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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012256 ID=TCONS_00012256|Name=TCONS_00012256|organism=Clytia hemisphaerica|type=transcript|length=3870bp
TGTCACAtaccatttttatttgagaattaacttcaaatcaatttctTTCT
AATATTTTTCTTACACAAAATTGCTTGGAATATATACAAAAATCTcaata
aaactaaaataaaaagttgtCATTTTTCTCAAACAACACATTCATCTTTG
CCTTGCTTTATGTCTTGGGTGTTCTTTACAAATGACGTGTAACCTTCCCC
TTCTCCAAACAAAACGACAAGCTGCACAACGTAACTTCAGTGATGATTTC
ACTTTATAAGTCCTCATATTGTTAAGAACTGCATAGGACAAACCATTGTG
GTATGTTTGTGCAACAAGTGATCGAAAGAATccaaacattttgattttta
ttattCAAGTGTTTTTCAAGTTTAGctgaaaaataacaaatttttgtgAA
TGCAAATCAAAGAAATAATTTTACAGTTCAATATTCCAATAAGCCCCTTT
ATAAAGGAGAaacttaaaaaacttaaaaactagGTTATAACGCTCATCGT
GTTAATTCATTTTGTCAAAGCCAAAAATCAAAGTATTTATACCTAAATTT
TTAAACACACTTTTTCAATTTGatcaaataaaatttccaacatTACTCAA
ACTTTCAAAGGGTTGAAAAGAAAGGACATTGAGTCTtagtcaaattttct
ttctaaaaaaacaTCCCTAATGCCATCCATTGTTAATCAGACTTCATCTT
CTTTTAATAACATATTAGGAATCCCTTTTGTGATGGGAAATTTTCGACCA
GTCTCTGGGCAAATAAGGTTGCCCTCCATGATCTCAATCTCTAACAAAAC
ATGATGCATCTCTTTCAGAAAGTCCTCATTTTCACAAAGTTCTGTTTCTT
TCCCTGTAATATCTAACGGTAAATTTGTTCCATGTCCGAGCGCTTGAGCA
GCTTCAACTAACGCTTTCCATTCCAATTTTTGCATCATTCTTTCCAGGAA
TTCCGGATTGTAGTCAGCTTCTTTAAGTTGAACATCCTCAGCCTCAATTT
TGAACGGAAATCCATCCTTGACACCTTTAATTTTACAGGCTAACATGTTA
TGAGTTATAAGCTTCATTgttggttttttattttttaccttaAACTTTTA
ATCAAATGAAAACCTGAATCAAACATAAAGAaaatacaaatgtcaaaaaa
tcatCTAATATTCTCACATCTATCTAAAATCAACCAGAGTTAGAACAGTT
GCTAGACTTGGGAGGCAAATTAAAGATAACTAATAATCAAgatattattt
ttaataaaGATGACAAGTTTGCTCTGAGGCTCATTTTGGTACCCGTGAAC
TCCCGGTCCCTTGGGGTTGATGTAACATCCAACCCACTAAGTTGTTTCCt
gtggaaaatttttctacaagGGTTCATAATATTTGTAGTAGGTGTTACTG
TCGTCCAGTCCTCAGATTAGGCAACAGTAAGGGAGTCAAGTGGTTGAGTT
TTCATACGCGTGTATTCTGTGAATAACGGCTATAAAGCAAATATAGAACA
CGAGTTTAAACAAACTATATACAAAGGTCTAGGTTAAAGTACAAGGAAGT
CGAGAAATATCGAGaaataagatataaaatatactTACTAAAAACACTTT
CCACGTACACTAACATACACTGACAGCAATATTAACACACTTTTTCAAGC
ACGGAAATTCACTGTACATTTAACAAGAAACATACAATAAACTGTCTCAA
GGGACTTACAAGACATTACAATACACAAGAGACATTATTATTCCTAAGAT
AATTACAAAGTACAAAGCTATTAGCAAACAATAAAGTATATAAACCTAAT
TAACTAGAAATAAGCACAAAGACTTTACAATAAATATAAACTGCAGCTCT
GCGAAGTTACAGTAGGGGGGAATTAGTCTCAGTTTTGGGTTTATAGGGGT
TTTACAACTTTATAAATGTTTTATGCATAGGATTTATTGTGCTTTATGCA
CGGTACAGATGCAGTCTAAAGGATGTGAATCTACAATCTTACTTTCACGC
TTCAGtatcagttaaaaaaagttGGGAAAGGAAGGCTGGAATAAATCTGT
TTTGGAATTTAATAAAGGTCTAGCATGATAAGACATAAGATATTTAAGAT
gttgtttttcgaaatttagtaCCTTTAGTATAAAAAAAACCACAGCACTA
TTCCCTAAACAAGAAGAAATCTAGAACATAAGAGTCCTTAAAAACCCtac
ttgaaattttatttaaagCTTCATCCTTGTTTGATATTGCACTTTTTATG
TCTTTTAGTAACGTTCATGTGTTCAGTTATTATTTAGTCATCCATGTCCT
GAAAACCCAAGACAATCACACTTCGTTTTTTACTTATAATAGAATTCTTT
AGCTGTGTTCTCCACTGTTTTTGACCAAAAGTTAAGAGATTGCttatatt
gtttgaaacatAAACGCTTTTCAACTTGTTCTGGGTGGAGAAGAAAGAAT
TTTGCCCTTCTCCATACTTCTCTATTGAGGTCATCTGCAAAGNAAACATA
AACGCTTTTCAACTTGTTCTGGGTGGAGAAGAAAGAATTTTGCCCTTCTC
CATACTTCTCTATCAAGGTCATCTGCAAAGATTTCACATCTCTCATTGGA
AGTTTGAAGCTTGTGTGAAGTGACAGATAaagtttcataattttttgaAC
GACCATAGAAATCAAATCTTTCGAAATTCTTCTTCATCAGAAAAAGCTTT
TCATTGCcaatagaaaaatatttcacttcCCCAACTCTTATTGAAGAAAT
TACCCTTTTGTACCATTTTGAGTAGGAGGTACTTAATTCTAAATGAGAAT
GAATCAGATTCTCGACTCCCCAAATGACAACATCATCAGTTGACTTGAAG
GTGGGTTGTTTCGTTGTTTCAGTTTTTGATCCAACTAAATCTGTTTGTTC
TTTCAACTTTGCTATTGCTGAGGCATGTTCTGCTAGCTTGGAGTTTGTCT
CAAATTTATAATGACACAACTCattgttaaatttttcttttaactgTTTC
TCCATTTCTTCTACTATTTTCCCCACAACATCATCACTTTGCacagattt
ttccaattttgattGAGATCCTGGTTCTTCAGCATTCTTTCTTACTTTTT
CTATTTCAATCTCATGCTTCAGCCTTTCAATTTCTCTCTCAAGCTCCAAA
AGTTGCATTTTATGTTCCAGCTTCAAGATCTTTATTTCTTTCTCAGTGGT
CTTCTTTCTGTATGAGATTTTCAGCTTTCAGTTTTTGTATTTCATCCATG
TTGACTGAAATGTGCCCTTCAGCACTGTGTGCATTGGCCATTTAACTAAT
ATATGTCTGATGTGCCAATGTGATGAGCTAAGTTAACTAATACatttatt
gaaaatatattcttttCGTCTTTTTATctggaaatttagaaatacgacaA
AAAGAgagtcaaatttaaaatttgtttcctatctagggCGACATCAATTA
TATGTTCTGTTCCCATCGCCAGACCGACTCACCTTCAAAACAGTGTCTAA
TTTTCTGTCTCTACTATCTGTCGCAGTGTCGGAGGACCCAATTTCTGTAT
AAATTtggtctaaattttcgccaaattccgccactctgTCCGGAAAAAGA
GTCCATTCCGCTCCTCCGctaaccatgaaaccccccatCAATGGCAAAAA
GATCTATTCCATTTTAGTCgctttctcaaagaaaatggctctttaaaaga
ttttctatagCTATATAGAAAAACACAACTGAAAATGGTATAACATAATC
AGAAAAATACACGAACTGTCAACGCAGTCAGCTTCGTTAATTTAGTTTGC
ATGTATCTACTTGCATCCATGTCCATGAATCATGAATACCTAGTCGTTTT
GATTGATGGTGGGTCTATAA Run BLAST on NCBI transcript from alignment at sc0000143:167209..171519+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012256 ID=TCONS_00012256|Name=TCONS_00012256|organism=Clytia hemisphaerica|type=transcript|length=4311bp|location=Sequence derived from alignment at sc0000143:167209..171519+ (Clytia hemisphaerica)
TGTCACAtaccatttttatttgagaattaacttcaaatcaatttctTTCT
AATATTTTTCTTACACAAAATTGCTTGGAATATATACAAAAATCTcaata
aaactaaaataaaaagttgtCATTTTTCTCAAACAACACATTCATCTTTG
CCTTGCTTTATGTCTTGGGTGTTCTTTACAAATGACGTGTAACCTTCCCC
TTCTCCAAACAAAACGACAAGCTGCACAACGTAACTTCAGTGATGATTTC
ACTTTATAAGTCCTCATATTGTTAAGAACTGCATAGGACAAACCATTGTG
GTATGTTTGTGCAACAAGTGATCGAAAGAATccaaacattttgattttta
ttattCAAGTGTTTTTCAAGTTTAGctgaaaaataacaaatttttgtgAA
TGCAAATCAAAGAAATAATTTTACAGTTCAATATTCCAATAAGCCCCTTT
ATAAAGGAGAaacttaaaaaacttaaaaactagGTTATAACGCTCATCGT
GTTAATTCATTTTGTCAAAGCCAAAAATCAAAGTATTTATACCTAAATTT
TTAAACACACTTTTTCAATTTGatcaaataaaatttccaacatTACTCAA
ACTTTCAAAGGGTTGAAAAGAAAGGACATTGAGTCTtagtcaaattttct
ttctaaaaaaacaTCCCTAATGCCATCCATTGTTAATCAGACTTCATCTT
CTTTTAATAACATATTAGGAATCCCTTTTGTGATGGGAAATTTTCGACCA
GTCTCTGGGCAAATAAGGTTGCCCTCCATGATCTCAATCTCTAACAAAAC
ATGATGCATCTCTTTCAGAAAGTCCTCATTTTCACAAAGTTCTGTTTCTT
TCCCTGTAATATCTAACGGTAAATTTGTTCCATGTCCGAGCGCTTGAGCA
GCTTCAACTAACGCTTTCCATTCCAATTTTTGCATCATTCTTTCCAGGAA
TTCCGGATTGTAGTCAGCTTCTTTAAGTTGAACATCCTCAGCCTCAATTT
TGAACGGAAATCCATCCTTGACACCTTTAATTTTACAGGCTAACATGTTA
TGAGTTATAAGCTTCATTgttggttttttattttttaccttaAACTTTTA
ATCAAATGAAAACCTGAATCAAACATAAAGAaaatacaaatgtcaaaaaa
tcatCTAATATTCTCACATCTATCTAAAATCAACCAGAGTTAGAACAGTT
GCTAGACTTGGGAGGCAAATTAAAGATAACTAATAATCAAgatattattt
ttaataaaGATGACAAGTTTGCTCTGAGGCTCATTTTGGTACCCGTGAAC
TCCCGGTCCCTTGGGGTTGATGTAACATCCAACCCAATAAGGGTGCATAC
CATTtagccaaaaacccaaaaaagtgaaacagaggGTTTAGCGAACGCAT
TGATTCATTTAAAGGTTTACCTAAACAGACGATCAAAGCCAACAGtcttt
tttgtgtgttttctTTGTTCGCTAAACCGAGGGTTTAGCAAACAAACTGc
accatttgattttttgttttgctaaacCATTATTCTAACCAAGCACTACA
CTTTGTTTACGCTGGTTCGCTAAGCGCACGCATGCATAAGCCCTAAGACT
GAAGGTTTCTTCAGctgggctaccattttgaaattcgttGCTGTGACTTC
AGGCAAGATCATAGAAATCGAATTAGCAATGTAACAGCTTCTTTGTTtag
gtaaacaaacccaaaccatttgcagtttagtgaaacagtttcagtttttt
ggttttgaacattaaaaggTATGCAACCTAAGTTGTTTCCtgtggaaaat
ttttctacaagGGTTCATAATATTTGTAGTAGGTGTTACTGTCGTCCAGT
CCTCAGATTAGGCAACAGTAAGGGAGTCAAGTGGTTGAGTTTTCATACGC
GTGTATTCTGTGAATAACGGCTATAAAGCAAATATAGAACACGAGTTTAA
ACAAACTATATACAAAGGTCTAGGTTAAAGTACAAGGAAGTCGAGAAATA
TCGAGaaataagatataaaatatactTACTAAAAACACTTTCCACGTACA
CTAACATACACTGACAGCAATATTAACACACTTTTTCAAGCACGGAAATT
CACTGTACATTTAACAAGAAACATACAATAAACTGTCTCAAGGGACTTAC
AAGACATTACAATACACAAGAGACATTATTATTCCTAAGATAATTACAAA
GTACAAAGCTATTAGCAAACAATAAAGTATATAAACCTAATTAACTAGAA
ATAAGCACAAAGACTTTACAATAAATATAAACTGCAGCTCTGCGAAGTTA
CAGTAGGGGGGAATTAGTCTCAGTTTTGGGTTTATAGGGGTTTTACAACT
TTATAAATGTTTTATGCATAGGATTTATTGTGCTTTATGCACGGTACAGA
TGCAGTCTAAAGGATGTGAATCTACAATCTTACTTTCACGCTTCAGtatc
agttaaaaaaagttGGGAAAGGAAGGCTGGAATAAATCTGTTTTGGAATT
TAATAAAGGTCTAGCATGATAAGACATAAGATATTTAAGATgttgttttt
cgaaatttagtaCCTTTAGTATAAAAAAAACCACAGCACTATTCCCTAAA
CAAGAAGAAATCTAGAACATAAGAGTCCTTAAAAACCCtacttgaaattt
tatttaaagCTTCATCCTTGTTTGATATTGCACTTTTTATGTCTTTTAGT
AACGTTCATGTGTTCAGTTATTATTTAGTCATCCATGTCCTGAAAACCCA
AGACAATCACACTTCGTTTTTTACTTATAATAGAATTCTTTAGCTGTGTT
CTCCACTGTTTTTGACCAAAAGTTAAGAGATTGCttatattgtttgaaac
atAAACGCTTTTCAACTTGTTCTGGGTGGAGAAGAAAGAATTTTGCCCTT
CTCCATACTTCTCTATTGAGGTCATCTGCAAAGNAAACATAAACGCTTTT
CAACTTGTTCTGGGTGGAGAAGAAAGAATTTTGCCCTTCTCCATACTTCT
CTATCAAGGTCATCTGCAAAGATTTCACATCTCTCATTGGAAGTTTGAAG
CTTGTGTGAAGTGACAGATAaagtttcataattttttgaACGACCATAGA
AATCAAATCTTTCGAAATTCTTCTTCATCAGAAAAAGCTTTTCATTGCca
atagaaaaatatttcacttcCCCAACTCTTATTGAAGAAATTACCCTTTT
GTACCATTTTGAGTAGGAGGTACTTAATTCTAAATGAGAATGAATCAGAT
TCTCGACTCCCCAAATGACAACATCATCAGTTGACTTGAAGGTGGGTTGT
TTCGTTGTTTCAGTTTTTGATCCAACTAAATCTGTTTGTTCTTTCAACTT
TGCTATTGCTGAGGCATGTTCTGCTAGCTTGGAGTTTGTCTCAAATTTAT
AATGACACAACTCattgttaaatttttcttttaactgTTTCTCCATTTCT
TCTACTATTTTCCCCACAACATCATCACTTTGCacagatttttccaattt
tgattGAGATCCTGGTTCTTCAGCATTCTTTCTTACTTTTTCTATTTCAA
TCTCATGCTTCAGCCTTTCAATTTCTCTCTCAAGCTCCAAAAGTTGCATT
TTATGTTCCAGCTTCAAGATCTTTATTTCTTTCTCAGTGGTCTTCTTTCT
GTATGAGATTTTCAGCTTTCAGTTTTTGTATTTCATCCATGTTGACTGAA
ATGTGCCCTTCAGCACTGTGTGCATTGGCCATTTAACTAATATATGTCTG
ATGTGCCAATGTGATGAGCTAAGTTAACTAATACatttattgaaaatata
ttcttttCGTCTTTTTATctggaaatttagaaatacgacaAAAAGAgagt
caaatttaaaatttgtttcctatctagggCGACATCAATTATATGTTCTG
TTCCCATCGCCAGACCGACTCACCTTCAAAACAGTGTCTAATTTTCTGTC
TCTACTATCTGTCGCAGTGTCGGAGGACCCAATTTCTGTATAAATTtggt
ctaaattttcgccaaattccgccactctgTCCGGAAAAAGAGTCCATTCC
GCTCCTCCGctaaccatgaaaccccccatCAATGGCAAAAAGATCTATTC
CATTTTAGTCgctttctcaaagaaaatggctctttaaaagattttctata
gCTATATAGAAAAACACAACTGAAAATGGTATAACATAATCAGAAAAATA
CACGAACTGTCAACGCAGTCAGCTTCGTTAATTTAGTTTGCATGTATCTA
CTTGCATCCATGTCCATGAATCATGAATACCTAGTCGTTTTGATTGATGG
TGGGTCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012256-exon-sc0000143-1491911889:167209..168544 | TCONS_00012256-exon-sc0000143-1491911889:167209..168544 | Clytia hemisphaerica | exon |
| TCONS_00012256-exon-sc0000143-1510915933:167209..168544 | TCONS_00012256-exon-sc0000143-1510915933:167209..168544 | Clytia hemisphaerica | exon |
| TCONS_00012256-exon-sc0000143-1575043694:167209..168544 | TCONS_00012256-exon-sc0000143-1575043694:167209..168544 | Clytia hemisphaerica | exon |
| TCONS_00012256-exon-sc0000143-1491911889:168986..171519 | TCONS_00012256-exon-sc0000143-1491911889:168986..171519 | Clytia hemisphaerica | exon |
| TCONS_00012256-exon-sc0000143-1510915933:168986..171519 | TCONS_00012256-exon-sc0000143-1510915933:168986..171519 | Clytia hemisphaerica | exon |
| TCONS_00012256-exon-sc0000143-1575043694:168986..171519 | TCONS_00012256-exon-sc0000143-1575043694:168986..171519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:167209..171519 + |
Blast
BLAST of TCONS_00012256 vs. Swiss-Prot (Human)
Match: TR112 (Multifunctional methyltransferase subunit TRM112-like protein OS=Homo sapiens GN=TRMT112 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.806e-31 Identity = 61/126 (48.41%), Postives = 89/126 (70.63%), Query Frame = -2
Query: 693 MKLITHNMLACKIKGVKD-GFPFKIEAEDVQLKEADYNPEFLERMMQKLEWKALVEAAQALGHGTNLPLDITGKETELCENEDFLKEMHHVLLEIEIMEGNLICPETGRKFPITKGIPNMLLKEDE 1067
MKL+THN+L+ ++GV GFP +++A +V++ ++NP F+ RM+ K+EW A +EAA L + G E ENE+FL+ MHH+LLE+E++EG L CPE+GR FPI++GIPNMLL E+E
Sbjct: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNLRLIQVPKGPVEGYE----ENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSEEE 122
The following BLAST results are available for this feature:
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