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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012223 ID=TCONS_00012223|Name=TCONS_00012223|organism=Clytia hemisphaerica|type=transcript|length=1325bp
CTGAAAATGAGCATTGTAATATGTATGGAACAATTTTCACTGGATCCATT
TTAGAGAGTTCAACAAGTTTTCGTTCCTTGGCTTCACTTACTATGTTAAT
ACCAGTCGTTTTGTATCAGTGCTTAAAGAAAACAGACACAAGCTCTTATA
CTCTATCGCTACTTATTGAAAACGCTGGTATCAATTTAATCCaatgtttt
gataattttattgTTCACATATCAATGGCAACTGCGTCAGCCTTTGTTTT
AATGTCTGTTACTAACTCATACGAGCCTGTGCTCTCCATAGTCGAAACAC
TAGGCTCAGCTCCTAAAAGTTCGGTCGTCTATTTCGAAGGCTATAATCGA
ATtcgttttttattattttgtgcGGTGAGCTCTCTCCTCCCTATATGTTA
TTTACTCGTGCTACTGTACCGTGTTGTTGTGACGCTTGTTCAGAATTGTA
AGCAATATAGAGAAGAACAACGGCGGATGAGAGAGAATGGTGAAACAGCA
TCAACGGTGGAGAACGGAGAGTTTGTTTACATTAGAATCTCCTTCGCGGA
GGCTGTTCGTCAACTACAGCTCAGTCGAAGAGAATTAGAAGCTCTACCTT
ACAATCAGAATGAAACGACCCTTCAATACCTCTTATTGCAATGTTTTTAT
ATTACGGGTCATGATCTAGCTTATTGGCATTTCCCAAGACATATATCGCA
GACTTATTTCAAAGGTCGAAACGGGAGTAACGCTTGTACCGTGATTTCTA
TGATTGTCGGGCGGTTTTTTGCCCGTTCTGATCTCGCCTTTCAGAATGAT
GGTTATTTGAATACTGATTGGTTAAATTtgatttacaccgctattgagga
TGGCAATCGTTATTATGACACCCTTATCAAGGAGGTTGGTGTTTTAGATT
TGAGTATAGAAGAGGTTTATGAGCGCCTTGGTCCCGCCCTAAATGTGGCG
TTGGTTCATCCTTCACTACCAATCTCATTTGAAGCAGAAGTCGAGACTGC
AACTATCATCTATCAACTGAAACAACTTTTATTGAAGCGTCAAAAAATGG
TTTGTTTGTTTATTCATAAGAAGCGAACTTCATCCTTTCTTATCTATGAA
ACGGGACAGATGGTTTACGTGGACTCGCACGCCTTTGGTGAAAATGGCGC
ACTAATGGTTTCATCATCAAGTGAAGATACTCTGCAAAACCTTTTAATAT
TTCTGAGAGATATTTTATGTGGCTCAGACAACCAGTTGGCTACACTGACT
ATCGTAGattatgaaaaacgaaaaactaaagaaaatatGTTTTATAAATA
GTGTAAATGTATGACCTTATCATTA Run BLAST on NCBI protein sequence of TCONS_00012223-protein >TCONS_00012223-protein ID=TCONS_00012223-protein|Name=TCONS_00012223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
ENEHCNMYGTIFTGSILESSTSFRSLASLTMLIPVVLYQCLKKTDTSSYT
LSLLIENAGINLIQCFDNFIVHISMATASAFVLMSVTNSYEPVLSIVETL
GSAPKSSVVYFEGYNRIRFLLFCAVSSLLPICYLLVLLYRVVVTLVQNCK
QYREEQRRMRENGETASTVENGEFVYIRISFAEAVRQLQLSRRELEALPY
NQNETTLQYLLLQCFYITGHDLAYWHFPRHISQTYFKGRNGSNACTVISM
IVGRFFARSDLAFQNDGYLNTDWLNLIYTAIEDGNRYYDTLIKEVGVLDL
SIEEVYERLGPALNVALVHPSLPISFEAEVETATIIYQLKQLLLKRQKMV
CLFIHKKRTSSFLIYETGQMVYVDSHAFGENGALMVSSSSEDTLQNLLIF
LRDILCGSDNQLATLTIVDYEKRKTKENMFYK Run BLAST on NCBI transcript from alignment at sc0000141:62498..63822 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012223 ID=TCONS_00012223|Name=TCONS_00012223|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at sc0000141:62498..63822 (Clytia hemisphaerica)
TAATGATAAGGTCATACATTTACACTATTTATAAAACatattttctttag
tttttcgtttttcataatCTACGATAGTCAGTGTAGCCAACTGGTTGTCT
GAGCCACATAAAATATCTCTCAGAAATATTAAAAGGTTTTGCAGAGTATC
TTCACTTGATGATGAAACCATTAGTGCGCCATTTTCACCAAAGGCGTGCG
AGTCCACGTAAACCATCTGTCCCGTTTCATAGATAAGAAAGGATGAAGTT
CGCTTCTTATGAATAAACAAACAAACCATTTTTTGACGCTTCAATAAAAG
TTGTTTCAGTTGATAGATGATAGTTGCAGTCTCGACTTCTGCTTCAAATG
AGATTGGTAGTGAAGGATGAACCAACGCCACATTTAGGGCGGGACCAAGG
CGCTCATAAACCTCTTCTATACTCAAATCTAAAACACCAACCTCCTTGAT
AAGGGTGTCATAATAACGATTGCCAtcctcaatagcggtgtaaatcaAAT
TTAACCAATCAGTATTCAAATAACCATCATTCTGAAAGGCGAGATCAGAA
CGGGCAAAAAACCGCCCGACAATCATAGAAATCACGGTACAAGCGTTACT
CCCGTTTCGACCTTTGAAATAAGTCTGCGATATATGTCTTGGGAAATGCC
AATAAGCTAGATCATGACCCGTAATATAAAAACATTGCAATAAGAGGTAT
TGAAGGGTCGTTTCATTCTGATTGTAAGGTAGAGCTTCTAATTCTCTTCG
ACTGAGCTGTAGTTGACGAACAGCCTCCGCGAAGGAGATTCTAATGTAAA
CAAACTCTCCGTTCTCCACCGTTGATGCTGTTTCACCATTCTCTCTCATC
CGCCGTTGTTCTTCTCTATATTGCTTACAATTCTGAACAAGCGTCACAAC
AACACGGTACAGTAGCACGAGTAAATAACATATAGGGAGGAGAGAGCTCA
CCgcacaaaataataaaaaacgaATTCGATTATAGCCTTCGAAATAGACG
ACCGAACTTTTAGGAGCTGAGCCTAGTGTTTCGACTATGGAGAGCACAGG
CTCGTATGAGTTAGTAACAGACATTAAAACAAAGGCTGACGCAGTTGCCA
TTGATATGTGAAcaataaaattatcaaaacattGGATTAAATTGATACCA
GCGTTTTCAATAAGTAGCGATAGAGTATAAGAGCTTGTGTCTGTTTTCTT
TAAGCACTGATACAAAACGACTGGTATTAACATAGTAAGTGAAGCCAAGG
AACGAAAACTTGTTGAACTCTCTAAAATGGATCCAGTGAAAATTGTTCCA
TACATATTACAATGCTCATTTTCAG Coding sequence (CDS) from alignment at sc0000141:62498..63822 >TCONS_00012223 ID=TCONS_00012223|Name=TCONS_00012223|organism=Clytia hemisphaerica|type=CDS|length=1299bp|location=Sequence derived from alignment at sc0000141:62498..63822 (Clytia hemisphaerica)
CTATTTATAAAACatattttctttagtttttcgtttttcataatCTACGA
TAGTCAGTGTAGCCAACTGGTTGTCTGAGCCACATAAAATATCTCTCAGA
AATATTAAAAGGTTTTGCAGAGTATCTTCACTTGATGATGAAACCATTAG
TGCGCCATTTTCACCAAAGGCGTGCGAGTCCACGTAAACCATCTGTCCCG
TTTCATAGATAAGAAAGGATGAAGTTCGCTTCTTATGAATAAACAAACAA
ACCATTTTTTGACGCTTCAATAAAAGTTGTTTCAGTTGATAGATGATAGT
TGCAGTCTCGACTTCTGCTTCAAATGAGATTGGTAGTGAAGGATGAACCA
ACGCCACATTTAGGGCGGGACCAAGGCGCTCATAAACCTCTTCTATACTC
AAATCTAAAACACCAACCTCCTTGATAAGGGTGTCATAATAACGATTGCC
AtcctcaatagcggtgtaaatcaAATTTAACCAATCAGTATTCAAATAAC
CATCATTCTGAAAGGCGAGATCAGAACGGGCAAAAAACCGCCCGACAATC
ATAGAAATCACGGTACAAGCGTTACTCCCGTTTCGACCTTTGAAATAAGT
CTGCGATATATGTCTTGGGAAATGCCAATAAGCTAGATCATGACCCGTAA
TATAAAAACATTGCAATAAGAGGTATTGAAGGGTCGTTTCATTCTGATTG
TAAGGTAGAGCTTCTAATTCTCTTCGACTGAGCTGTAGTTGACGAACAGC
CTCCGCGAAGGAGATTCTAATGTAAACAAACTCTCCGTTCTCCACCGTTG
ATGCTGTTTCACCATTCTCTCTCATCCGCCGTTGTTCTTCTCTATATTGC
TTACAATTCTGAACAAGCGTCACAACAACACGGTACAGTAGCACGAGTAA
ATAACATATAGGGAGGAGAGAGCTCACCgcacaaaataataaaaaacgaA
TTCGATTATAGCCTTCGAAATAGACGACCGAACTTTTAGGAGCTGAGCCT
AGTGTTTCGACTATGGAGAGCACAGGCTCGTATGAGTTAGTAACAGACAT
TAAAACAAAGGCTGACGCAGTTGCCATTGATATGTGAAcaataaaattat
caaaacattGGATTAAATTGATACCAGCGTTTTCAATAAGTAGCGATAGA
GTATAAGAGCTTGTGTCTGTTTTCTTTAAGCACTGATACAAAACGACTGG
TATTAACATAGTAAGTGAAGCCAAGGAACGAAAACTTGTTGAACTCTCTA
AAATGGATCCAGTGAAAATTGTTCCATACATATTACAATGCTCATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012223-exon-sc0000141-1491911889:62498..63822 | TCONS_00012223-exon-sc0000141-1491911889:62498..63822 | Clytia hemisphaerica | exon |
| TCONS_00012223-exon-sc0000141-1510915933:62498..63822 | TCONS_00012223-exon-sc0000141-1510915933:62498..63822 | Clytia hemisphaerica | exon |
| TCONS_00012223-exon-sc0000141-1575043694:62498..63822 | TCONS_00012223-exon-sc0000141-1575043694:62498..63822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:62498..63822 . |
Blast
The following BLAST results are available for this feature:
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