemisphaerica|type=transcript|length=32757bp|location=Sequence derived from alignment at sc0000143:134181..166937- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000143:134181..166937- >TCONS_00012305 ID=TCONS_00012305|Name=TCONS_00012305|organism=Clytia hemisphaerica|type=CDS|length=73350bp|location=Sequence derived from alignment at sc0000143:134181..166937- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012305 vs. Swiss-Prot (Human)
Match: COG1 (Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens GN=COG1 PE=1 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 5.730e-97 Identity = 263/942 (27.92%), Postives = 453/942 (48.09%), Query Frame = 3
Query: 177 QDLRVMVGERYRDLINAADTIQDMKKVTNEVTHNIEMISNLCANFXXX-XXXXXXXXXXXXXXXXXXAFYSLATQMDLLVDTPEKIWSALDEHKYLDAAQLYLLSHHIVNTSININTGQLKRGSQRDIFASFPILHHQWAAISHFKPSILKGGRNALKDATIPDLALTQSLCSIVLLEDYSPRQVFNEFLAARKNAFQDVFNANFHTTSSKKQISDLTHMLRLTIEQIVSLFYT-------DESKPEGSQKPLFYTTLQGIVNGKVSRKGKVFEDLFGDDMDVLTVSKFLPSTVSDFMPKLRSIPVTISISYIQKHTTDWLNTCTKEIHQGVKNLLSFINDIKGLALVRDAVYEILKDLPNAXXXXXXXXXXXXXXXXXLSWKQCCQISLNRHLSIWDEVFRPLFFQRAKEILERKCGDCFNDTSNMLHDILNDLKD--TNNPLSD-TSWDHDFTSFLWHEFPTSQDLMVDPTTTS-------NMSMLGLKVRNYTPSIQRLCNNFNNILKTIIQDAMHFLESDEDSKLDENELRLRAIKKDVQKMISTADEVFTEEASQPFNRFADAHQIRAALNTTFSKGVEKMCKQIGEILVETKNAXXXXXXXXXXXXXXXXNRATYLARLCLSLPDLCTNI-ETITNHQDSMATPQRT--PLKRQLSSHTRESLQRNAKKISSESLDKINAKFQQQHQTAADVWIDWTCKT-VGSLVRDTLRSSDDHFVFSVTHWDTVSIQXXXXXXXKIKSTIRVPSMPSFYLTSLLYRMVEELHRVGGSIFXXXXXXXXXVGIGDAILRSHKEYLNNMTQTKS------TXXXXXXXXXXXXXXXVKLLAGSSDLKDQETVQFRQGCTRLINALEQMVDPFDLDVFIPHIDKAVQKQLQRSSLIFGSIGQMDKHSLQGQHRVTSSTDQANVMPLVTNPPRFMLLPISTHKEQRKK 2918
++LR MVGERYRDLI AADTI M++ + ++ CA + + + ++ + S+E FYS+A Q+ LL++ PEKIWS+++ + L A QLY S+ R S + + FPIL Q AA SHF+ +IL + LK + D A+ ++LCSI+LLE+ SPRQ +FL ARK Q + N H K QI L +L T++Q +LFYT D + P G L ++TL+ I + KG + ++M + + K LP+++ +F P LR++ IS Y++ W++ C ++I G+ NLL ++ +KGLA +RDA++E+L + E SW C+ L + L W+++ + LF R + + + + + +L L +L+ +N+P + ++++ + FLW E P DL D S S L +K + +P +Q C+ ++ LK + D + +L SD+ S + KDV T+ S F+R+ADA ++ L T ++ + + I E ++ + V+ ++ L+ ++ARLC SL +LC ++ + I +S P R L++Q T+E + AK ++ QQ VW K + + L + + T WD + IQEE E G + S IR+P+ PS+Y+ S L+ + +E++RVGG + +L+ + ++ ++ E L+ Q K T + + L A ++K + + ++ + LE ++DPFDLDVF PH++ + + +QR+S++FG + + + L + +S + N++PL ++ RF LLP+S ++ K
Sbjct: 46 EELRQMVGERYRDLIEAADTIGQMRRCAVGLVDAVKATDQYCARLRQAGSAAPRPPRAQQPQQPSQEKFYSMAAQIKLLLEIPEKIWSSMEASQCLHATQLY--LLCCHLHSLLQLDSSSSRYS--PVLSRFPILIRQVAAASHFRSTILHESKMLLKCQGVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATIQKLLNQPHHGAGIKAQICSLVELLATTLKQAHALFYTLPEGLLPDPALPCG----LLFSTLETITGQHPAGKGT---GVLQEEMKLCSWFKHLPASIVEFQPTLRTLAHPISQEYLKDTLQKWIHMCNEDIKNGITNLLMYVKSMKGLAGIRDAMWELLTN-----------------ESTNHSWDVLCRRLLEKPLLFWEDMMQQLFLDRLQTLTKEGFDSISSSSKELLVSALQELESSTSNSPSNKHIHFEYNMSLFLWSESPN--DLPSDAAWVSVANRGQFASSGLSMKAQAISPCVQNFCSALDSKLKVKLDDLLAYLPSDDSS-----------LPKDVSP---------TQAKSSAFDRYADAGTVQEMLRTQSVACIKHI---VDCIRAELQSIEEGVQGQQDALNSAKLHSVLFMARLCQSLGELCPHLKQCILGKSESSEKPAREFRALRKQGKVKTQEIIPTQAK------WQEVKEVLLQQSVMGYQVWSSAVVKVLIHGFTQSLLLDDAGSVLATATSWDELEIQEEAESGSSVTSKIRLPAQPSWYVQSFLFSLCQEINRVGGHALPKVTLQEMLKSCMVQVVAAY-EKLSEEKQIKKEGAFPVTQNRALQLLYDLRYLNIVLTAKGDEVKSGRS-KPDSRIEKVTDHLEALIDPFDLDVFTPHLNSNLHRLVQRTSVLFGLVTGTE-NQLAPRSSTFNSQEPHNILPLASSQIRFGLLPLSMTSTRKAK 925 The following BLAST results are available for this feature:
BLAST of TCONS_00012305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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