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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012179 ID=TCONS_00012179|Name=TCONS_00012179|organism=Clytia hemisphaerica|type=transcript|length=600bp
attgcatcgACATAGAAAGATGaaATCGTATTCGACAAACACACTGACAC
GAGCTGATTCTaccgaagaagaaaatgaatgcAAAACTTATGAAGGTATC
ACATTATGCGTGTATCGTCTGGAACCAGAAATCACGAAAGAACAGTTGAA
AGAAGTCTTCTCTAAATTCGGACACGTTTTAAAATGTACCGTAACAGAAG
AATGTTCCGGACCTCTACCCTACCGCATCGGAAGCATCGCGTATTATTCC
CCACTAGAAGCACAACAAGCTATTCGATATATGAACGGTAAAGCTATCAT
TCAAAACAACATTTATGTTGGTTTACAGACACGGAAAAAAGAGAGGCGAC
GATCATCAAGAACTAGCCCGCCACCTTCGGCATTGCTTCTCCCGCCCCCG
AAAGAGGGCGCTGAAATTGAAAATCGGACTGAAAGATCTTTTAGTGAATC
AGTAACGACAAGTGGTAGTGGTGGTCAGAGTGTGGGTGAAAAATTGATTC
AATTTAAAAGACTTTGTCGCACGAGGTCGTTGAACACCAGTGCTTTGGAT
ACTCACTcttaattcaaatattttttaaacatacaGTGTGTCATGAAAAA Run BLAST on NCBI transcript from alignment at sc0000141:8554..15162- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012179 ID=TCONS_00012179|Name=TCONS_00012179|organism=Clytia hemisphaerica|type=transcript|length=6609bp|location=Sequence derived from alignment at sc0000141:8554..15162- (Clytia hemisphaerica)
ATTGCATCGACATAGAAAGATGGTATGTCATGATGCAAAAAAAGAGAGCA
TTTTTTAGGAATTTTGGTTGCTCTTATGCTTTCTAATGTATCTTGTTTCA
CCAATAATGTTATCCTCTGCATATATGGCCCCCATATAAGGAGATCGTAA
ATTTACTTAACAAACAAAAATTAATTACACATTTTTAGGGGAAAAATGTG
GGGTATGATTGGGTCAGTATATTCTGTGTTGATCAAGTTTAACCGAAATC
CCATCTCAACGTGACGCCTTTTGGCCAATAATATTGCAGAATAACTTGGG
AAGAAATTTCAGTGAGAAGAAATCAATGTAAATTTTTTGGTCATTCGCCT
AATTAATTATCGCCAAATCATTTTAAATTAATTTTAAGTTCAAATTTATC
CTTAAAAACACCGTTAGGCAAAAATAGGTACTGGGTATGTGCGGACGGCA
AGATTCGGTTTTTTCACCTTCGATAGTGTCTTTAAGGGTTACGAAAATTT
TTCAGTAAAAATCAGTCCCTCTAATAAGTGTCTAATTTCTCAAAAAGATT
TCGCCTAATTGTATGTAAATGGACATATTTGACTCATTCACTAAAATTTC
TTCTCACTGAAATTTCTTCTTTTAAAATAATCGATGTGGGCTGATCTTCC
CAGCTGGCCCACAACGTTGTTTCAACATTTATCTAATGTTCATAACGTCC
ATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCAGCTGGGTTGT
ACTATTTTGTAATCATCCTTTAAAAACACGTCATGGACGACCAAAGTTTG
AAAAATAATCCATATGGATCCCACATCGGATTGATCTATATTGAACCCAT
TTCTCACTAGCACACTAATTCAAGTGTTAAATTTCGATTACACTATCTCG
TACAATTCATTTGTTGAAGCGTTGGCTCCAAAAGCGTGAACTCCAACATT
CGTGAAAGAAGTTATTACAAAAATATGACACCCTGCTCAATGATTTTCAA
GACTGTTAATCAGATTGTGACATTTTAAACCCAATTTCTATTTTTCAGGG
GTACTACTAACATGATGTTTGAATCGATTTAGGCTAGTGAGACAGGATCT
TAAATCGCTAGTCAAATTCACATGACTTCACTCATTTTCTTTTATAAGAA
CAACTTATAAGAACAATGAGGCTCATAATTGCCAGATACAAGAATAATTT
ATGAACAATGCTGGGCCCGAAATTACTCAATTTCAAGCAATTTAGGGGTC
AAAGTAGTAAAAATTGGGTAAAAAGCCTGAATATAAATAAGAACAGGATA
AGAACAATTTGATTCTCAAAGTGCCAAAACATTAAGAACTTTTACTGGTT
CTCATAAAAAAGAAAGAGTGTATTTGAGGTTTTGTTTCCTTTGGCCCATA
TAGTCAAATTCACTCTCTGTGAAATGCGGCTTCTTTTGGTAAGTCATTCA
GTCGTGATTTTATGTATGTTAGACTTATCACCTTAATCTTTGAAGTCTGT
CCTGTGAAAGTAATATCCTCTGGTGTCGAGTGCTTAGATATCCTTATATG
ATTAAATATTTGGTCCTTTGAGTTTGTTTAGAAAGATTTCACCATTTACG
GACCTTCCAATTAAAGAATTAACACTTTATTTTAGGGACTTTAAATGTGT
CTGATAAACGCCTGTGAGTTTTTGAATTTGTTTAAACTTTTGCCAAAACC
TTTTCTAACTTTATCTTTAAGCAACCGTTTCTTCGGGATGGTGACTTAGA
GATCTTCTCGACATCTTAAATACAATTCATTATCGCCTAGTCGTTTCCCA
GGCGTTAAATTTTAGTTCAGTTTTTGTTTGGCTGCTTCAAAATTCAGAAT
TTTCTACTATTCGTTTATGAAAATATGGACTACAGCACCATCCGTTTTTT
GTATTTTCTTAAAAAATTTTAAATTCAAAATCGTTTACAGGCTCATACTT
ACTTCCTCTTTGTTTTCTCTGAGATAACTGGACTTTATTACAAGCTCGTG
ATTCTATTGGATAATCAACAAACAGAATCTGAATCTTTCCAAGCACAAGA
GACCTTAGAGAAAGGTTCTGAGTAAACAGTCTTGAAACACAAAATCTTTT
AAAAGAACCCGAACTGTTAAAATGATTTTATTTATGCATTTCTGGGGATT
GGAGAACTAGAATGGAAAGAATAGCAGAACTTTACGAATTTATAGATATA
ATTGGAGGTGGAAAACAGAGTTCAAAGACTAAACGCAAAGCAAGTTTGTT
AATAAAGTCAAGTCCATCCATAACTTGAACGCGCACGTTGGGGGTCCTTC
AAAGTTCCTCAGAGTGCCGTCAAAAACCGGCAAAAATTGCCAGAAATGAC
CTCCTCAATTGGGAACACAAACTTGTTTGAATTAAGGAAATTTTGAGTTA
TGGAGTAGGCTCACAAGGCATTTTTAAGAAAAATTATTCGAGTTATCGAG
CCATTCGAATTAACTGGTTAATTAATTGGTTTTGCAACAAAAGGCGCGTC
ATAACAGAGGCTCGAATAATGGAGACTCCACTGTAACAGAAATCTAAAAT
CTTACAAAACTTACTACATTATTTTTTGAATTTTGTATGTATTTAGGTGA
CCCAACCCTTTTTGTTTTTTAAACAGTTTAGACAGAGGCTTGCTGTTAAA
ACTGACATAACATGCATAATTAACTGAAGTCTGATAAAAGTTCCTTAAAA
AGTAGGCCTAAAACGGCCAAAAGTGACTAAAAACAATGCTGTAATTTTTT
ATCGAACTATACGAAAAATCTGAACACAGATTTGAAATCAGCAAGGTTCA
CAGTAGAAAAAATCTTCATTTTTTAAAAACTTCTATCTATTCGGTTATTC
TTCTTGGTAATATCTTTCCAACGGTGTATAGCTTTTTTGTACGTATAGAA
TGAATACCTACTGCAAAATTGTTAAAAAGTAAAATGTCCACATACTTTTG
AGACAGGCTTAGACGATGCTATCGTCCCTTTAAAGGTCAGTAAACGCGGG
AAAAAGTTCGGGCGTCAGGGCGGTTTACGGGAAAAAAGTGGCGGTAGAGT
TTTGGAACACTGTAAACATCTCCGCCACTGCTTACTCCACCCAAATTTAT
CACGCCTCTCCTAAACTATTCCCTTTTTTAGTGATCGATAGGATCGTCTA
AGACAGACTTTAATTGAATCTTTCAATCTTCATTTTCTTCAGAAATCGTA
TTCGACAAACACACTGACACGAGCTGATTCTACCGAAGAAGAAAATGAAT
GCAAAACTTATGAAGGTTGGTTGTTTTCAGAGGATATACACGTTTTTTTT
GAATTAGAATAAATTGTATAAGAACATAAGGCTCGATGGTCAAAATAATT
GGAACAAAACAAGATCATTCTAACCCTTCGAGCTTCTTCCTATTTTTTTA
CTAGGGGAAGCATATTGCCCCCCCCCCCTTAAAATCTGAAGAACGACAAG
TGCTATGAACTTGAAATTTTGACCAGTGGTAGATATGGATTATTGGAGCT
TTTTTAACCAGGCATCGAGAATAGTTCGCCATTTGGCTATTAAATTCAAA
ATTTAATGAATCTGCGATCATGTCAGATTTTTATAAGAACAAACTGTTAG
AAATGAAATGCTCAGAAATGCTCAGAACTAGCTAAGAACATTTTGAGGCT
TAGCGCATTTTTAAACACCCAAGTTCTTTAATAGGCCCAGAAATACTCAC
AACATGGTGAACATAAGAACATTTTAAGAACATTTTAAGCTTAAAGTTTA
AAAGTTACGAACATTCGAAGGCTACAAAAATTTTGGACGTTCTTATAGAA
AAAAATTATTTACAAGTTTCAAAAAGGGATCCTAACAAGTCAAGGCAAGT
CCTTCGACTTAAATTTTACTAGAGTCAGTCCCACCATTTGTGCGAGTTTA
GAAACTGATACAAATTGTCATACCGCGAACACCTTATTTTAGCTCCCTCT
GAAATTTAACCTGTGGCGACCTACTATTAGAATTTTATCGCGCATGTCTC
AATTATATTGCTTTTTAGCCTCGATTTCCAGACCATTATTCTTATTACGC
AAAATAGGGGCAATGTCTGCCATAAAAAAAACCGCGCGAGAGAGTGTTTT
GAATATTTTTTCCTCTTTTGAAGAGCCCACTTCTTTTTTGCAGTACGGTG
TACCTTTTAGTGTTTGATAATTAGGTGAAGCTGATTATTGACCTGGAATT
ATAAATTATTAGTCTAGATCTAGACTAATTACTATTCAAAAATTCGAAGG
TGGAGAGTATATCCATGTTAAGCTTGAACGACTTCCGGGGGGGGGGGACT
AGGTTTGCAATGTCCGAGTCAAAATTTGAAAATCGACCCATAGAGAGACA
GAATTTTTCCACAAAATTTCAGCCAAAATTTTTAAATTGTAGACCAATTT
TCAAGAACTTATGACCCTTTGAGGGAGTCGATTTTTGATCAGAGACTGAA
TTGCTTTTTAATGATTTTCGTACCCCTTTGAGTGTGTGAAAAAGGGACCC
TTATTTCCCGGAACGACTTAAACAGACTATATGTAATTACATATTTCCAG
TTTTAAAATTCTTCTGGGACTTATATCAGTGAAATGAAATCTCCTTTCTA
TCAGCCAAAATTTACGTGACAATGATTACCAATTCATTATCAAATTATCA
ATTCCCCGAAGTTACTTTAATATCGATTCCTAATTATGTTTTGAGCTAGT
TGTCTTTCATTGAATCTTTTCTACGTTTCTAACTCGTGATTTGATTGGTA
AGGCTTCATTCAAGATTCTGGCTAATTGCCATGACTACTAAGAACATCTT
TTTGAGTTTTTAGCCTAAAAATGTTCTTATCGTGTTCTTATTTTCACCAT
TTTGTAAGAATTTTTGTCCCACTTCCTAAGAAATTGGGTTATTTAGAGTA
CGTAAAGCCTTGTGGTCAATATTTCGGTCATCGAATCCTTATGTTCTTAT
ATAGTTTGATCTTATAGATAAAACGTGTAGAATAGAATCCTTATTTGTCG
TCACAGTGTAATATTCATACACTGTGACACTCCTCACTAGTAGCCTGGTA
GACAAAAACCGCTTTTTTATCGTGATTTAAAACAAAGAAAAATTTGGTTT
GTGGGAAGGCACTGGCTAACTCACTAGTGAATCTACTTTTACGTAAAGTT
TTTTTACAACCGTCTTTTCCTTGGCAAGATCCCGTAAAACTTGACCTGCT
ACAATCATATGTGTGTTCTTGTACAGAAATTCGATATTCTGATGGAAACT
CCTTGAAAAAACACTCTAGAAATCAAACAAACTTACCAATATCAGAATCA
CAAGAGGTCTAGATCAATAATGTCATTTTTTGGCCGAAGGGCCAACAAAA
AAAAGCTCATTACAATTTTCAGACAGAGAGGTTGAACAAGAATTTGTCAT
AATCATAGTTTTGGAGTTGAAGTTTGTGTTTGGTAATATCGGATTTCCGG
ATTTTTCTTTTTTTCTTAGAATCGTTTTTTGTGGTTCGAGAATTTTTATA
CCTCGTGATAATCGTATCACTTGCCAAAATTTCTTATTAACCTAGGGTGT
ATTCACTTGAAGTTTGCTTAAAATACAATCACGTGATCGTGCAAACTTAG
ACAATAAGAGACAAAGGTGAAGTTTGTGCAATTCTTTGTTCCCATATTTT
CAAAACTTCAAGCAACAGTGTACACCCCTATTTCAGAAGGTGTTATTTTC
GATTTTTCGATTTTCTCCTGTGTTGCTGTTGTTTTTGTTGAGAAATGAAA
TTATTTTTTTCAAAAAAACGTAAGCGTGTAGCCCATCTTTTTTCAGCCGC
AATTTATATGAATAGTTTTAGGCTATTCAGCGTTATACATTAATCCTATT
AATCCTGTTAACCTAAGCCGTCAGTGGAAAAACACCCATAGGATTCGTGT
ATCTGTTACATGCTATTTTCTATTCAATTTAAAGGGGAAATTGCATGATG
TGTGCAGATTTCCCTTCGAAAAAAACATTGAAAAAAATTGATTTCCATTA
TTTAAATGATTTTGGGATTCATGAACTCTTCTCTATTGCTAACGTAGAAA
AATATCATGTTGAAATAGGCTAATATTGAAAATGGACTTTTTCTCCCCTC
ATAGGTATCACATTATGCGTGTATCGTCTGGAACCAGAAATCACGAAAGA
ACAGTTGAAAGAAGTCTTCTCTAAATTCGGACACGTTTTAAAATGTACCG
TAACAGAAGAATGTTCCGGACCTCTACCCTACCGCATCGGAAGCATCGCG
TATTATTCCCCACTAGAAGCACAACAAGCTATTCGATATATGAACGGTAA
AGCTATCATTCAAAACAACATTTATGTTGGTTTACAGACACGGAAAAAAG
AGAGGCGACGATCATCAAGAACTAGCCCGCCACCTTCGGCATTGCTTCTC
CCGCCCCCGAAAGAGGGCGCTGAAATTGAAAATCGGACTGAAAGATCTTT
TAGTGAATCAGTAACGACAAGTGGTAGTGGTGGTCAGAGTGTGGGTGAAA
AATTGATTCAATTTAAAAGACTTTGTCGCACGAGGTCGTTGAACACCAGT
GCTTTGGATACTCACTCTTAATTCAAATATTTTTTAAACATACAGTGTGT
CATGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012179-exon-sc0000141-1575043694:15141..15162 | TCONS_00012179-exon-sc0000141-1575043694:15141..15162 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1575043694:11898..11970 | TCONS_00012179-exon-sc0000141-1575043694:11898..11970 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1575043694:8554..9058 | TCONS_00012179-exon-sc0000141-1575043694:8554..9058 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1510915933:15141..15162 | TCONS_00012179-exon-sc0000141-1510915933:15141..15162 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1510915933:11898..11970 | TCONS_00012179-exon-sc0000141-1510915933:11898..11970 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1510915933:8554..9058 | TCONS_00012179-exon-sc0000141-1510915933:8554..9058 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1491911889:15141..15162 | TCONS_00012179-exon-sc0000141-1491911889:15141..15162 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1491911889:11898..11970 | TCONS_00012179-exon-sc0000141-1491911889:11898..11970 | Clytia hemisphaerica | exon |
| TCONS_00012179-exon-sc0000141-1491911889:8554..9058 | TCONS_00012179-exon-sc0000141-1491911889:8554..9058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:8554..15162 - |
Blast
The following BLAST results are available for this feature:
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