TCONS_00012171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012171
Unique NameTCONS_00012171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012171 ID=TCONS_00012171|Name=TCONS_00012171|organism=Clytia hemisphaerica|type=transcript|length=850bp
ATGCACGATTGACACACTAGACTATCGGCGACATGGTCTACAAACTGGCG
ACACAATTCTCTTACGGGAAATCAAGGGTATGGACACACTGAACGAAACT
ACACACAAGATCAAATACATTTCAACAAGTTCGTTTAGTATAGAACTCGA
TACAGCAGGTAGTGAATATGGACCTTACACTCATGGTGGCGTGCTTAAGA
AAATTAAACAACCTACCACTATAGAGTTCGGATCTTTGGAAGACCAATTA
AAAACAGCAGACGTTGTGGTCAACGATTTATCGAAACTAGATGCACCTAT
ATTGAGTTTGATTGCTCTATCTacacttttaaaaaataaagacaCTTTAA
CCTCATTAAGTTCAaatgaaaagttatttttaaacgAATGTCGAAAAGTA
AATTCACAATTATCCAACCCCTCAGAGAGTTTAAATGAAGATTACTTGAA
GTGTTTATACAGGACTTGCAAAGGAAAATTAGCGCCGCTCTGTGCAGCCA
TCGGTGGTATTTGTGCACAAGAAGTGTTGAAAGGACTTTCAGGAAAGTTC
AGTCCGTTGAAACAATGGTTGTTTTTGGATGGTGTGGAAGTTTGTGGTGA
TTCTCAAAGATGCCAGGGTGAAGGTGAGTTTCATTACACCCTTTTTTATA
TATGTATAACATAAAAGCGACCATAGcataaaggtagagcatccagctac
gatgcgcaaggttgtgggttcgatccccagctgggtcataccaaagattc
ccgaaagggtacttgatgcctctctgcttgatgctcagcaactaaagaga
cggatcaagggtaagtgaagAAATctagggaaaggagtggcgccctcccc
Run BLAST on NCBI

transcript from alignment at sc0000141:304119..304968+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012171 ID=TCONS_00012171|Name=TCONS_00012171|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0000141:304119..304968+ (Clytia hemisphaerica)
ATGCACGATTGACACACTAGACTATCGGCGACATGGTCTACAAACTGGCG
ACACAATTCTCTTACGGGAAATCAAGGGTATGGACACACTGAACGAAACT
ACACACAAGATCAAATACATTTCAACAAGTTCGTTTAGTATAGAACTCGA
TACAGCAGGTAGTGAATATGGACCTTACACTCATGGTGGCGTGCTTAAGA
AAATTAAACAACCTACCACTATAGAGTTCGGATCTTTGGAAGACCAATTA
AAAACAGCAGACGTTGTGGTCAACGATTTATCGAAACTAGATGCACCTAT
ATTGAGTTTGATTGCTCTATCTacacttttaaaaaataaagacaCTTTAA
CCTCATTAAGTTCAaatgaaaagttatttttaaacgAATGTCGAAAAGTA
AATTCACAATTATCCAACCCCTCAGAGAGTTTAAATGAAGATTACTTGAA
GTGTTTATACAGGACTTGCAAAGGAAAATTAGCGCCGCTCTGTGCAGCCA
TCGGTGGTATTTGTGCACAAGAAGTGTTGAAAGGACTTTCAGGAAAGTTC
AGTCCGTTGAAACAATGGTTGTTTTTGGATGGTGTGGAAGTTTGTGGTGA
TTCTCAAAGATGCCAGGGTGAAGGTGAGTTTCATTACACCCTTTTTTATA
TATGTATAACATAAAAGCGACCATAGcataaaggtagagcatccagctac
gatgcgcaaggttgtgggttcgatccccagctgggtcataccaaagattc
ccgaaagggtacttgatgcctctctgcttgatgctcagcaactaaagaga
cggatcaagggtaagtgaagAAATctagggaaaggagtggcgccctcccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006849XLOC_006849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012171-exon-sc0000141-1491911889:304119..304968TCONS_00012171-exon-sc0000141-1491911889:304119..304968Clytia hemisphaericaexon
TCONS_00012171-exon-sc0000141-1510915933:304119..304968TCONS_00012171-exon-sc0000141-1510915933:304119..304968Clytia hemisphaericaexon
TCONS_00012171-exon-sc0000141-1575043694:304119..304968TCONS_00012171-exon-sc0000141-1575043694:304119..304968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:304119..304968 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.651634	0	1.65285	1.43237	0.300485	0.327953	0.110157	0	0.346425	0.218357	1.37	0.132632	0.389183	0.409731	0.0997693	0.124026	0.132216	0.0944144	0.698779	0.174423	0.324169	0	0	0	1.25534	0.999198	0.225018	0.497982	0	0.312536
Blast
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BLAST of TCONS_00012171 vs. Swiss-Prot (Human)
Match: UBA6 (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.175e-30
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 2 
Query:   17 LDYRRHGLQTGDTILLREIKGMDTLNETTHKIKYISTSSFSIELDTAGSEYGPYTHGGVLKKIKQPTTIEFGSLEDQLKTADVVVNDLSKLDAP------ILSLIALSTLLKNKDTLTSLSSNEKLFLNECRKVNSQLSNPSES---LNEDYLKCLYRTCKGKLAPLCAAIGGICAQEVLKGLSGKFSPLKQWLFLDGVEV 592
            L+   H L+TG  +  REI GM  LN +  +I  IS  SFSI  DT  +E  PY HGG+  ++K P T+ F SLE QLK    ++ D S  +AP      +L+L         K  +     +E+L      K+ + +S   E    +N D +  L  T +G L+PL AA+GG+ +QEVLK ++GKFSPL QWL+L+  ++
Sbjct:  232 LENHPHKLETGQFLTFREINGMTGLNGSIQQITVISPFSFSIG-DT--TELEPYLHGGIAVQVKTPKTVFFESLERQLKHPKCLIVDFSNPEAPLEIHTAMLALDQFQEKYSRKPNVGCQQDSEELL-----KLATSISETLEEKPDVNADIVHWLSWTAQGFLSPLAAAVGGVASQEVLKAVTGKFSPLCQWLYLEAADI 424
The following BLAST results are available for this feature:
BLAST of TCONS_00012171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBA66.175e-3037.81Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
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