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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012187 ID=TCONS_00012187|Name=TCONS_00012187|organism=Clytia hemisphaerica|type=transcript|length=1769bpRun BLAST on NCBI transcript from alignment at sc0000141:74409..105377- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012187 ID=TCONS_00012187|Name=TCONS_00012187|organism=Clytia hemisphaerica|type=transcript|length=30969bp|location=Sequence derived from alignment at sc0000141:74409..105377- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012187 vs. Swiss-Prot (Human)
Match: S35A4 (Probable UDP-sugar transporter protein SLC35A4 OS=Homo sapiens GN=SLC35A4 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.540e-25 Identity = 97/283 (34.28%), Postives = 153/283 (54.06%), Query Frame = 3
Query: 105 WPFLLVIGVVFGSLHSILINLGKDVNGKIPFHSASVAFCIEFAKITTSLTLLFIEWLXXXXXXXXXXXXXXLPRTAIFLFMVPALLYAVVNNLVTHAQKFMDPASFQLLNNLKIVSTAFLYKLIIKKEITSRKWMAIFLLFIGGSVNSMRGL--------VKTEERNTNELKSYITTNGLLLVLIYCGASSLAGVYTEAVLKKYRTTSINLQNSVLYTFGLLANVCVFLFSSNDQNKPITITGFFDGFSIYTWLIVLTQALNGLLISLIMKYLSNIVRLFMIA 929
W +L++ H+ L+ L V+G++PF +S E K+ L + W Q P F + ALLY NNLV + Q++MDP+++Q+L+NLKI STA LY L ++ ++ R+ +A+ LL G+ + GL + + +IT GLLL+++YC S L+ VYTE ++K+ R + LQN LYTFG+L N+ + + + P G +GFS + L+VL+QALNGLL+S +MK+ S+I RLF+++
Sbjct: 19 WTLMLLLSTAMYGAHAPLLAL-CHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGW--------QAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLP-LALQNLFLYTFGVLLNLGLH---AGGGSGP----GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVS 284 The following BLAST results are available for this feature:
BLAST of TCONS_00012187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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