TCONS_00012196 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012196
Unique Name	TCONS_00012196
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	834

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000141:179908..187413-

transcript sequence

>TCONS_00012196 ID=TCONS_00012196|Name=TCONS_00012196|organism=Clytia hemisphaerica|type=transcript|length=834bp
atagtTTAAGACACATAACCTTTAATACTTGCTACATCAAGTTTTGTGGT
GTTTTTCAATAAATATGACAAgAGGTAATCAGAGAGAACTTGCTCGTGCC
AAAAACGCTAAAAAACTAGAAAAAGCAAAGAAGGCTGAAGGGAATAGCGA
TTTTCAAAAACGAAAAGAATCTGATGCGGACAAGATGAGAGAGAAACAGA
AGAAAGCGGAAGAACGGAAACAAATGGAAGCATCCGGAATAACACCTCCA
GAGGAAGAAGCAAAAGGCAAGAAGAAGGACGGCAAGAAGAAGTGAAAACA
TCTCAACCATAATCTTTCATGTGAACGTCTCTTAAGAGTAATCACAACca
ttataaaatataaaaataacaaCAATGGGAATTTCCTTCAGAAGAAATTT
GCTTtcatctgaaaaatatttgatacacacttttttgtacataacaaaat
tttataaatagaTAAATGAATAACTGTCTGAAAGATCGAAACAGCCGGAT
GGTTCTTGCCAGAACCGGTAAAATCCATTATTAGGCTCGgttattaagca
gatattcaataggtaaaagttggttaataaatccaataccCAACGAAAAc
atattgaatatatgttttattatatacctaagGCAAAAACAAGACATTAA
TTATGTTAATAGTCGAACGTTTCacttaaaacactcccataatcgaacgt
tcaaatgttattttatttttaatgattttcttaaatactttgaatcataa
aatttgttcatgaaattgacaatagatttattttaatgaatttctttgat
acaacaagagcgacaaaaaaaatcaaactttgaa

Run BLAST on NCBI

transcript from alignment at sc0000141:179908..187413-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012196 ID=TCONS_00012196|Name=TCONS_00012196|organism=Clytia hemisphaerica|type=transcript|length=7506bp|location=Sequence derived from alignment at sc0000141:179908..187413- (Clytia hemisphaerica)
ATAGTTTAAGACACATAACCTTTAATACTTGCTACATCAAGTTTTGTGGT
GTTTTTCAATAAATATGACAAGTAAGCAATACAGTTCCTTTTTTTCTTTC
TTGTAAACTGAGGTTTATAAAGCAAGTGGATAAACTGGGGTTTAGAGATG
TTTCTTAAAGTGACAAAAAAAGCGAGTGGATAAACTGAGGTTTAGAGACA
TTTGTTAAAGTGACGAAAAAAGCAAGTGGATATAAACTTAGGTTTAGAAG
AGACATTTGTCAAAGTGACGAAAAAAGCGAGTGGATAAAGTGAAGTTTAG
AGATATTTGTTACAGTGAAAATAAAATTACAAGAAAAGAGTCTGTACCGT
GAGTGGTCCTAAATTTACAACTCACATTTTTTTATCACATTAATTGACAT
CTTGACATTATAGTCATCTTGTTAGATGTTTTGTTTCGAGACTTCTTGAA
ATACAGTTTATTGTTCAACTTGGAGAGGGAATGTTTGTAAACATAGAATT
TTTTTCATAGTAGTTATTTGGGGGGGTCGGATTTAGGCAGGGCTGTCGGA
TTTCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACGCAAACTACCCA
TGTCTAAACTTTTCAATATATCTCCAGAACTAACAGATTTTTTGAAGATC
TGTAAAAAGGTCTAAGTTCCTGAATAGTTTTACTATGTTCTATGGAAAAA
TCATAAGCATCAGTCAAATACTCGTTCATCTATTTAAGATTGAACACAAA
AATTTGCGAAGAAAAATATACCTTGAGCACAAAAAATGCTTTTTTAAACA
CTTTTTTCCACCGAAAAACAAATAACTTTTACAGACTTACCTTCCCCAAA
CATTGAAGAAGCCTCTACTAATTAAAGTAAATGAGATAGGATAAGATAAA
ACCTTAAAATCAACCAGAATTTACAACCTTTCTTCCAAAGCAAAAGACGT
GCTTTTCTCGCCGCCATCTTGAATTTAAAATGAGAATTCTAGAGAATTCC
ATTCGTTTCCAGCTCCCGCGGTCTTTTTTCATCCAATCANNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNCCCCCACACTGTCTGGCCAGTCAACTTT
GATGATTTTTGAAGGGAAAGCACAAATTTTTCCAAGACTAAAATAAAAAC
TAACTGTAGTCATCTATCTATGACGCAAACAAAAGTATTCCTACTAAACT
CAACACGAATCAAACAATCAAGAAAAAAAACAGAAGTTCAACATTACAAA
CTTCATCGCAAACCAAATGGCAATGTACGAAAAAGATTTGTGGCTGGATG
GCAACGAAAAGAATTTTCACCCGACCGGTGGACTGGGTCGGCCTTACTTA
GGAATATCTTTTTCTTTTCCTTGGTAAATATTCTTTAGACAAGTTAGAGT
GGGAAGATTCACCATTAAAAATGTTATCTCCTTTGATAAAGTTAAGGCCC
TCATACGGTACCCTTGTCAATAATAAATCAATATTCTGCAAAAAAAGATT
TTAGTGATGATTTCTTGGAAAATAAAAGATTTTCCACAAAATTTGACTAT
ACAGTAATGGGGCAAAAAATTTCATACCCTCTCACTGTGAAAAATAATTC
ATTGAAAATAAGCGTCTGTAAATGTTATTTCCCTTTTAAGGTAGTTACAC
AAAATAAAAGCAAAACTTACCTCAAAAGGGATGGCTGTTGAAAATTACCT
AAATACATGTGCCAACTGCTGCCATCCCATATCAACTAAGCTTAAAACTA
AGAACTTGATTTCTTACCATCTTCAATCCCATGAGCACAAGAAAGCTGGT
GGAGTGTTTTTACAAAACCAATCAAACAGCACTCAGTGTTTTAGCCCAAA
AATCACACCTACACGTTATGAAGTCATAATTATAAACCTTTTTTTGAAGA
TGTTTTCATCCCTAAAAATTTCTTTTGACATGATATAGAGAATTCCCCAA
AGTCATTTCGCATGAAATAATTGCTTTCTCAAGATTTCTAAGCCAAACAA
AAGACAAACACAGACCAAATCCATTGGTGAAGAGTAAAAAAAAAAGAAAA
ACATATAGGCGCCCAAGTCAAGACAGGAATTATAATCTGTCAATCAAAAC
AAAAGTCATCTTTTAAAAGAGCAAAACATTGCTTGCGAAAACGAAAGTAC
TAGACAGTCAGACAAACAAACAAACAAACAAAGTGACATACAGACTACGA
TTATTAGTATATAGACAATTAGAAGCGAAAAATTGTCGTTTTGATTGACA
GGCAAATACTTAAATCTTATCGGATGTGGAATAACAAGCTGCAAGTAGAT
ACGTTTGTGACCAGGCGTCATAAGTGTAGTAAAAACTCTTTGAACGCCTA
ACAATCTGGCTAGAAAGATATGTATTTAGATTTTATCATGATGGTATCTT
AATGTCAGCCTCCATTTCTTTTCTTCTTTTTTTTCTGTTCACTAATGATG
ATTTAATGAAATCTATTTTCTCTTTTTTCATTTAGGAGGTAATCAGAGAG
AACTTGCTCGTGCCAAAAACGCTAAAAAACTAGAAAAAGCAAAGAAGGCT
GAAGGGAATAGCGATTTTCAAAAACGAAAAGAATCGTAAGTACCTTTGAA
CTTCTTATTGATTAATTTTTAGCTGAAAAAGAACCTTTTACCCTATTATA
TACCCTATACCCTAATTCTAGGTTTTTAGGGGCGGTTCGGAATTAGAAAG
GGGGCTTTTCCTTTACCACTCCCTCAATTTTTTATCTAATTGTTTTTTTT
GAATGAAAATTGGTACACAAGATCCTTGTAATACATATAAGCCATATAAG
GTAACTTCTGGTAATAATCTTTTGACGACGTCACTCAATATACCTAAAGT
TCCCTGAGTTTTTAAAAAGTTTATAAAATAAGTTCATAAACGCCTAATTT
AGGACGTTGTGTGGACCTGCCTGAATGATAGAAAGGTGCCCAGTAGTAAA
ACTTCAAATTGATTCGCTAGAGCACAGAATAAAGTAAAACAGGGCCAATT
TTGGAGGTTCTTGAATCACTCGTTGACAAAAATTGGTCAAAAAACGGTCG
ATATCTTAAAAAAGTAGATTTTTGTCAAATTTTTGCATTTTTGTGAACTT
TTTTTTTATCTAAATTTTCATAACTCTAACTAATAATCAGGCCAAAGTAT
TATTTTCTTTTTTACGGCCAGATTTGAACATTCCCGGCTTTAAAATTCTA
TTCTACAATATACCAAACATTCCATTCTACTAATAAACCCTGCTTTTTTG
AATTGCACCTTTTATGAAAAAGTATAAACCCTAGTATGAAATCTTTCGTT
CGTGATAGTTTATACTAACAGTTCTTACAGAGACCTACCGGGTGACCCAC
GAAAAAGTTCAGACGTTTCCCGACGTCTTGAGGCCAAACAAATGTCCCAA
AGTGCTTGGAGTTTTGATATTTAGAAAGTAGATATCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTCATGCAA
TCAATTAGAAAATCACTTACAAATTGACTTATTTAACGAGTTTTATGACA
TTAATAATTAATAAAAACACCTTTGAAAGTAGTTTTTATAAAAATTGGCG
CTTTCATAGATTTTTTATTAAAAACTGTATATCAAAAACGTCTAAAAATA
CCAAATTTGATACCCCTTTTTTACGTGTTTTTTACACTTTCCGTAAAGTG
AATTTTGACTTTAAAAGCTNNTTGATAGCTCAAATTTTAAGTTAGGATAT
CTACTTTCTAAATATCAAAACTCCAAGCACTTTGGGACATTTGCTCGGCC
TCAAGACGTCGGGAAACGTCTGAACTTTTTCGTGGGTCACCCGGTATTAA
ATTCAAGGTCATCGTGCAAGTCTTTATTTGCCTAAACAGCGGCCATTCAT
ATAGTAGGTACGCAGTGAAGGGGGAGAGAAAGGGGTTGAGCAAAAGCATA
GTCTATTGTTTGAATCACGTCGTTTCTATTCTTCTTTGTGTAAGGGAGAG
GGGTGTCAGAAATTTCTACGTATATACTAGGGGTCATGTGTTACAGTATA
CCCATAAAATGTTTTTTTCGGTCAAACTATTTGCGTGTCTCAGACAATCA
AACCTTTCTTCGACGTTTTCTCGTGACTTTTTTATATGAATCTGCTAATA
AGAAATTTGTGTATTGATATGTGTGATTGTTATATTCTTTCAGTGATGCG
GACAAGATGAGAGAGAAACAGAAGAAAGCGGAAGAACGGAAACAAATGGA
AGCATCCGGAATAACACCTCCAGAGGAAGAAGCAAAAGGCAAGAAGAAGG
ACGGCAAGAAGAAGTGAAAACATCTCAACCATAATCTTTCATGTGAACGT
CTCTTAAGAGTAATCACAACCATTATAAAATATAAAAATAACAACAATGG
GAATTTCCTTCAGAAGAAATTTGCTTTCATCTGAAAAATATTTGATACAC
ACTTTTTTGTACATAACAAAATTTTATAAATAGATAAATGAATAACTGTC
TGAAAGATCGAAACAGCCGGATGGTTCTTGCCAGAACCGGTAAAATCCAT
TATTAGGCTCGGTTATTAAGCAGATATTCAATAGGTAAAAGTTGGTTAAT
AAATCCAATACCCAACGAAAACATATTGAATATATGTTTTATTATATACC
TAAGGCAAAAACAAGACATTAATTATGTTAATAGTCGAACGTTTCACTTA
AAACACTCCCATAATCGAACGTTCAAATGTTATTTTATTTTTAATGATTT
TCTTAAATACTTTGAATCATAAAATTTGTTCATGAAATTGACAATAGATT
TATTTTAATGAATTTCTTTGATACAACAAGAGCGACAAAAAAAATCAAAC
TTTGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006863	XLOC_006863	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012196-exon-sc0000141-1575043694:187343..187413	TCONS_00012196-exon-sc0000141-1575043694:187343..187413	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1575043694:182379..182478	TCONS_00012196-exon-sc0000141-1575043694:182379..182478	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1575043694:179908..180570	TCONS_00012196-exon-sc0000141-1575043694:179908..180570	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1510915933:187343..187413	TCONS_00012196-exon-sc0000141-1510915933:187343..187413	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1510915933:182379..182478	TCONS_00012196-exon-sc0000141-1510915933:182379..182478	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1510915933:179908..180570	TCONS_00012196-exon-sc0000141-1510915933:179908..180570	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1491911889:187343..187413	TCONS_00012196-exon-sc0000141-1491911889:187343..187413	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1491911889:182379..182478	TCONS_00012196-exon-sc0000141-1491911889:182379..182478	Clytia hemisphaerica	exon
TCONS_00012196-exon-sc0000141-1491911889:179908..180570	TCONS_00012196-exon-sc0000141-1491911889:179908..180570	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000141	supercontig	sc0000141:179908..187413 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.8502	64.5639	92.4951	85.8801	79.7835	65.0341	146.288	129.541	59.2609	41.6268	95.5444	94.8202	79.2914	74.6237	65.2121	87.5564	100.825	93.7903	59.5204	56.3065	81.8504	81.8032	58.584	53.1886	79.4838	77.8692	35.2805	31.9638	31.7102	32.9817

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00012196 vs. Swiss-Prot (Human)

BLAST of TCONS_00012196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00012196 (transcript) - C. hemisphaerica