|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012238 ID=TCONS_00012238|Name=TCONS_00012238|organism=Clytia hemisphaerica|type=transcript|length=1118bp
CCCGTACCTGTTCGAAAAATTCTCCGCTGGTCAACATGCAGTGAGAATAT
CAAACCGCTACTGGGCTGGCTTGTGGTCTGACCTAGTTATTGAACAAACG
CTTGTGCGGTCTGCTAAAAGTCGAGGTGGGCTTACGCGAGGACAAGGAAT
GGAGGAGAATGTTCGTCAACTCTGGATTTCGAGTATGAGCTATTGTGCAG
CTGTCCATGATTCTATGACAACTTTGACCGGGGTGAAAGTAATAAGTAGC
GATCAACATCAAGAGATGGGGTTTTCCCGGATCAAAACTGACAATGAACA
ATGAAGTTCTTCTGTTGGGTGGAGAAAAGGAACCCTTTCATCTTCAAAGA
TCAGCACCTACATTCGCTTTCATCAGGCGTTGTATCAATGAAAAACAAAG
ACAACGTGAACTGCGAAGAGGCCGAGAAAGTTGGTAAGAAGTTCCAGGAA
ACTATCGATGAAAAGGCCTTCACGGACGCCAAACTTAAACGGAAAGACGA
AGTGAAATCACTAGCAGTTATTCAAAATACGATAATTGTCGATGATGAAC
CAATAGCAGTTGACTCGACAAGCCTCTTCACTCGCCTGGCGGCTGTTGCT
CAAAGAGAAGAAAACGTGGAAAAGTATTTTGAGTACGAGCTGACACAGTT
TCCGGAAAGTCTCTTTAAAAGAGGATTGATGAGAAAACCTGACAAAGCAT
CACTGAGAAAGCTAATTTTACCAGAACAGAAATCTTGTGATCGTTTGTCA
AGTGGCCAGTTTGTTCTTGATGGTGGTGCTCTGATACATATAGAGTCAGT
TGGAAGAAAGGCATCACATTCATGGAAATAGCCTCATATCATGTCAGCTA
TGTGAGAGCCAACTATGGTACGTGTCGTGTCGTTTTCGATGGCTACAATG
ACCCCACTTGGATAAAATCCAATGAGCACGAACGGAGGAAGAAATCACAT
GGGTCCTGTCCTGACGTTGACATTTTGGAAGATAACGAATCAAAATACAA
CCGGGAACGCAGTAGCGCTGATTGCCGAGTATCTAACTCGTGATGGCCAA
AGCGTCCATATTTGTGAAGGTGATGTTGACACCAAGATCGTATCCACATC
CTCGGAACTGGCAAAACA Run BLAST on NCBI protein sequence of TCONS_00012238-protein >TCONS_00012238-protein ID=TCONS_00012238-protein|Name=TCONS_00012238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MKFFCWVEKRNPFIFKDQHLHSLSSGVVSMKNKDNVNCEEAEKVGKKFQE
TIDEKAFTDAKLKRKDEVKSLAVIQNTIIVDDEPIAVDSTSLFTRLAAVA
QREENVEKYFEYELTQFPESLFKRGLMRKPDKASLRKLILPEQKSCDRLS
SGQFVLDGGALIHIESVGRKASHSWK Run BLAST on NCBI transcript from alignment at sc0000141:447104..448221 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012238 ID=TCONS_00012238|Name=TCONS_00012238|organism=Clytia hemisphaerica|type=transcript|length=1118bp|location=Sequence derived from alignment at sc0000141:447104..448221 (Clytia hemisphaerica)
TGTTTTGCCAGTTCCGAGGATGTGGATACGATCTTGGTGTCAACATCACC
TTCACAAATATGGACGCTTTGGCCATCACGAGTTAGATACTCGGCAATCA
GCGCTACTGCGTTCCCGGTTGTATTTTGATTCGTTATCTTCCAAAATGTC
AACGTCAGGACAGGACCCATGTGATTTCTTCCTCCGTTCGTGCTCATTGG
ATTTTATCCAAGTGGGGTCATTGTAGCCATCGAAAACGACACGACACGTA
CCATAGTTGGCTCTCACATAGCTGACATGATATGAGGCTATTTCCATGAA
TGTGATGCCTTTCTTCCAACTGACTCTATATGTATCAGAGCACCACCATC
AAGAACAAACTGGCCACTTGACAAACGATCACAAGATTTCTGTTCTGGTA
AAATTAGCTTTCTCAGTGATGCTTTGTCAGGTTTTCTCATCAATCCTCTT
TTAAAGAGACTTTCCGGAAACTGTGTCAGCTCGTACTCAAAATACTTTTC
CACGTTTTCTTCTCTTTGAGCAACAGCCGCCAGGCGAGTGAAGAGGCTTG
TCGAGTCAACTGCTATTGGTTCATCATCGACAATTATCGTATTTTGAATA
ACTGCTAGTGATTTCACTTCGTCTTTCCGTTTAAGTTTGGCGTCCGTGAA
GGCCTTTTCATCGATAGTTTCCTGGAACTTCTTACCAACTTTCTCGGCCT
CTTCGCAGTTCACGTTGTCTTTGTTTTTCATTGATACAACGCCTGATGAA
AGCGAATGTAGGTGCTGATCTTTGAAGATGAAAGGGTTCCTTTTCTCCAC
CCAACAGAAGAACTTCATTGTTCATTGTCAGTTTTGATCCGGGAAAACCC
CATCTCTTGATGTTGATCGCTACTTATTACTTTCACCCCGGTCAAAGTTG
TCATAGAATCATGGACAGCTGCACAATAGCTCATACTCGAAATCCAGAGT
TGACGAACATTCTCCTCCATTCCTTGTCCTCGCGTAAGCCCACCTCGACT
TTTAGCAGACCGCACAAGCGTTTGTTCAATAACTAGGTCAGACCACAAGC
CAGCCCAGTAGCGGTTTGATATTCTCACTGCATGTTGACCAGCGGAGAAT
TTTTCGAACAGGTACGGG Coding sequence (CDS) from alignment at sc0000141:447104..448221 >TCONS_00012238 ID=TCONS_00012238|Name=TCONS_00012238|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at sc0000141:447104..448221 (Clytia hemisphaerica)
CTATTTCCATGAATGTGATGCCTTTCTTCCAACTGACTCTATATGTATCA
GAGCACCACCATCAAGAACAAACTGGCCACTTGACAAACGATCACAAGAT
TTCTGTTCTGGTAAAATTAGCTTTCTCAGTGATGCTTTGTCAGGTTTTCT
CATCAATCCTCTTTTAAAGAGACTTTCCGGAAACTGTGTCAGCTCGTACT
CAAAATACTTTTCCACGTTTTCTTCTCTTTGAGCAACAGCCGCCAGGCGA
GTGAAGAGGCTTGTCGAGTCAACTGCTATTGGTTCATCATCGACAATTAT
CGTATTTTGAATAACTGCTAGTGATTTCACTTCGTCTTTCCGTTTAAGTT
TGGCGTCCGTGAAGGCCTTTTCATCGATAGTTTCCTGGAACTTCTTACCA
ACTTTCTCGGCCTCTTCGCAGTTCACGTTGTCTTTGTTTTTCATTGATAC
AACGCCTGATGAAAGCGAATGTAGGTGCTGATCTTTGAAGATGAAAGGGT
TCCTTTTCTCCACCCAACAGAAGAACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012238-exon-sc0000141-1491911889:447104..448221 | TCONS_00012238-exon-sc0000141-1491911889:447104..448221 | Clytia hemisphaerica | exon |
| TCONS_00012238-exon-sc0000141-1510915933:447104..448221 | TCONS_00012238-exon-sc0000141-1510915933:447104..448221 | Clytia hemisphaerica | exon |
| TCONS_00012238-exon-sc0000141-1575043694:447104..448221 | TCONS_00012238-exon-sc0000141-1575043694:447104..448221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:447104..448221 . |
Blast
The following BLAST results are available for this feature:
|
