TCONS_00012225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012225
Unique NameTCONS_00012225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012225 ID=TCONS_00012225|Name=TCONS_00012225|organism=Clytia hemisphaerica|type=transcript|length=398bp
GAATTATCGGATTTTCGATGCCCACTGTATTATGTATAGCACCAGATGAT
TCTCTGGTCCTTCAGTAACATATATAAAGCTTGGGATACAACATGGAGGC
GAGGTTGGGTCTTTGCTTGAGGGTTAAATTGATGTAACCTGCATTAGagt
aaattctttatttttcgagagaatgaaaatttcgattttgattGCGGAGA
ATGAACATAATCTGGTCACGTTGGCCAAAATCGCATCAGCGTTGTACCTG
AGAAGCAAAGGATCCTTCTAGAAGTGTATCACAAAAACCCCattcacttt
tttgatttttaaagagtGTTCAAAATGTCATAAGTTTCTCGattctttat
atttttaaagaactttttccCCTTGAATCTTAAAAATTGTCTCCTTGC
Run BLAST on NCBI

transcript from alignment at sc0000141:65430..65827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012225 ID=TCONS_00012225|Name=TCONS_00012225|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at sc0000141:65430..65827 (Clytia hemisphaerica)
GCAAGGAGACAATTTTTAAGATTCAAGGggaaaaagttctttaaaaatat
aaagaatCGAGAAACTTATGACATTTTGAACactctttaaaaatcaaaaa
agtgaatGGGGTTTTTGTGATACACTTCTAGAAGGATCCTTTGCTTCTCA
GGTACAACGCTGATGCGATTTTGGCCAACGTGACCAGATTATGTTCATTC
TCCGCaatcaaaatcgaaattttcattctctcgaaaaataaagaatttac
tCTAATGCAGGTTACATCAATTTAACCCTCAAGCAAAGACCCAACCTCGC
CTCCATGTTGTATCCCAAGCTTTATATATGTTACTGAAGGACCAGAGAAT
CATCTGGTGCTATACATAATACAGTGGGCATCGAAAATCCGATAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006878XLOC_006878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012225-exon-sc0000141-1491911889:65430..65827TCONS_00012225-exon-sc0000141-1491911889:65430..65827Clytia hemisphaericaexon
TCONS_00012225-exon-sc0000141-1510915933:65430..65827TCONS_00012225-exon-sc0000141-1510915933:65430..65827Clytia hemisphaericaexon
TCONS_00012225-exon-sc0000141-1575043694:65430..65827TCONS_00012225-exon-sc0000141-1575043694:65430..65827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:65430..65827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	29.8707	19.8035	15.9281	20.56	9.17456	7.44549	3.80357	8.00101	0.249684	0.259299	0.213179	0.114387	0.422746	0	1.3968	1.67046	0.181492	0.531151	0.215228	0.391347	1.0077	1.79869	0.772175	0	0.208347	0.849089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top