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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012166 ID=TCONS_00012166|Name=TCONS_00012166|organism=Clytia hemisphaerica|type=transcript|length=3925bpRun BLAST on NCBI protein sequence of TCONS_00012166-protein >TCONS_00012166-protein ID=TCONS_00012166-protein|Name=TCONS_00012166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1002bp MGEPMEIDDSLYSRQRYVLGDGAMHKLSKANVLIIGLGGVGVEVAKNVILRun BLAST on NCBI transcript from alignment at sc0000141:279707..328658+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012166 ID=TCONS_00012166|Name=TCONS_00012166|organism=Clytia hemisphaerica|type=transcript|length=48952bp|location=Sequence derived from alignment at sc0000141:279707..328658+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000141:279707..328658+ >TCONS_00012166 ID=TCONS_00012166|Name=TCONS_00012166|organism=Clytia hemisphaerica|type=CDS|length=75225bp|location=Sequence derived from alignment at sc0000141:279707..328658+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012166 vs. Swiss-Prot (Human)
Match: UBA6 (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1) HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0 Identity = 502/1004 (50.00%), Postives = 674/1004 (67.13%), Query Frame = 1
Query: 79 MEIDDSLYSRQRYVLGDGAMHKLSKANXXXXXXXXXXXXXAKNVILAGVKSVTLLDNTKCTMNDLGTQFFLRESDV--DKPRAASCCQRLAELNPYVNVTIIEDDLN--TNINVLKDFQCVVVTECTFDEQIKYNDFCRNQQPTTPFISCDVIGAFSYLFCDFGPQFVVHDSDGEEYKEVFLGNISKSNPCTIDTLDYRRHGLQTGDTILLREIKGMDTLNETTHKIKYISTSSFSIELDTAGSEYGPYTHGGVLKKIKQPTTIEFGSLEDQLKTADVVVNDLSKLDAPI------LSLIALSTLLKNKDTLTSLSSNEKLFLNECRKVNSQLSNPSES---LNEDYLKCLYRTCKGKLAPLCAAIGGICAQEVLKGLSGKFSPLKQWLFLDGVEVCGDSQRCQGE------GKYSQLLNCISKDLFIKLQNTRLFMVGCGAIGCEMLKNYALLGISGGQD-GRITITDNDLIEKSNLNRQFLFRPWHIQKPKSLTASEAAREINADLQIEAHQNKVSPDTEFSTYNDAFYKSQNVVVNALDNVEARRYVDSRCVTNQLPLLETGTMGPKGHVQVVVPFKTESYSDQRDPVDEDVPYCTLKSFPQIIEHTIQWARDKFEKLFNLKPTTYNKFWETHGTPDTFKQTLSSSIP-DGFVDTISLLQKKPSDWSECVSSARIKFEKYFKHMALFLLHAFPLDTIMPDGALFWQSPKRPPTPIEFNASDAEHMTFVLSCARLTANLHGIKVTEDDTKAECVLSILQNTQVPEFVPKNXXXXXXXXXXXXXXXXPQDNDE-DKITKLTNFL----KFSSNLQAGHLEVEHFEKDNDSNGHIDFITSASNLRATMYNIPTADRFKTKXXXXXXXXXXXXXXXXXXXLASLELIKVIAGSPLEKLKNCFLNLALPMMVLSEPGAPPKTKIKDGLEFTMWDRWVVKGNANYKLQDFINHFKKTHDLTVSMVCEGVKMIYMPIMPGHLKRPKELMTKLLKPKAGVEYTDLIIGF 3012
+EIDD+LYSRQRYVLGD AM K++K++V + G+GG+G+E+AKN++LAG+K+VT+ D KC DLGT FFL E DV + RA + + +AELNPYV+VT N T+++ L +QCVV+TE Q K NDFCR+Q P FIS DV G +S LFCDFG +F V D+ GEE KE+F+ NI+++NP + L+ H L+TG + REI GM LN + +I IS SFSI DT +E PY HGG+ ++K P T+ F SLE QLK ++ D S +AP+ L+L K + +E+L K+ + +S E +N D + L T +G L+PL AA+GG+ +QEVLK ++GKFSPL QWL+L+ ++ + + E +Y L CI L KLQN +F+VGCGAIGCEMLKN+ALLG+ ++ G IT+TD DLIEKSNLNRQFLFRP HIQKPKS TA++A +IN+ ++I+AH NKV P TE + YND FY Q+V++ ALDNVEARRYVDSRC+ N PLL++GTMG KGH +V+VP TESY+ RDP +E++P+CTLKSFP IEHTIQWARDKFE F+ KP+ +NKFW+T+ + + Q + S +G I LL ++P +WS+CV AR+KFEKYF H AL LLH FPLD + DG+LFWQSPKRPP+PI+F+ ++ H++F+ + A+L A ++ I E+D A+ +L+IL ++ EF P NK ++TDE+ K D DE + I +L + S+LQ + V FEKD+D NGHIDFIT+ASNLRA MY+I ADRFKTKRIAG+IIPAIATTTA ++GL +LE+IKV G P E KNCFLNLA+P++V +E KTKI++G+ FT+WDRW V G ++ L DFIN K+ + + +MV +GVKM+Y+P+MPGH KR K M KL+KP +Y DL + F
Sbjct: 37 VEIDDALYSRQRYVLGDTAMQKMAKSHVFLSGMGGLGLEIAKNLVLAGIKAVTIHDTEKCQAWDLGTNFFLSEDDVVNKRNRAEAVLKHIAELNPYVHVTSSSVPFNETTDLSFLDKYQCVVLTEMKLPLQKKINDFCRSQCPPIKFISADVHGIWSRLFCDFGDEFEVLDTTGEEPKEIFISNITQANPGIVTCLENHPHKLETGQFLTFREINGMTGLNGSIQQITVISPFSFSIG-DT--TELEPYLHGGIAVQVKTPKTVFFESLERQLKHPKCLIVDFSNPEAPLEIHTAMLALDQFQEKYSRKPNVGCQQDSEELL-----KLATSISETLEEKPDVNADIVHWLSWTAQGFLSPLAAAVGGVASQEVLKAVTGKFSPLCQWLYLEAADIVESLGKPECEEFLPRGDRYDALRACIGDTLCQKLQNLNIFLVGCGAIGCEMLKNFALLGVGTSKEKGMITVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAADATLKINSQIKIDAHLNKVCPTTE-TIYNDEFYTKQDVIITALDNVEARRYVDSRCLANLRPLLDSGTMGTKGHTEVIVPHLTESYNSHRDPPEEEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKPSLFNKFWQTYSSAEEVLQKIQSGHSLEGCFQVIKLLSRRPRNWSQCVELARLKFEKYFNHKALQLLHCFPLDIRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQNAAKLYATVYCIPFAEEDLSADALLNILSEVKIQEFKPSNKVVQTDETARKPDHVPISSEDERNAIFQLEKAILSNEATKSDLQ---MAVLSFEKDDDHNGHIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIPAIATTTATVSGLVALEMIKVTGGYPFEAYKNCFLNLAIPIVVFTETTEVRKTKIRNGISFTIWDRWTVHGKEDFTLLDFINAVKEKYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPTTEKKYVDLTVSF 1028 The following BLAST results are available for this feature:
BLAST of TCONS_00012166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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