TCONS_00012285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012285
Unique NameTCONS_00012285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012285 ID=TCONS_00012285|Name=TCONS_00012285|organism=Clytia hemisphaerica|type=transcript|length=1273bp
ATCCAATGCAACATTGTATATTGCAGAATGTTTGGGTCCGAAGATTGAGG
CTGTATTCAAGTGCGctgaaaagtttgaaatagtTGACAAAGTAAGATCT
CAATGGGCAAGATATCAGTTAGAAGATATACCTGAAGATACCTACACCAT
TTCTcagacaaaagaaaaacaaagtaaGTTTTATCGATTGGCTGATAAAT
TACTAATTGATTTCATGTGTTTTTTCAGATTGAAATATAACTCtttcttt
taaagttttgacttttttaagttgTAATGAAGTCATCTTGTCCTTATAAA
ACTTAGAATCTTCGCAAAAGAAGTATTGGGAGCACGCATACGAAGTTTGT
GGTCTTGAACCTGAAAAAGAACCCACTGTTAAATTCAAAAGAATTGATCA
TTATTGGAGATTTGTTGGTCAATTAACTGGTGACGATGGAAAACCAAAGT
ACCCTCACCTGTATGCTTTGGTCAAATGCATTTTATGTCTTTCCCATGGA
AACGCTATTCCTGAGAGAGGATTCTCCATTAATAAAAGAATAATAGAAGC
ACATGGTACAACAATTGGAGAGGACACAATTCAAGCCCATAGAATAGGTC
TGTCTTGAAAGATTGATAAATCTCATTGATCAATCTTAAGATCGCATTGT
CTCATTctcattcaaaatattttttatcgttattttgaaaaaaattttcg
aaggcTAAAAGTATCTCCAGGAATGTTACCAAAATGCTCTCATTTTTGGT
TTTATCGTGCTTGCTTTTTATACTTCCTTCTTAAACTTCTTCTTTTGTTT
AGTCAAGGATGCAATTGCTAGAGCTGGAGGTGTATTAAAGGTGCCAATTA
CCCGATCATTATTACAATCAGTCAAAGAAGCTCATGCCAGATCAGTTATT
GAACAACAGTTGAGAAAAGAGAAAGAAGAGATCTCAGAAAAGCAGAAGGC
TGAAAGAGAAAAGCTAAAAAGAAAGAATGCTGAAGCCGACACTGTCGACG
ATATGATCAGaatgtgTAAGGAAGACATAAAAACTGCTGAAAATGGAGAG
GAAGAGGCTAATAATGAGATCAGGGAGGCTATTATTAAGAAAGACATGAA
AGCTGTACAGACAGCACAAACAAAATTAACAATGGCAATTGAATCGAGAA
AACGATGGGTAGCTGATCTGGATAAACTGAAGgccaagaaaaagaaatag
ataTCAGTGTTATGTGCAAAGAGTTGTTGATATTTGTTATTATTTCGTTC
TACTTTTATCTACTTTAACCGAG
Run BLAST on NCBI

transcript from alignment at sc0000143:431939..433501+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012285 ID=TCONS_00012285|Name=TCONS_00012285|organism=Clytia hemisphaerica|type=transcript|length=1563bp|location=Sequence derived from alignment at sc0000143:431939..433501+ (Clytia hemisphaerica)
ATCCAATGCAACATTGTATATTGCAGAAGTAAGTATTGCATTACATTCTT
AGGAGCTTATAATGAGTTTCTAATTTAGTTTTCCAGGCATTTCCTGTGTT
AGTTGTGTTATCCTTCTACTCTGTGTTCTAACAGCCCAGCACATCTTTTG
ATCATAAATGTTTTTTGCAGTGTTTGGGTCCGAAGATTGAGGCTGTATTC
AAGTGCGctgaaaagtttgaaatagtTGACAAAGTAAGATCTCAATGGGC
AAGATATCAGTTAGAAGATATACCTGAAGATACCTACACCATTTCTcaga
caaaagaaaaacaaagtaaGTTTTATCGATTGGCTGATAAATTACTAATT
GATTTCATGTGTTTTTTCAGATTGAAATATAACTCtttcttttaaagttt
tgacttttttaagttgTAATGAAGTCATCTTGTCCTTATAAAACTTAGAA
TCTTCGCAAAAGAAGTATTGGGAGCACGCATACGAAGTTTGTGGTCTTGA
ACCTGAAAAAGAACCCACTGTTAAATTCAAAAGAATTGATCATTATTGGA
GATTTGTTGGTCAATTAACTGGTGACGATGGAAAACCAAAGTACCCTCAC
CTGTATGCTTTGGTCAAATGCATTTTATGTCTTTCCCATGGAAACGCTAT
TCCTGAGAGAGGATTCTCCATTAATAAAAGAATAATAGAAGCACATGGTA
CAACAATTGGAGAGGACACAATTCAAGCCCATAGAATAGGTCTGTCTTGA
AAGATTGATAAATCTCATTGATCAATCTTAAGATCGCATTGTCTCATTct
cattcaaaatattttttatcgttattttgaaaaaaattttcgaaggcTAA
AAGTATCTCCAGGAATGTTACCAAAATGCTCTCATTTTTGGTTTTATCGT
GCTTGCTTTTTATACTTCCTTCTTAAACTTCTTCTTTTGTTTAGTCAAGG
ATGCAATTGCTAGAGCTGGAGGTGTATTAAAGGTGCCAATTACCCGATCA
TTATTACAATCAGTCAAAGAAGCTCATGCCAGATCAGTTATTGAACAACA
GTTGAGAAAAGAGAAAGAAGAGATCTCAGAAAAGCAGAAGGCTGAAAGAG
AAAAGCTAAAAAGAAAGAATGCTGAAGCCGACACTGTCGACGATATGATC
AGGTGATAAGAATGCAAATTTTctgataaaaatgataaaataaaaagatt
ctCAGGCTCGGGCATTTGATTCACAATGATTATGTTCATTTCTTTTCAGT
TATTCTAAATAGTTTTatgtgaaaattaaaatttaactttttttttttag
aatgtgTAAGGAAGACATAAAAACTGCTGAAAATGGAGAGGAAGAGGCTA
ATAATGAGATCAGGGAGGCTATTATTAAGAAAGACATGAAAGCTGTACAG
ACAGCACAAACAAAATTAACAATGGCAATTGAATCGAGAAAACGATGGGT
AGCTGATCTGGATAAACTGAAGgccaagaaaaagaaatagataTCAGTGT
TATGTGCAAAGAGTTGTTGATATTTGTTATTATTTCGTTCTACTTTTATC
TACTTTAACCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006913XLOC_006913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012285-exon-sc0000143-1491911889:431939..431966TCONS_00012285-exon-sc0000143-1491911889:431939..431966Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1510915933:431939..431966TCONS_00012285-exon-sc0000143-1510915933:431939..431966Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1575043694:431939..431966TCONS_00012285-exon-sc0000143-1575043694:431939..431966Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1491911889:432109..433090TCONS_00012285-exon-sc0000143-1491911889:432109..433090Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1510915933:432109..433090TCONS_00012285-exon-sc0000143-1510915933:432109..433090Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1575043694:432109..433090TCONS_00012285-exon-sc0000143-1575043694:432109..433090Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1491911889:433239..433501TCONS_00012285-exon-sc0000143-1491911889:433239..433501Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1510915933:433239..433501TCONS_00012285-exon-sc0000143-1510915933:433239..433501Clytia hemisphaericaexon
TCONS_00012285-exon-sc0000143-1575043694:433239..433501TCONS_00012285-exon-sc0000143-1575043694:433239..433501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:431939..433501 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0260383	0.170185	0.136834	0	0.0783807	0.0824369	0	0.0222067	0	0.115149	0	0	0	0	0	0	0	0	0	0	0.429596	0.0168294	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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