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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012177 ID=TCONS_00012177|Name=TCONS_00012177|organism=Clytia hemisphaerica|type=transcript|length=255bp
NTCTTTATCTACCATTCAGTTATGTTtttcagCTTCATTCACTGTTGTTA
AAGAGCCTTCAGGATCTGTATTCCCTTTGGAAGGAAGCAAACTCACTGTC
AAATGTATTGTCACTGGAGTAGATAAGCTACCAAATGCCACTTTCCGAGA
CAGAAATAACAATGCGGTTGAAGGCAGTACTGATGGGCATAGAACATTCA
TAAAAGACATTGGTAAGACTTTTaacctattcatactaggcttttagggg
cagTT Run BLAST on NCBI transcript from alignment at sc0000141:543696..552012+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012177 ID=TCONS_00012177|Name=TCONS_00012177|organism=Clytia hemisphaerica|type=transcript|length=8317bp|location=Sequence derived from alignment at sc0000141:543696..552012+ (Clytia hemisphaerica)
NTCTTTATCTACCATTCAGTTATGTTGTAAGTATTTTAGTTTTATATCTA
GCCCATAAAATTTATGTTCTTATCATTTCCaagataaaagaaaatctatc
tcttgataaattaataaatgaactattccatttttaaacctaTGCTCTAT
AAGCTTGGATTTTCCAATgggtttttatttgtttttatttttttcaatgg
gGTCATAAATTAGAAGGAGCTCAAAGCTTTACATCAACCAGTAGCTACTT
TTAGCAGTCTTTGGCAAATGTTTTCAACAAATTCAACAACAACATAAAAT
GTTTGACAAAATTGTTCGATAGTACAACAAATTGACGAAAGTTTCGTTTG
ACAACAGACAGCTTTGACAAAATTTCGCTGCAATCGCACCTTTTGCTTGG
GCTTTACTCATTTTTGCTCGGGAAAAAGATTAAGTCAAAAtgcttcattt
tcctttttttcttttgacaaaTATCGTGCaagctttgcttgaaaaagccc
gATTAAATTACGCACAAGTGAAGCGACCTTCAGTTGCTtgggttttctca
aatttttgttcgattaaacttgaaaagttcgattaagttcgattaatgta
atcaaactaatcaaactaaTTGAGGTGTAGGGTGTATGATGAAATggcaa
aaattgactttttttctggaaatgttATTTGGACAACTTTTTCTGGTAAT
TTAATCTATTTGAAGACTTTCTgcgaaaaaattaattcaaaatcttcaaa
attgaccGTTTGCCCCAGGGTTTTGTAAAatcgatattttcaaaaatttg
cgaaaaacagggtttttgcctgaaagaAAATCCTAAAACCAgctgtgttg
gtgctacagccctgaaattgggcttaaaatgttccttggaaaaaagtagg
attagaatgtaacaatgatatagctctatcatacatgaaaattattaaaa
gtaggtttttaggccaaaaatgaccgaaaacgcgaaaaaatggggttttg
cctgaaaaaaatcctaaatcttgctgtgttggtgctacagccctgaaatt
gggcccaaaatgttccttggagaaaagaaggattagaatgtaacattgat
atagctctatcatatataaaaattacaaaaaatgtaggtttttaggccaa
aaatgaccgaaaacacgaaaaaatggggttttgcctgagaaaaaatccta
aaacctgctgtgttGGTACTACAGCCCTCAAATTGGGCCCATAATGCTCC
TTgggaaaaagtaggattagaatatAACAATAATATAGCTCTATCGtata
taaaaattacaaaataatgtAACCATATATAGAAACTCTGTAGTCCCATC
AAACCTTGCTTAGAAATAAGCAAGTTCAGCACTCACAGACTTATTATCTT
TGAGATGACAAATGTTGATTTAGTGGGAAAcattttctgatttctttttt
ctttttgctaagattttttagttctttcagtTCCAATGTACGCTTTGTTA
AGATTTGCGATTAAGAATGAGTTTTGAGattcataatttttagaaattag
cttgttattttaacagttcaaatagttttctTTCATTATGCCAAGTTTCA
AGGTCTTGAATTGAGCCTTTAAAagttatgaaagctcaaaaatcgctatt
ttgggggtatttttgataaaaaatcccTTATAAACCcaaatttttgctca
aatttgcCATTAGGATAGCTTATTGTACTAGATTATATATAATGAAACAT
CTATATTTTAtcactttaaagcacttaagaGTATCAGAAATTGATTCAAT
ATGCTTTAATTAAGCACTGAAAATCccgattttgagtaattttcgcCTTT
TTCGGTTAATTTTGACCTAAAAACctattattttgtaatttttatatatc
atagAGCTATATTATTGTGatattctaatcctactttttcccAAGGAGCA
TTATGGGCCCAATTTGAGGGCTGTAGTACCaacacagcaggttttaggat
tttttctcaggcaaaaccccattttttcgcgttttcggtcatttttggcc
taaaaacctaCATTATCTGTAATTTTTATATATGATAGAGCTATatcatt
gttacattctaatcctacttttttccaaggagCATTTTGGGCCTAATTTC
AGGGctgtagcaccaacacagcaggatttaggattttttttaggCAAAAC
CCCATTTTTTCGCGTTTTCTgtcatttttggcctaaaaacctacttttaa
taattttcatgtatgatagagctatatcattgttacattctaatcctact
tttttccaaggaacattttaggCCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCAAGGAACATTTTAGGCCCAATTTCAGGGctg
tagcaccaacacagctggttttaggattttttttcaggcaaaaaccctgt
tttttgcaaatttttgaaaatagcgattttacaaaacccTGGGGCAAACg
gtcaattttgaagattttgaattaattttttcacagaaAGTCTTAGAATA
GATTAAATTACCAGAAAAAGTTGTCCAAAGTACAATTCtgaaaaaaagtc
atttcaTCATACAcggtctctttaaaaaaagttcgattaagttcgattta
aAATACTActcgattgattcaattaatGATAGGtagatttttaacgtttt
tgagcactttcagaaagtaacttttttattgaattgagcatatcttttga
tctaatgaagcaaatttaataaaatgacccatcaaaatttaattttattt
ttcttctttccaatgaaataggcatggttcttttaaagtctttagatttc
gagaaaatcagtttcaaagagcaaaacttttttgtggctcACCCGGTAGA
AGAATTTGCAAAGATGAGCGGTTAGAGGCCCTGTGCCTAACTGTATAGAT
TAGATTGTTTAGTAGAGGTCAATTAGACCTGTGAAATACACATCTGTAAA
TTAAATATACTGTAGTTTTACTTTTGATTCACATATGTAAAAAGCAATAT
GTAGCTACAAGTAAAATTATTATATGCTGTTTCTTGCATTTTTATTCAGA
AAATAAGAGCTAAAAATGTCAAAGTgtcttaggaccattgggaaccagct
cagccctgtatggagctcagaataagcttaactaagggtcTACTTGTGTA
GTTGTTTGAGCATCCTGCTTCAGGTAAGGTTCTTGGTGAACCACGCCTCT
GTGTGAACAATCTGTTGAGAGAAAAAGAATCTcagcagatatttttcatg
tcaattATTGAATTTGAGTTAGCTCTCCTGCACCCAGTATATCCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTTTTTGAGGTTTCTGATGCTCTTTGGC
ATAGCATTAAAAAGTTTTGCACCTTGCACTGCAAGTGTGCTGTctctaaa
ttttgatgtttggttctTTGGAATTTACAGTGTACACATCCGGCCCAGCC
GGGGGTTTTCAGTGGTTTTGATACCTTTTATAGTAGGTACAATCTTTTCC
ATCACCTTCCAGACATACATTATTCTGTAGCGTTCTCTTTGCCTTTGAAG
TGAGTAAATCTTTGTCTGTTTTAGACACTCCCAATAATTGTTTGGGGTGC
CATTTATCTTTCGTAAGAACGACTTTTGAATATCTTCAAGTCTCTGAATG
AGACCAACTGCATTTGGGCTCCACAGAACGGAGCAATATTCTAATATTGG
TATCACCAATGATTTATATAGTACGATCATACAATTTAAAGATCATGAAG
AAAAAGTTCTCAGGATCCAAGATGTtaagttttagctttttcgATTACTG
TAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATCAGGATTCCAAGG
TCTTTCACAACAGCTTTGTTTTCAATCTCAACACCAGACGGTGATGTATA
GCTTGTTTAAGTCTTGATCTCATGGTTCTTTCCATAGTGCAAGagttcaa
attttatatcatttagCTTCATATTGTTGTCATCCACGGGTCCGTTTATA
TATTCTATCAAGATCATTTTGAAGTAGGACAGCATCTTCTAGAGTTTTGA
CTTCCTTTGTGGCGCGAGTGTCATCAGCGAAGGATTTGAGAAAGCTGTGC
ACCACTTCCTTGTCAATATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAGAAGTGACACCATTCACTAGCACTGATTGTTTTCTCTCTGTTA
GGAAGGACTTTAGCCACTGTAATAATTTTCCATCTATTcctagtttcttt
atttttagtaGGACAATTGATTGGTCTACTTtgtcaaaagcctttgaaaa
atctaggtACACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTA
TCAGGTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAGTATAACCTTCTACTTTTAGTTCTGCATCTTTATGGTTGTTGAGCC
ATGTTTCTGATAGGCCAACAAACAGTAAACTTTTATGACATatgttattt
tcaataaaaggaACTTTGCTTGGTACAGTTTGCGGGCACAGTCCTTGTAC
GTTAAAAAAAGCAAAGTTGTTGATTATTGGAACTGGTGATGAATTTGCCT
GATCATCGGTGCAGTTGGCATAGGAAACTGGGGTATTTGAGAGGTTTGCG
TCTGCTGAAGGTGATGAAAATGATTCTCGATCGAGGTGATCTTTTTGTCC
AGTGTCTCCATGATTTCTTCCTTCATCAGACGGACAATCTCTAAAAAATG
ATCTGGTTCAGAGGATCTGatctcatcatttttttctgccAATAGCTTGC
TGTTGTTGTGAGTTACTGTGTTTTTAACCATAATGGGTTCTCTTCTGGTT
CCCTTCACATGAACAAAACGGCAGGATGTTGCGAAACATTCTCCTTTTCA
TATTGAGTCGAAGCACATTTTGGGATGGAaatctttacatttttttccat
tctttttccttttattgTCACCGTCTCTGTCACTTGGGATTGTGTTAGGT
TGACAAGCATGACAAATGTAGAACATACCAGGTAGATTTAGAGGGTTATA
CAAGCTTTTGAAGAGTTCAGCGTCGGTGTCCTCATCAATATTGGTGTTGT
TTGTGGGAATTGTAGCAAGATTTAACCAACATGGTTTGTGTACACCTTGA
CCACAAACGGCACATTCAGGGGTCGGGAGCTCCATAAGACCAATTTTATA
TCTTCTGTTGCAGATGAAGCAATTATCCGGTAAGAGGTTTTGTATCTTGC
AGATGATCAGATGAGACAATGATCTTTTggttttttcattatattttgcg
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTCATTTTCAATAT
CTAGTACACTTTTGCCATATTGATACTTCCGCAAACAGAATTTTACAGAA
TCCAAGGAGGCATAAAAGCAAAGTTCTGCTATTAGATCCACAGTTTCCAA
TTCTTTGGTACATTTTTGGGACTTATCACCCTCAGGGGAATTATCACTTT
GATCCATGATAAATGGAGTACAGGAGAgtataaaagcaaaagtaatTGAG
AAATGTACTTCCTTTATTGTATTACAATGAAGAATCTTGTCACATTTGTA
AATAGTATTAGTCACTTAGCTGAATGACTGCACTGTGGGATGAGTGCAGC
CTGATGTTGAAGCGTCAGAGTTTATTCAATGAGGTGGTCTTCAGACTTTA
CATACAAACAAGCCAAGGCAGGCAGGATTGATTGTTGTTGATATCCACCA
GTTGTAGCTCGCCAAACATTTGATTTTGACTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCAGTTGTAGCTCGCCAAA
catttgattttgactttttcttctgtaatttttccttttaatttttattt
ttcactgaaaaataCTGGCCTCTCCCAAAATGAAATCAAACAGATTCCTT
GCTTGTGTTCAGATGATGTTCTGGGTGCAATATCCAATAAACCATCCAAC
TCAACATTCAACTGGTGGACATTTGATCGATTTGATTGCTTATAGATTAT
TTAAATGCTTATGTGGTTTTCATTaccaatttttttagtttcagCTTCAT
TCACTGTTGTTAAAGAGCCTTCAGGATCTGTATTCCCTTTGGAAGGAAGC
AAACTCACTGTCAAATGTATTGTCACTGGAGTAGATAAGCTACCAAATGC
CACTTTCCGAGACAGAAATAACAATGCGGTTGAAGGCAGTACTGATGGGC
ATAGAACATTCATAAAAGACATTGGTAAGACTTTTaacctattcatacta
ggcttttaggggcagTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012177-exon-sc0000141-1491911889:543696..543721 | TCONS_00012177-exon-sc0000141-1491911889:543696..543721 | Clytia hemisphaerica | exon |
| TCONS_00012177-exon-sc0000141-1510915933:543696..543721 | TCONS_00012177-exon-sc0000141-1510915933:543696..543721 | Clytia hemisphaerica | exon |
| TCONS_00012177-exon-sc0000141-1575043694:543696..543721 | TCONS_00012177-exon-sc0000141-1575043694:543696..543721 | Clytia hemisphaerica | exon |
| TCONS_00012177-exon-sc0000141-1491911889:551784..552012 | TCONS_00012177-exon-sc0000141-1491911889:551784..552012 | Clytia hemisphaerica | exon |
| TCONS_00012177-exon-sc0000141-1510915933:551784..552012 | TCONS_00012177-exon-sc0000141-1510915933:551784..552012 | Clytia hemisphaerica | exon |
| TCONS_00012177-exon-sc0000141-1575043694:551784..552012 | TCONS_00012177-exon-sc0000141-1575043694:551784..552012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:543696..552012 + |
Blast
The following BLAST results are available for this feature:
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