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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012258 ID=TCONS_00012258|Name=TCONS_00012258|organism=Clytia hemisphaerica|type=transcript|length=626bp
GCCAAGATAAGATCCTGGGGAAGAAAAGAGAAAACACTTGAATGTACCAA
ATACCAAATTCGATTAAACATTTCAGGGTAACATATATCATAATAAAATC
TAACAAGCTTTTCTACTGGCGTATAAAACATTGTTCAGGAAATGGATACA
TAGGATATTTGGAAGATGTTGATTCCGTTGCTATTTATCATCATTTCATC
ACCTTCTACATCAGCCCTTAGTAGATCTTTATCATTGCCATTGATGATTG
ATCCGCTGCCAATTGCTTCAGCTCCATCGATAAATGTTGATCAAACTGAT
TATGGAGtGGCTGTCAATTATTTCCGAGATAGAGCAGATGATCAACTTTA
CTGTATCCGATTTGAAACATCTGCAATAGTGCCCGTAGACAGACCAATCG
ATTGCTGCAACGAAGAAGCATTCCTCTATTATCTAGACGAGGATGATACC
TTCTTTTCGACACCTGATCGTACACATTGTTTAAAGAAAAGTGGATTGAC
TTACTCTCTAGCTGGAATAGGTGGAAATTGTAATGCTCATTTATTAACAA
AGTGTATAAATACGACATCATTGCCGACAGTTGAATATTACAACCACGGA
GCCGGTAGAACATGTACTACTCGAAG Run BLAST on NCBI protein sequence of TCONS_00012258-protein >TCONS_00012258-protein ID=TCONS_00012258-protein|Name=TCONS_00012258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MLIPLLFIIISSPSTSALSRSLSLPLMIDPLPIASAPSINVDQTDYGVAV
NYFRDRADDQLYCIRFETSAIVPVDRPIDCCNEEAFLYYLDEDDTFFSTP
DRTHCLKKSGLTYSLAGIGGNCNAHLLTKCINTTSLPTVEYYNHGAGRTC
TTR Run BLAST on NCBI transcript from alignment at sc0000143:262641..267070+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012258 ID=TCONS_00012258|Name=TCONS_00012258|organism=Clytia hemisphaerica|type=transcript|length=4430bp|location=Sequence derived from alignment at sc0000143:262641..267070+ (Clytia hemisphaerica)
GCCAAGATAAGATCCTGGGGAAGAAAAGAGAAAACACTTGAATGTACCAA
ATACCAAATTCGATTAAACATTTCAGGGTAACATATATCATAATAAAATC
TAACAAGCTTTTCTACTGGCGTATAAAACATTGTTCAGGAAATGGATACA
TAGGATATTTGGAAGATGTTGATTCCGTTGCTATTTATCATCATTTCATC
ACCTTCTACATCAGCCCTTAGTAGATCTTTATCATTGCCATTGATGATTG
ATCCGCTGCCAATTGCTTCAGCTCCATCGATAAATGTTGATCAAACTGAT
TATGGAGGTATTGTGATTTCTTTTAGGGCTGTAATGTACaagcaatacac
cttttcgaccatagcTGCCAATTGCCGCGcgggtatttttttgtccgctt
tatcccactaaaaccgtctcagtccttttttcgcacctataaacaataga
aaaatgtgtcaaaaaaggactgtatcgagtttagggggataattaaataa
ttaggTGGCACGCGCCTGTCCGCACGTTACTACGGTTTAAAAGTTGTATA
ATTTTCAGGTAATCTTCTCAAGCCTCAGCTGACAAGAATTAAGCAGCTTC
GGTTAGCAACCCTAGACctagaaataaaaagaatcaaaccagcttttttg
aaattatttagaatcaaaacaacaaaaaggaTTTCAATACCGAGATATCA
GGTATTTTAGGTTTAACAGGgataaaatccaaaattttgaaagttgataa
ggcgagaccaatttgattagttattttatgggcccgaccgacccaaaaat
tccaaaaatcgaaatcgaaacaaaattgattttggttgtacatttttatt
ttcattgctttacagactgccaaattttcaaaatgttggttGTTTTTGAA
AGGTTTTGATAATTTCGTGTTCAATTATTTTCATTCTATCCATGAACTCG
agttttttgtgtctttttttccatttccaattcaagatgtagtagctttt
gctgcctttttaagagatattatagctgaaattctacttttattctTTCG
CCGACTGACTGACCCatttttttgggtagcttggccaatttttttgagcg
aaaaaatgaaaagttgaaagaagttcaacttttttaccATTACATCAGAT
TTtcccaatggaattgcttcatttttcaaccgaccaatgactttacaaaa
acgttaaaaagttttAGCTTATTTCGCGTGAAAGTTGAGACTAGCTTTTA
GACCCAAGTTCTGAACCCACCGTGTAACTTCAACACCACCATGTCAACTC
ATGATATGTGAGGGGAATCAAATAACATTACATTATTGAATTTTCGCCGG
GATTAAATATTGCTGTTGAGCTCATCTGCGAAATTCTAAGACTTTACAGG
AACTCAACTTCGCAGATGACATTATCaggagacaatattttcatgatttt
gtgtttttttttactgcCAAATTATACATACTTGAAATgcgcattattag
cgcttctttgatgccggttaacattttaaaaatagctatttgacattttc
gagctttttttcaaaaataagaactttccaaatttccattgggttcgcgg
atgacaccccaATCAGCCtaatccgcgaaattcaatcccTCTGAAAATTT
ATCCCGTTAAAGTAATAGTATGGTAATGAGACAGTACTACTGTAATGCAT
CGCAATCAAAGGATCTGGCGTTGACACTTTTTCTGCTATACTGTTGGCGA
GAGAGACAGATTACACCTACAAACGCCTTCTCATAACATTGTGAAACGAC
GTAAAAGAAAACTTTCGTTTGAAAAAATGGTTTTCTAAACCatgttttga
cttttcgtaTTCTTTAAGTTCAAAtgtgtcattttagagatttaaAAATG
GGTCAAAGTTAGTTTGAATACTGAACAAATACAATTTAAAATTTCCTCCA
TACTATTATACCCTTACagctacttgtttcaaataaatgcCCTCTTAGAG
GGGAGGCGTTTTTTTCGAAGAGGagtttatttgagggggggaagcccttt
ttacgccggccctcattggcgttatttttgggctcgtggcgtaataaggg
tcAGTGTTAAAAGGGAcagtgtaaaaagggccaagattttgcaattttta
actAAAAGCGGGGTTAATTGTTgaccattttttctcaatttaaaggattt
taggcatgATTAAAGGATAAAAACTATCCATTCTTTTTACTCTATATCCA
AAActtgatgaaaaaatgattttcaatggaattttcaacagtttgatact
gaaagatgacattttaatgtaaattttagttaatacttactgttttgaag
cctgaatagcgaattttttacaagtttacaagttttggcgttatttacgg
ccctaattggcgtaagcccaaaattaggctgtgacAGAAtcagggccggc
gtaaaaggggccagCGTTAAATTAGGGCTGGNAGTGACAGAATCAGGGct
ttaaattagggccggcgtaaaaagggccgataaggtaatacggtatactt
tttttcaaaaagaaaggtGTTATAAAAAAAGACGGCACAAAATTGCCTAA
AAGTGATAACAATTTAACAATAATACTGAGCATGGAAGTGCTGAATTTAA
AGCAATTTAAGCGTCAAATATATAGTGGTATAATTATTTTAGTTCAATAC
CTAATATTTGCAATGACGGATGCacctttttttactttttacagtGGCTG
TCAATTATTTCCGAGATAGAGCAGATGATCAACTTTACTGTATCCGATTT
GAAACATCTGCAATAGTGCCCGTAGACAGACCAATCGATTGCTGCAACGA
AGAAGCATTCCTCTATTATCTAGACGAGGATGATACCTTCTTTTCGACAC
CTGATCGTACACATTGTTTAAAGAAAAGTGGATTGACTTACTCTCTAGGT
AAGTTcgtgtccgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcagcT
TTTTTCGGGATTAGGTTAAACTTGAAGGCTGTTTCCTCATCAGACACATG
TCTTATATCAGACCTGTGTCTCCTATTATATTGTATTCTTTTCCTCTTGC
TAACCAATCTttctccacatctgtgtcaatttaatgtgaaaaaagttggt
aaattaaaattgatgagtaagtaaAATGATATCAttctacacccctgtgt
cacagacccgctagggcttcagccccactggaaaattgactttgatttta
tccccattcgaaaataattgtttagaaattacactccaaaaccatcctca
ctggattttttaaccttggaacaatagaatttttatccccattgagattt
caatcgaaatttttatcccagctgtaggaaaaagttttcattcttattca
aaaacaaaatcttcaaGACTATTTTGAGGTATTGTGATAATTAGTAACAA
CCACTTCCTTTATAGCTGGAATAGGTGGAAATTGTAATGCTCATTTATTA
ACAAAGTGTATAAATACGACATCATTGCCGACAGTTGAATATTACAACCA
CGGAGCCGGTAGAACATGTACTACTCGAAG Coding sequence (CDS) from alignment at sc0000143:262641..267070+ >TCONS_00012258 ID=TCONS_00012258|Name=TCONS_00012258|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0000143:262641..267070+ (Clytia hemisphaerica)
ATGTTGATTCCGTTGCTATTTATCATCATTTCATCACCTTCTACATCAGC
CCTTAGTAGATCTTTATCATTGCCATTGATGATTGATCCGCTGCCAATTG
CTTCAGCTCCATCGATAAATGTTGATCAAACTGATTATGGAGtGGCTGTC
AATTATTTCCGAGATAGAGCAGATGATCAACTTTACTGTATCCGATTTGA
AACATCTGCAATAGTGCCCGTAGACAGACCAATCGATTGCTGCAACGAAG
AAGCATTCCTCTATTATCTAGACGAGGATGATACCTTCTTTTCGACACCT
GATCGTACACATTGTTTAAAGAAAAGTGGATTGACTTACTCTCTAGCTGG
AATAGGTGGAAATTGTAATGCTCATTTATTAACAAAGTGTATAAATACGA
CATCATTGCCGACAGTTGAATATTACAACCACGGAGCCGGTAGAACATGT
ACTACTCGAATGTTGATTCCGTTGCTATTTATCATCATTTCATCACCTTC
TACATCAGCCCTTAGTAGATCTTTATCATTGCCATTGATGATTGATCCGC
TGCCAATTGCTTCAGCTCCATCGATAAATGTTGATCAAACTGATTATGGA
GtGGCTGTCAATTATTTCCGAGATAGAGCAGATGATCAACTTTACTGTAT
CCGATTTGAAACATCTGCAATAGTGCCCGTAGACAGACCAATCGATTGCT
GCAACGAAGAAGCATTCCTCTATTATCTAGACGAGGATGATACCTTCTTT
TCGACACCTGATCGTACACATTGTTTAAAGAAAAGTGGATTGACTTACTC
TCTAGCTGGAATAGGTGGAAATTGTAATGCTCATTTATTAACAAAGTGTA
TAAATACGACATCATTGCCGACAGTTGAATATTACAACCACGGAGCCGGT
AGAACATGTACTACTCGAATGTTGATTCCGTTGCTATTTATCATCATTTC
ATCACCTTCTACATCAGCCCTTAGTAGATCTTTATCATTGCCATTGATGA
TTGATCCGCTGCCAATTGCTTCAGCTCCATCGATAAATGTTGATCAAACT
GATTATGGAGtGGCTGTCAATTATTTCCGAGATAGAGCAGATGATCAACT
TTACTGTATCCGATTTGAAACATCTGCAATAGTGCCCGTAGACAGACCAA
TCGATTGCTGCAACGAAGAAGCATTCCTCTATTATCTAGACGAGGATGAT
ACCTTCTTTTCGACACCTGATCGTACACATTGTTTAAAGAAAAGTGGATT
GACTTACTCTCTAGCTGGAATAGGTGGAAATTGTAATGCTCATTTATTAA
CAAAGTGTATAAATACGACATCATTGCCGACAGTTGAATATTACAACCAC
GGAGCCGGTAGAACATGTACTACTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012258-exon-sc0000143-1491911889:262641..262947 | TCONS_00012258-exon-sc0000143-1491911889:262641..262947 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1510915933:262641..262947 | TCONS_00012258-exon-sc0000143-1510915933:262641..262947 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1575043694:262641..262947 | TCONS_00012258-exon-sc0000143-1575043694:262641..262947 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1491911889:265385..265588 | TCONS_00012258-exon-sc0000143-1491911889:265385..265588 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1510915933:265385..265588 | TCONS_00012258-exon-sc0000143-1510915933:265385..265588 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1575043694:265385..265588 | TCONS_00012258-exon-sc0000143-1575043694:265385..265588 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1491911889:266956..267070 | TCONS_00012258-exon-sc0000143-1491911889:266956..267070 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1510915933:266956..267070 | TCONS_00012258-exon-sc0000143-1510915933:266956..267070 | Clytia hemisphaerica | exon |
| TCONS_00012258-exon-sc0000143-1575043694:266956..267070 | TCONS_00012258-exon-sc0000143-1575043694:266956..267070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:262641..267070 + |
Blast
The following BLAST results are available for this feature:
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