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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012215 ID=TCONS_00012215|Name=TCONS_00012215|organism=Clytia hemisphaerica|type=transcript|length=1016bp
gattattttattttctagaaTGATTCTGATTAATAACTTCTCAAAGCACC
CTTGCTTAAACATTTATAGTAATCTTTGTATCTATACCTATAGGTCCTTA
TTAAGTAATTAAACACTATTTTGAGAGTTTTACCACGTCCAATTAGAACA
ACAGTGAttatttacaagtcttttaaaaTGAGCAGAGACTCATGTTCAAT
GAAAAAGCTATTTTGTTTCTTAGGAATCTTAAAAGTGATTTATGAAATGT
TTCAAAGCAACTCCTGTATACAAGCTAATAATGGCTTGTGAGAAATTATC
ATGGCTAGTGATAAAGTTGGAGCAAATTGGTCTATTCTAAGAGATGCGAT
TTATGGAAAGCTAACAAATCCACAATCTTTGGATGGTCGGCCATTCTCCA
TTTGCTCAGATGGATTCAAGGCCAACAGAAGGAAACAAGACTTTGTATTA
CACCATGGTATTCAAAACGTTGCTTCCCACCATATTAACTATGCTGAAAG
TTATGTGTCCATGAAAAAAGTTCAATACGATGAAAGAAAGAATTCATGTA
TCATAACCTTCACTGATGGAAATCTTGGACAGCTTGATCTAAACACGCTG
ACCCAAGATATATTCAAATGTCAACATCCTGTCTACGATTTAGCAATTGC
TCACAAGTACAAGAAATATATTGCATTATGCCAGGATAAAAGTCTCAGGG
TACgagtaattttgattttctttcacAAGTGCTTTTTAAAGATCTAGGAA
TAAATAAAGATTTCTAAGAATGAACTGATTTCAAAATGCTGTCACGTGAA
CAAGTTCACTTTAAAAGTTCACGACACCAAGGactaaaatgacgtcaatt
tttggcGAAGACCCTGCAATGTTATTTTTGTAAGAGCAACGGAACTctag
tttataaaaaaatttattttcaactgaggattgtttgtaaaaacatgaaa
ctgccagtattaaaacaataattttcattactttaacTACGATAAATACT
TTGAACAAATTGGAAT Run BLAST on NCBI protein sequence of TCONS_00012215-protein >TCONS_00012215-protein ID=TCONS_00012215-protein|Name=TCONS_00012215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MASDKVGANWSILRDAIYGKLTNPQSLDGRPFSICSDGFKANRRKQDFVL
HHGIQNVASHHINYAESYVSMKKVQYDERKNSCIITFTDGNLGQLDLNTL
TQDIFKCQHPVYDLAIAHKYKKYIALCQDKSLRVRVILIFFHKCFLKI Run BLAST on NCBI transcript from alignment at sc0000141:433392..434780- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012215 ID=TCONS_00012215|Name=TCONS_00012215|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at sc0000141:433392..434780- (Clytia hemisphaerica)
GATTATTTTATTTTCTAGAATGATTCTGATTAATAACTTCTCAAAGCACC
CTTGCTTAAACATTTATAGTAATCTTTGTATCTATACCTATAGGTCCTTA
TTAAGTAATTAAACACTATTTTGAGAGTTTTACCACGTCCAATTAGAACA
ACAGTGATTATTTACAAGTCTTTTAAAATGAGCAGAGACTCATGTTCAAT
GAAAAAGCTATTTTGTTTCTTAGGAATCTTAAAAGTGATTTATGAAATGT
TTCAAAGCAACTCCTGTATACAAGCTAATAATGGCTTGTGAGAAATTATC
ATGGCTAGTGATAAAGTTGGAGCAAATTGGTCTATTCTAAGAGATGCGAT
TTATGGAAAGCTAACAAATCCACAATCTTTGGATGGTCGGCCATTCTCCA
TTTGCTCAGATGGATTCAAGGCCAACAGAAGGAAACAAGACTTTGTATTA
CACCATGGTATGAAACAAAATTTTCGTTTTTTTACAATATCAAATTTTTG
AGCCATTAAAGCTATAGTTTCTTAAATTAAATTTATAAACCGTTTTTAAG
TTCAAGAGTTTCATTCAGTTTCCTGCTCTGTTCAAAATTTTAAGTGTCAA
TGTTGCACTGTTTTGGAATTTTTCCATTACAGTTTCAGGGTATTGACAAT
TTAAAATTTACAATATAAGGTTAACTGGAGACACACCTGTATATTCAAGA
ACTCTATGTCCGAAAAAAAGGTCACAAAATAACAACTTTGTCTCCTTTAC
TGCCTTTCAACTTGACAAAACTCCAAAGATTTAAAAAAATTATAAGATGA
TTTATTGATTCCTCATATGTTTTCTTACAGGTATTCAAAACGTTGCTTCC
CACCATATTAACTATGCTGAAAGTTATGTGTCCATGAAAAAAGTTCAATA
CGATGAAAGAAAGAATTCATGTATCATAACCTTCACTGATGGAAATCTTG
GACAGCTTGATCTAAACACGCTGACCCAAGATATATTCAAATGTCAACAT
CCTGTCTACGATTTAGCAATTGCTCACAAGTACAAGAAATATATTGCATT
ATGCCAGGATAAAAGTCTCAGGGTACGAGTAATTTTGATTTTCTTTCACA
AGTGCTTTTTAAAGATCTAGGAATAAATAAAGATTTCTAAGAATGAACTG
ATTTCAAAATGCTGTCACGTGAACAAGTTCACTTTAAAAGTTCACGACAC
CAAGGACTAAAATGACGTCAATTTTTGGCGAAGACCCTGCAATGTTATTT
TTGTAAGAGCAACGGAACTCTAGTTTATAAAAAAATTTATTTTCAACTGA
GGATTGTTTGTAAAAACATGAAACTGCCAGTATTAAAACAATAATTTTCA
TTACTTTAACTACGATAAATACTTTGAACAAATTGGAAT Coding sequence (CDS) from alignment at sc0000141:433392..434780- >TCONS_00012215 ID=TCONS_00012215|Name=TCONS_00012215|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000141:433392..434780- (Clytia hemisphaerica)
GTATTCAAAACGTTGCTTCCCACCATATTAACTATGCTGAAAGTTATGTG
TCCATGAAAAAAGTTCAATACGATGAAAGAAAGAATTCATGTATCATAAC
CTTCACTGATGGAAATCTTGGACAGCTTGATCTAAACACGCTGACCCAAG
ATATATTCAAATGTCAACATCCTGTCTACGATTTAGCAATTGCTCACAAG
TACAAGAAATATATTGCATTATGCCAGGATAAAAGTCTCAGGGTACGAGT
AATTTTGATTTTCTTTCACAAGTGCTTTTTAAAGATCTAGATGGCTAGTG
ATAAAGTTGGAGCAAATTGGTCTATTCTAAGAGATGCGATTTATGGAAAG
CTAACAAATCCACAATCTTTGGATGGTCGGCCATTCTCCATTTGCTCAGA
TGGATTCAAGGCCAACAGAAGGAAACAAGACTTTGTATTACACCATGGTA
TTCAAAACGTTGCTTCCCACCATATTAACTATGCTGAAAGTTATGTGTCC
ATGAAAAAAGTTCAATACGATGAAAGAAAGAATTCATGTATCATAACCTT
CACTGATGGAAATCTTGGACAGCTTGATCTAAACACGCTGACCCAAGATA
TATTCAAATGTCAACATCCTGTCTACGATTTAGCAATTGCTCACAAGTAC
AAGAAATATATTGCATTATGCCAGGATAAAAGTCTCAGGGTACGAGTAAT
TTTGATTTTCTTTCACAAGTGCTTTTTAAAGATCTAGATGGCTAGTGATA
AAGTTGGAGCAAATTGGTCTATTCTAAGAGATGCGATTTATGGAAAGCTA
ACAAATCCACAATCTTTGGATGGTCGGCCATTCTCCATTTGCTCAGATGG
ATTCAAGGCCAACAGAAGGAAACAAGACTTTGTATTACACCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012215-exon-sc0000141-1575043694:434324..434780 | TCONS_00012215-exon-sc0000141-1575043694:434324..434780 | Clytia hemisphaerica | exon |
| TCONS_00012215-exon-sc0000141-1575043694:433392..433950 | TCONS_00012215-exon-sc0000141-1575043694:433392..433950 | Clytia hemisphaerica | exon |
| TCONS_00012215-exon-sc0000141-1510915933:434324..434780 | TCONS_00012215-exon-sc0000141-1510915933:434324..434780 | Clytia hemisphaerica | exon |
| TCONS_00012215-exon-sc0000141-1510915933:433392..433950 | TCONS_00012215-exon-sc0000141-1510915933:433392..433950 | Clytia hemisphaerica | exon |
| TCONS_00012215-exon-sc0000141-1491911889:434324..434780 | TCONS_00012215-exon-sc0000141-1491911889:434324..434780 | Clytia hemisphaerica | exon |
| TCONS_00012215-exon-sc0000141-1491911889:433392..433950 | TCONS_00012215-exon-sc0000141-1491911889:433392..433950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:433392..434780 - |
Blast
The following BLAST results are available for this feature:
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