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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012172 ID=TCONS_00012172|Name=TCONS_00012172|organism=Clytia hemisphaerica|type=transcript|length=2083bpRun BLAST on NCBI protein sequence of TCONS_00012172-protein >TCONS_00012172-protein ID=TCONS_00012172-protein|Name=TCONS_00012172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp MNGEGTLRHFSGLVYCGLWTNDRPLFEPALMQVEDITDDVIYVDQNDVIFRun BLAST on NCBI transcript from alignment at sc0000141:329438..347548+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012172 ID=TCONS_00012172|Name=TCONS_00012172|organism=Clytia hemisphaerica|type=transcript|length=18111bp|location=Sequence derived from alignment at sc0000141:329438..347548+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000141:329438..347548+ >TCONS_00012172 ID=TCONS_00012172|Name=TCONS_00012172|organism=Clytia hemisphaerica|type=CDS|length=8520bp|location=Sequence derived from alignment at sc0000141:329438..347548+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012172 vs. Swiss-Prot (Human)
Match: MORN1 (MORN repeat-containing protein 1 OS=Homo sapiens GN=MORN1 PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 5.600e-43 Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 2
Query: 218 DGYGTYTYENSFFRFEGEWKEGLKNGFGKFKMRDGSYYEGEFNEGEIHGTGTRYWSHNQNVYEGQFDQGEMNGMGVMKFGNGDQYEGQWADNKMQGEGTFKYANGDVYKGSFYKHKRHGEG 580
+GYG Y Y NSFFR+EGEWK G K+G GK +DGSYYEG F +GEI G G R+W+ + + + GQF GE G GVM++ G YEG+ + +G G +G VY+GSF+ +KRHG G
Sbjct: 25 NGYGVYVYPNSFFRYEGEWKAGRKHGHGKLLFKDGSYYEGAFVDGEITGEGRRHWAWSGDTFSGQFVLGEPQGYGVMEYKAGGCYEGEVSHGMREGHGFLVDRDGQVYQGSFHDNKRHGPG 145 HSP 2 Score: 74.7146 bits (182), Expect = 5.600e-43 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 592 GQWKADLMNGEGTLRHFSGLVYCGLWTNDRPLFEPALMQVEDITDDVIYVDQNDVIFSLDVRCLTEDGDVV-TESGRVLKITAGIRFQEXXXXXXXXXXXXXHNTLTVEESENSEVEKRDTPFGFQVAPYPI 984
GQW +D+ +G G++ H SG+ Y GLW N P + + + + +V+ V Q FS++V+ L + G++ +ESGRVL+I+AG+R+ + S + N V+ +N E + TPFGF+ PYP+
Sbjct: 180 GQWHSDVFSGLGSMAHCSGVTYYGLWINGHPAEQATRIVI--LGPEVMEVAQGSP-FSVNVQLLQDHGEIAKSESGRVLQISAGVRYVQLSAYSEV-------NFFKVDR-DNQETLIQ-TPFGFECIPYPV 299 The following BLAST results are available for this feature:
BLAST of TCONS_00012172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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