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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012209 ID=TCONS_00012209|Name=TCONS_00012209|organism=Clytia hemisphaerica|type=transcript|length=869bp
GTCGAAGGATATAACCTGCATTCAAGTATTGTTTCTATCTTCTTGATACG
TGGTGGTGAGCGCTTCTTCTGGTGGGCTTTGTCGTTTAGTATAGTGATAC
CAGCAGGACTTGTTGGATCGAATTACGCCTTATACCCACAATCACTTGGA
AATGAAAGATTttgcGTTGTCCACGGTCCTGGTTTTTACATGTTCATATT
GGCGCCTATTATTTTTACTATCATCTTCAATGCTGTTATTCTGGTCCGCA
TAATACACACCATCCGAAAATcagacaaaaaattcaaaaataaaaaatca
agacCAGAAGATGAGAATATAAGATTAAAAATGATTCGCATTGCATTTAC
ATGCAGTTGCATTATGGGTTTAAGTtggatttttggtatttttgcaATCG
AGGATGCTTCAGTTGTGTTCCAATGGTTATTTACTATCTTCAATTCGTTG
CAAGGattcttcatttttgttatGCATACTTTGCGGAACAAAGAAATACA
GAACCAGATACGGAATTGTCAAGTACGCGCCCAGGGAGCAAACTCTCTGC
AAAATTCTCCTAAAAGCCTTCAATCGCAGAACACCATAAACATGACACTT
CGATAATTGAtcatcaaaacatgaaaaataccttatcggggaaaaaatgt
cggggttATAATTAgtcggggaaaaaattcgtcacctacatagaggcatt
ttcgtcacttttccccgaccaaaattattcaaattcgtcacttttccccg
accaaatttacaattttagtCTCTTCCACTTGACTAAGTTGTCCAAATAA
AATAGTTTCCTTAAGTAGCTCGGAAATAGATtacgacgtttaaagcacta
aattcggttaataaaggtg Run BLAST on NCBI transcript from alignment at sc0000141:357118..358863- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012209 ID=TCONS_00012209|Name=TCONS_00012209|organism=Clytia hemisphaerica|type=transcript|length=1746bp|location=Sequence derived from alignment at sc0000141:357118..358863- (Clytia hemisphaerica)
GTCGAAGGATATAACCTGCATTCAAGTATTGTTTCTATCTTCTTGATACG
TGGTGGTGAGCGCTTCTTCTGGTGGGCTTTGTCGTTTAGTATAGGTAAGG
AGCTCTCTTTTATCGACCGAAATCATAAAAATAAGATTTTGACAAAAAAA
AGGCAATTTGGAGCTTTACAGAGCGTGTCAGTTTTTCATTATATTGACCT
TTTTTAAAGGCCTCTTTAAGTTTAAGCCGGGTAGCTCAGTCGGTAGAGCA
GTCACCTTGCAATCATGGTTGTGGGTGGGTTCGATCCCCAGTGCCCACTC
GCCTAAGTTATATTTGGTAATCTGATTTGGGCGGGAAGTAACTGGGAGCT
GATATAAGTTGTGGCGCTCTACTTCAGCATTCGATCTCCCAGGTTAAGTG
CAAAAAAAATAGGGGATAGACTCCTCACACTCCCGGCCCCAGCGACAGCC
ACTAGATGAATAAATTTACTTAATTAAGCTATTTAGATTTTCTTAGAGAA
AAGAATTTCTCAGGAGAAAAGGTCAGGATTTTTAAAATCTTACCCTATCG
AATAATCGGAGCCTCGGCCTCGTGATTGATCGATGAGAGTCGTTGAATTA
CTAATGCTCAATATTGTTGTTTTCTTATATTTAACCACATCTTTGTGGCT
CTTGTTTCCTTATAGTGATACCAGCAGGACTTGTTGGATCGAATTACGCC
TTATACCCACAATCACTTGGAAATGAAAGATTGTAAGTCAAACATATCAC
ATCAAAAGTCAAAATGGCTAAAGTTCTAAGCTATGGTCTAGAAATAATAT
TAGAAAACACCTAACCTTTGAAAACCTTGTAGGTAAAGCTTGNTATGGTC
TAGAAATGATATTAGAAAACACCTAACCTTTGAAAACCTTGTAGGTAAAG
CTTGAATTTATTTATGTAATTTTTTGATACCAATTTTCAATTTCCATTTG
AAAGAATTAAACTGATGGCATAACCTGCTGGTCTTATTTATAAAAAAAGA
TTGCTAATTCTGAATATGATATATCTTTTTTTTTTTAGTTGCGTTGTCCA
CGGTCCTGGTTTTTACATGTTCATATTGGCGCCTATTATTTTTACTATCA
TCTTCAATGCTGTTATTCTGGTCCGCATAATACACACCATCCGAAAATCA
GACAAAAAATTCAAAAATAAAAAATCAAGACCAGAAGATGAGAATATAAG
ATTAAAAATGATTCGCATTGCATTTACATGCAGTTGCATTATGGGTTTAA
GTTGGATTTTTGGTATTTTTGCAATCGAGGATGCTTCAGTTGTGTTCCAA
TGGTTATTTACTATCTTCAATTCGTTGCAAGGATTCTTCATTTTTGTTAT
GCATACTTTGCGGAACAAAGAAATACAGAACCAGATACGGAATTGTCAAG
TACGCGCCCAGGGAGCAAACTCTCTGCAAAATTCTCCTAAAAGCCTTCAA
TCGCAGAACACCATAAACATGACACTTCGATAATTGATCATCAAAACATG
AAAAATACCTTATCGGGGAAAAAATGTCGGGGTTATAATTAGTCGGGGAA
AAAATTCGTCACCTACATAGAGGCATTTTCGTCACTTTTCCCCGACCAAA
ATTATTCAAATTCGTCACTTTTCCCCGACCAAATTTACAATTTTAGTCTC
TTCCACTTGACTAAGTTGTCCAAATAAAATAGTTTCCTTAAGTAGCTCGG
AAATAGATTACGACGTTTAAAGCACTAAATTCGGTTAATAAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012209-exon-sc0000141-1575043694:358770..358863 | TCONS_00012209-exon-sc0000141-1575043694:358770..358863 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1575043694:358132..358198 | TCONS_00012209-exon-sc0000141-1575043694:358132..358198 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1575043694:357118..357825 | TCONS_00012209-exon-sc0000141-1575043694:357118..357825 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1510915933:358770..358863 | TCONS_00012209-exon-sc0000141-1510915933:358770..358863 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1510915933:358132..358198 | TCONS_00012209-exon-sc0000141-1510915933:358132..358198 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1510915933:357118..357825 | TCONS_00012209-exon-sc0000141-1510915933:357118..357825 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1491911889:358770..358863 | TCONS_00012209-exon-sc0000141-1491911889:358770..358863 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1491911889:358132..358198 | TCONS_00012209-exon-sc0000141-1491911889:358132..358198 | Clytia hemisphaerica | exon |
| TCONS_00012209-exon-sc0000141-1491911889:357118..357825 | TCONS_00012209-exon-sc0000141-1491911889:357118..357825 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:357118..358863 - |
Blast
BLAST of TCONS_00012209 vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.261e-19 Identity = 52/174 (29.89%), Postives = 94/174 (54.02%), Query Frame = 1
Query: 1 VEGYNLHSSIVSIFLIRGGERFFWWALSFSIVIPAGLVGSNYALYPQSLGNERFCVVHGPGFYMF-ILAPIIFTIIFNAVILVRIIHTIRXXXXXXXXXXSRPEDENIRLKMIRIAFTCSCIMGLSWIFGIFAIEDASVVFQWLFTIFNSLQGFFIFVMHTLRNKEIQNQIRNC 519
+EG L+ +V +F + +++ + + PA +VG + A+ +S G E+ C +H ++++ + P+ F I+ N + LV + + K K SR E NI+ + AF C++GL+W FG+ I + ++V +LFTIFN+ QG FIF+ H K+++ + C
Sbjct: 930 LEGVQLYLMLVEVFESEYSRKKYYYVAGY--LFPATVVGVSAAIDYKSYGTEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLE--NIK-SWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKC 1098
The following BLAST results are available for this feature:
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