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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012210 ID=TCONS_00012210|Name=TCONS_00012210|organism=Clytia hemisphaerica|type=transcript|length=3617bpRun BLAST on NCBI protein sequence of TCONS_00012210-protein >TCONS_00012210-protein ID=TCONS_00012210-protein|Name=TCONS_00012210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1053bp MKRFLLLFLLSLCFYEISGFVRNIKGNTFSCPTLSTGAEAEGVIDLTMAERun BLAST on NCBI transcript from alignment at sc0000141:357118..373649- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012210 ID=TCONS_00012210|Name=TCONS_00012210|organism=Clytia hemisphaerica|type=transcript|length=16532bp|location=Sequence derived from alignment at sc0000141:357118..373649- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000141:357118..373649- >TCONS_00012210 ID=TCONS_00012210|Name=TCONS_00012210|organism=Clytia hemisphaerica|type=CDS|length=44268bp|location=Sequence derived from alignment at sc0000141:357118..373649- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012210 vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 1.043e-37 Identity = 97/322 (30.12%), Postives = 165/322 (51.24%), Query Frame = 1
Query: 2311 NTTCSFW-VEDSNHQYYWSDQGCKTVNQTIDHVICQCNHLTNFAILFDVQQTAQHSPSSKGL-EIMTKIGCGVSIAGLTLTVFFHLFIAKLRTKXXXXXXXXXXXXXXXXXXXFVLFAEKWSSMSRLSCQLVAGGIHFFLLSSFAWMIVEGYNLHSSIVSIFLIRGGERFFWWALSFSIVIPAGLVGSNYALYPQSLGNERFCVVHGPGFYMF-ILAPIIFTIIFNAVILVRIIHTIRXXXXXXXXXXSRPEDENIRLKMIRIAFTCSCIMGLSWIFGIFAIEDASVVFQWLFTIFNSLQGFFIFVMHTLRNKEIQNQIRNC 3267
N CSFW + YWS QGCK V+ C C+HLTNFAIL ++ A + L ++T +G +S+ L + +F F L++ ++ + I F+ + ++C + AG +HFF L++FAWM +EG L+ +V +F + +++ + + PA +VG + A+ +S G E+ C +H ++++ + P+ F I+ N + LV + + K K SR E NI+ + AF C++GL+W FG+ I + ++V +LFTIFN+ QG FIF+ H K+++ + C
Sbjct: 785 NANCSFWNYSERTMMGYWSTQGCKLVDTNKTRTTCACSHLTNFAILMAHREIAYKDGVHELLLTVITWVGIVISLVCLAICIFTFCFFRGLQSDRNTIHKNLCINLFIAE---FIFLIGIDKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESEYSRKKYYYVAGY--LFPATVVGVSAAIDYKSYGTEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLE--NIK-SWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKC 1098 The following BLAST results are available for this feature:
BLAST of TCONS_00012210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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