TCONS_00012165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012165
Unique NameTCONS_00012165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012165 ID=TCONS_00012165|Name=TCONS_00012165|organism=Clytia hemisphaerica|type=transcript|length=1672bp
tttttagaaatagtAATGACAGTTCGTAAAAGATACAATGAAAACAAGGC
TTTAGAACCATCACAGAATGTCCAGAATGTCAACCCAAAAGAAAACAACA
ACTACTTccaaaatcctcaaaatttctTCACAATTTCCTTAATGTTAAGG
ATATCATCAGTACTTTTAACGCAAACATTTTTCGTACCTGATGAATATTG
GCAAAGCACCGAAGTGGCTCATCGTCAAGTTTTCGGTTACGGTTATTTAA
CCTGGGAATGGAAAGCTCAAATACGATCATATTTCTATCCGTTCATATTT
GAAATGTATTTTCAACTACTAAAAATGTTAACTGtagatttttatgtttt
ggttAGATATGGGCCACATATCATACAAGCAGTACTAACTGCATATTATG
ATATTTCACTTCACAAATTAACATTGAATGTAACAGACAATCTTGAAATA
GCTAATTATTCATACTACCTGAATTTAATGTCTTGGTTTTTGTTTTATAC
TGGCTCAAGAACATTATCAAATGTTGCAGAAATGTGTTTTTCAACTATTG
GtttatctttcttttcttttgggAAACCATCTGATGTCAACTCATTGTTT
TTTGCATTATTATTTGGTGGCATTGGTTGTATAATACGACCTACCTGCTT
CCTGATCTGGATAcctttagtttttgttttactCTTGAAAAAGGGGATTC
ACATTTTGACTTTATTTAAAGCTTGTTTTATAGCAGTTCCTGTTCTATTG
GTGTTACTATTTGgtattgatttttatttttatggcTCATTTACTATTGT
GCATTGGAAtttcttacagtttaatattttggaGAATATTGGAGAATTTT
ATGGAGCTCACTCATGGCATTGGTATCTATCACAAGGTTTACCTGTTGTC
TTTGGTGTgcaggttttgttttttattgttgGTGTTTTTTGCAGCGGACC
AAAACAAAAGACTTTGCTATGGATTTCaatgttttatattttcgtaCATA
GcaTGATCGTACACAAGGAGTTTCGTTTCTTGCTACCTGTGGTACCCCTA
CTATTATGTTATGCTGGCCAAGGTTTCAAGTACCTCTCAAAATACGTTTC
CCAAAGACTACTTTTTCTACTTGTTTTACTATTGAACGTTCCAGTGGCAC
TTTATTTTGGTTTGATACATCAAAGAGGAACCATAGACGTGTTACATTTT
ATTAGACAATCAAATATTGAGGATGAagatgttttatttttaatgccttG
CCATTCCACACCATACTATAGTTATCTCCATCAAAACATTACCATGAGAT
TCTTAACATGTGAACCAAATACTGAGGTTGGTTATCTGTGTGAAAGTGac
cagttttttgaaaaccccTTACAGTGGCTTCATAGGGAATTTCAACTCAG
CTCGCTCATTGTGACTTATGATAGATTGCCAAAGgaTGCTAAATGGTTTT
TGAGTGAAAGAAATTATACCATTGTGAAAACGTTATTTCACACACATCTG
CCAGAAGGAAACATTGGAAGCTATATCAACATTTATTCAAGATGACTTGA
GATGCAATTGAAGCTTTGGCGATTTTCGAAAGCTTTTTTCTCTCATTTCC
ATGTAACAATTAAGCAGAATACAATAtgttcaagttttttttgtgtCATA
CATTAGTCATGCTATAAACCGA
Run BLAST on NCBI

protein sequence of TCONS_00012165-protein

>TCONS_00012165-protein ID=TCONS_00012165-protein|Name=TCONS_00012165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
FLEIVMTVRKRYNENKALEPSQNVQNVNPKENNNYFQNPQNFFTISLMLR
ISSVLLTQTFFVPDEYWQSTEVAHRQVFGYGYLTWEWKAQIRSYFYPFIF
EMYFQLLKMLTVDFYVLVRYGPHIIQAVLTAYYDISLHKLTLNVTDNLEI
ANYSYYLNLMSWFLFYTGSRTLSNVAEMCFSTIGLSFFSFGKPSDVNSLF
FALLFGGIGCIIRPTCFLIWIPLVFVLLLKKGIHILTLFKACFIAVPVLL
VLLFGIDFYFYGSFTIVHWNFLQFNILENIGEFYGAHSWHWYLSQGLPVV
FGVQVLFFIVGVFCSGPKQKTLLWISMFYIFVHSMIVHKEFRFLLPVVPL
LLCYAGQGFKYLSKYVSQRLLFLLVLLLNVPVALYFGLIHQRGTIDVLHF
IRQSNIEDEDVLFLMPCHSTPYYSYLHQNITMRFLTCEPNTEVGYLCESD
QFFENPLQWLHREFQLSSLIVTYDRLPKDAKWFLSERNYTIVKTLFHTHL
PEGNIGSYINIYSR
Run BLAST on NCBI

transcript from alignment at sc0000141:274878..279164+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012165 ID=TCONS_00012165|Name=TCONS_00012165|organism=Clytia hemisphaerica|type=transcript|length=4287bp|location=Sequence derived from alignment at sc0000141:274878..279164+ (Clytia hemisphaerica)
tttttagaaatagtAATGACAGTTCGTAAAAGATACAATGAAAACAAGGC
TTTAGAACCATCACAGAATGTCCAGAATGTCAACCCAAAAGAAAACAACA
ACTACTTccaaaatcctcaaaatttctTCACAATTTCCTTAATGTTAAGG
ATATCATCAGTACTTTTAACGCAAACATTTTTCGTACCTGATGAATATTG
GCAAAGCACCGAAGTGGCTCATCGTCAAGTTTTCGGTTACGGTTATTTAA
CCTGGGAATGGAAAGCTCAAATACGATCATATTTCTATCCGTTCATATTT
GAAATGTATTTTCAACTACTAAAAATGTTAACTGtagatttttatgtttt
ggttAGATATGGGCCACATATCATACAAGCAGTACTAACTGCATATTATG
ATATTTCACTTCACAAATTAACATTGAATGTAACAGACAATCTTGAAATA
GCTAATTATTCATACTACCTGAATTTAATGTCTTGGTTTTTGTTTTATAC
TGGCTCAAGAACATTATCAAATGTTGCAGAAATGTGTTTTTCAACTATTG
GtttatctttcttttcttttgggAAACCATCTGATGTCAACTCATTGTTT
TTTGCATTATTATTTGGTGGCATTGGTTGTATAATACGACCTACCTGCTT
CCTGATCTGGATAcctttagtttttgttttactCTTGAAAAAGGGGATTC
ACATTTTGACTTTATTTAAAGCTTGTTTTATAGCAGTTCCTGTTCTATTG
GTGTTACTATTTGgtattgatttttatttttatggcTCATTTACTATTGT
GCATTGGAAtttcttacagtttaatattttggaGAATATTGGAGAATTTT
ATGGAGCTCACTCATGGCATTGGTATCTATCACAAGGTTTACCTGTTGTC
TTTGGTGTgcaggttttgttttttattgttgGTGTTTTTTGCAGCGGACC
AAAACAAAAGACTTTGCTATGGATTTCaatgttttatattttcgtaCATA
GGTAAAGATCCAGATCAGGtttcattctttattttttattttttcactca
ATGCTTGAAACTCGGCAGAGAGATTGATAAGATTGTAACGAATACATAGA
AATTAAACAAGTCTCCATAATAAAACAAGTCTCCAaatttctataactcg
aacaaatttctgTTCTCCTATTacatgttcgagttatggagactccaatg
ttcatgttcaattttgtttgtttttctttcagcaTGATCGTACACAAGGA
GTTTCGTTTCTTGCTACCTGTGGTACCCCTACTATTATGTTATGCTGGCC
AAGGTTTCAAGTACCTCTCAAAATACGTTTCCCAAAGACTACTTTTTCTA
CTTGTTTTACTATTGAACGTTCCAGTGGCACTTTATTTTGGTTTGATACA
TCAAAGAGGAACCATAGACGTGTTACATTTTATTAGACAATCAAATATTG
AGGATGAagatgttttatttttaatgccttGCCATTCCACACCATACTAT
AGGTGAGAAAGACCTCATTATTGTGACTGGATTCACTATAAATGCAGTGT
TCTTGGTTCTAAAATTGCTCTGTAGACCGAGTATTCTTTTTAGTTTCTTT
ATTTAccttaagaaaagaaattttaacggggatttaatttggcgggtgga
gcaaaaagatttttcagaggaagtttgatttggctgatcggcaatgaaat
taattttggtgggaattcAATTTGGCAGACTTTCAGTTTCGAggctcaaa
aaattttgaaaatacccCTGTTTAGGACTAAATAGGGAAAATGATATGAG
AAAACttaaatttggtgggaatttaatttcgcggattttcttTCCGGTTT
TCAGGTACTTCGATTTGGATTATTGTCTGTCCCTTGACACCGTTCCGTCT
TTAGATACATTGCTGATGTCACTTATGTACTTTTTAAAAGAGCTGACGta
acttttattaaaaaaacgtgtattcttttTAGTTTGTTTGGATTATATCT
GTCCCAGATGGACACGGCTTCCTTGACACTGTTCTGTCTTTAACTTTTTA
CAAATACCCCCACCCCCTATAATTCACGGCGTCACTTGATGTTCTTTTTC
AAAGAACTGACACCACTTTAATGTAAGGCAAAACACGTAAAATGCGTGGT
GGGATAGAAGCCTTTTTGTCTCCAGAAATACCTTCGTTTTGGTGGAGCTT
CTCTATTATAATACCGGCTAATGATGAATGTTATCAACTTGAAATATATC
TCGGGTTTCTTTATTTCAGTTATCTCCATCAAAACATTACCATGAGATTC
TTAACATGTGAACCAAATACTGAGGTTGGTTATCTGTGTGAAAGTGacca
gttttttgaaaaccccTTACAGTGGCTTCATAGGGAATTTCAACTCAGCT
CGCTCATTGTGACTTATGATAGATTGCCAAAGGTATGGTCTTTTGTTTAT
TATGGTTTTTCAATATGTTTTGCGTGAGGAAGAAAGGGTGCACCTATTCT
AAGGTATTCATTCACTCACCATCTGAATAAGGCTATCACtgtctcactaa
cattctgccgaCTGGTAGTGTGAaagtttcgatcacagacttgcacgGCA
ATGGACTatgttcgaatcccaagcacttccaggtagggtgttagggaaat
atggcgatcgactctctaccttcactcatatAAAGATATTACCGACCTTA
TTACAGAGATATTATCGTCCTTTTTCACTCACCATCTGAATAAGGCTATC
ACTGtgtctcactaacattctgccgactggtagtgtgaaggtttcgatca
caaaCTTGCACGGCGATGAACTGTGTTCTAATCCAAAGCTCTTCCAGGTA
GGGTGTTGGGAATACCTTCaccaaatacaaaatatttacattCGAGTCGT
CTGTATTGTATTGGAGAATCTTCAGGACTTTCTCTTCCTCCTCCTTCGGa
agtaccgagtttatgtatgtgtgtttttctgcggcGGAGACGGTAAAGTT
CTAACTTatctacatcctgactgactaaggacgacggtaaatcaacaCTT
TTACCATCCTCGATGGTATGCGGGtctttccaaatcgcttcagtcactct
accgtcctcaaaagtgcaaatacataaaatcGCTAGTGTTATATTTCTAA
ATGGACAGAAAGTTTTGTTTAGACTCCCACCGTTCACATTTTCTAGCTTG
AaatcaaattattcagaatacAGGTTGCATAAAAATCCTCGTCGCAccta
aattcatgatattcacgaATTCACCATTGCAATGTGTTCTGACATTACAA
CAccgacccaatagctgattggttgtaagtgacgtaaaatcagtcaatac
gttgGGTGTTGGGtgcgtggaagacattgcaatggtgcatatcatgaaat
tACCCTCCTTATTACCATTAATACNGTCTGTCCCTGTAAAAAGTTGACTT
CACCTCGCCCCTCCTTCCTTTacacattagcgagtttatgtatttgcact
tttgaggacggtagagtgacttaagcgatttggaaaaacccgcaattccg
ccccgcaaaatcgaggacggtaaaagtgctgatttaccgtcgtccttagt
cagtcaggatgtagataagttagaaccttaccgtctccgtcgctgaaaaa
cacacatacataaactcgctactatTTATCGTGACACGGGACACGTTTCT
CTTCTGAAGTATCCTATGTGTAGTCCTACTTATGAGATAGTTTGCACTCT
GTATTTAAAAATCATGACTTTTGGCAtgttttcatcttttttatttagga
TGCTAAATGGTTTTTGAGTGAAAGAAATTATACCATTGTAAGTATAGTCG
AGTCGATTTTTTTGTGGCTTCTTTCATTGTTAACTCCTGGGAATATTATG
GTCATACATTAACTTCTTTTAGGAGGTTCCTTGAAGAAAAATTCGTTTGA
ATTACTTAAGTATTTTGGAAATCCTCGATTACATCCTAATAAATCAGACT
ACTTAATTCTGATTTGAATTCTCGTGCGTTGAAAATGCAGTTTTTTTGTT
GAGTACTCTAAAACCGtcacttttttatatttatccAGGTGAAAACGTTA
TTTCACACACATCTGCCAGAAGGAAACATTGGAAGCTATATCAACATTTA
TTCAAGATGACTTGAGATGCAATTGAAGCTTTGGCGATTTTCGAAAGCTT
TTTTCTCTCATTTCCATGTAACAATTAAGCAGAATACAATAtgttcaagt
tttttttgtgtCATACATTAGTCATGCTATAAACCGA

Coding sequence (CDS) from alignment at sc0000141:274878..279164+

>TCONS_00012165 ID=TCONS_00012165|Name=TCONS_00012165|organism=Clytia hemisphaerica|type=CDS|length=7725bp|location=Sequence derived from alignment at sc0000141:274878..279164+ (Clytia hemisphaerica)
tttttagaaatagtAATGACAGTTCGTAAAAGATACAATGAAAACAAGGC
TTTAGAACCATCACAGAATGTCCAGAATGTCAACCCAAAAGAAAACAACA
ACTACTTccaaaatcctcaaaatttctTCACAATTTCCTTAATGTTAAGG
ATATCATCAGTACTTTTAACGCAAACATTTTTCGTACCTGATGAATATTG
GCAAAGCACCGAAGTGGCTCATCGTCAAGTTTTCGGTTACGGTTATTTAA
CCTGGGAATGGAAAGCTCAAATACGATCATATTTCTATCCGTTCATATTT
GAAATGTATTTTCAACTACTAAAAATGTTAACTGtagatttttatgtttt
ggttAGATATGGGCCACATATCATACAAGCAGTACTAACTGCATATTATG
ATATTTCACTTCACAAATTAACATTGAATGTAACAGACAATCTTGAAATA
GCTAATTATTCATACTACCTGAATTTAATGTCTTGGTTTTTGTTTTATAC
TGGCTCAAGAACATTATCAAATGTTGCAGAAATGTGTTTTTCAACTATTG
GtttatctttcttttcttttgggAAACCATCTGATGTCAACTCATTGTTT
TTTGCATTATTATTTGGTGGCATTGGTTGTATAATACGACCTACCTGCTT
CCTGATCTGGATAcctttagtttttgttttactCTTGAAAAAGGGGATTC
ACATTTTGACTTTATTTAAAGCTTGTTTTATAGCAGTTCCTGTTCTATTG
GTGTTACTATTTGgtattgatttttatttttatggcTCATTTACTATTGT
GCATTGGAAtttcttacagtttaatattttggaGAATATTGGAGAATTTT
ATGGAGCTCACTCATGGCATTGGTATCTATCACAAGGTTTACCTGTTGTC
TTTGGTGTgcaggttttgttttttattgttgGTGTTTTTTGCAGCGGACC
AAAACAAAAGACTTTGCTATGGATTTCaatgttttatattttcgtaCATA
GcaTGATCGTACACAAGGAGTTTCGTTTCTTGCTACCTGTGGTACCCCTA
CTATTATGTTATGCTGGCCAAGGTTTCAAGTACCTCTCAAAATACGTTTC
CCAAAGACTACTTTTTCTACTTGTTTTACTATTGAACGTTCCAGTGGCAC
TTTATTTTGGTTTGATACATCAAAGAGGAACCATAGACGTGTTACATTTT
ATTAGACAATCAAATATTGAGGATGAagatgttttatttttaatgccttG
CCATTCCACACCATACTATAGTTATCTCCATCAAAACATTACCATGAGAT
TCTTAACATGTGAACCAAATACTGAGGTTGGTTATCTGTGTGAAAGTGac
cagttttttgaaaaccccTTACAGTGGCTTCATAGGGAATTTCAACTCAG
CTCGCTCATTGTGACTTATGATAGATTGCCAAAGgaTGCTAAATGGTTTT
TGAGTGAAAGAAATTATACCATTGTGAAAACGTTATTTCACACACATCTG
CCAGAAGGAAACATTGGAAGCTATATCAACATTTATTCAAGATGAttttt
agaaatagtAATGACAGTTCGTAAAAGATACAATGAAAACAAGGCTTTAG
AACCATCACAGAATGTCCAGAATGTCAACCCAAAAGAAAACAACAACTAC
TTccaaaatcctcaaaatttctTCACAATTTCCTTAATGTTAAGGATATC
ATCAGTACTTTTAACGCAAACATTTTTCGTACCTGATGAATATTGGCAAA
GCACCGAAGTGGCTCATCGTCAAGTTTTCGGTTACGGTTATTTAACCTGG
GAATGGAAAGCTCAAATACGATCATATTTCTATCCGTTCATATTTGAAAT
GTATTTTCAACTACTAAAAATGTTAACTGtagatttttatgttttggttA
GATATGGGCCACATATCATACAAGCAGTACTAACTGCATATTATGATATT
TCACTTCACAAATTAACATTGAATGTAACAGACAATCTTGAAATAGCTAA
TTATTCATACTACCTGAATTTAATGTCTTGGTTTTTGTTTTATACTGGCT
CAAGAACATTATCAAATGTTGCAGAAATGTGTTTTTCAACTATTGGttta
tctttcttttcttttgggAAACCATCTGATGTCAACTCATTGTTTTTTGC
ATTATTATTTGGTGGCATTGGTTGTATAATACGACCTACCTGCTTCCTGA
TCTGGATAcctttagtttttgttttactCTTGAAAAAGGGGATTCACATT
TTGACTTTATTTAAAGCTTGTTTTATAGCAGTTCCTGTTCTATTGGTGTT
ACTATTTGgtattgatttttatttttatggcTCATTTACTATTGTGCATT
GGAAtttcttacagtttaatattttggaGAATATTGGAGAATTTTATGGA
GCTCACTCATGGCATTGGTATCTATCACAAGGTTTACCTGTTGTCTTTGG
TGTgcaggttttgttttttattgttgGTGTTTTTTGCAGCGGACCAAAAC
AAAAGACTTTGCTATGGATTTCaatgttttatattttcgtaCATAGcaTG
ATCGTACACAAGGAGTTTCGTTTCTTGCTACCTGTGGTACCCCTACTATT
ATGTTATGCTGGCCAAGGTTTCAAGTACCTCTCAAAATACGTTTCCCAAA
GACTACTTTTTCTACTTGTTTTACTATTGAACGTTCCAGTGGCACTTTAT
TTTGGTTTGATACATCAAAGAGGAACCATAGACGTGTTACATTTTATTAG
ACAATCAAATATTGAGGATGAagatgttttatttttaatgccttGCCATT
CCACACCATACTATAGTTATCTCCATCAAAACATTACCATGAGATTCTTA
ACATGTGAACCAAATACTGAGGTTGGTTATCTGTGTGAAAGTGaccagtt
ttttgaaaaccccTTACAGTGGCTTCATAGGGAATTTCAACTCAGCTCGC
TCATTGTGACTTATGATAGATTGCCAAAGgaTGCTAAATGGTTTTTGAGT
GAAAGAAATTATACCATTGTGAAAACGTTATTTCACACACATCTGCCAGA
AGGAAACATTGGAAGCTATATCAACATTTATTCAAGATGAtttttagaaa
tagtAATGACAGTTCGTAAAAGATACAATGAAAACAAGGCTTTAGAACCA
TCACAGAATGTCCAGAATGTCAACCCAAAAGAAAACAACAACTACTTcca
aaatcctcaaaatttctTCACAATTTCCTTAATGTTAAGGATATCATCAG
TACTTTTAACGCAAACATTTTTCGTACCTGATGAATATTGGCAAAGCACC
GAAGTGGCTCATCGTCAAGTTTTCGGTTACGGTTATTTAACCTGGGAATG
GAAAGCTCAAATACGATCATATTTCTATCCGTTCATATTTGAAATGTATT
TTCAACTACTAAAAATGTTAACTGtagatttttatgttttggttAGATAT
GGGCCACATATCATACAAGCAGTACTAACTGCATATTATGATATTTCACT
TCACAAATTAACATTGAATGTAACAGACAATCTTGAAATAGCTAATTATT
CATACTACCTGAATTTAATGTCTTGGTTTTTGTTTTATACTGGCTCAAGA
ACATTATCAAATGTTGCAGAAATGTGTTTTTCAACTATTGGtttatcttt
cttttcttttgggAAACCATCTGATGTCAACTCATTGTTTTTTGCATTAT
TATTTGGTGGCATTGGTTGTATAATACGACCTACCTGCTTCCTGATCTGG
ATAcctttagtttttgttttactCTTGAAAAAGGGGATTCACATTTTGAC
TTTATTTAAAGCTTGTTTTATAGCAGTTCCTGTTCTATTGGTGTTACTAT
TTGgtattgatttttatttttatggcTCATTTACTATTGTGCATTGGAAt
ttcttacagtttaatattttggaGAATATTGGAGAATTTTATGGAGCTCA
CTCATGGCATTGGTATCTATCACAAGGTTTACCTGTTGTCTTTGGTGTgc
aggttttgttttttattgttgGTGTTTTTTGCAGCGGACCAAAACAAAAG
ACTTTGCTATGGATTTCaatgttttatattttcgtaCATAGcaTGATCGT
ACACAAGGAGTTTCGTTTCTTGCTACCTGTGGTACCCCTACTATTATGTT
ATGCTGGCCAAGGTTTCAAGTACCTCTCAAAATACGTTTCCCAAAGACTA
CTTTTTCTACTTGTTTTACTATTGAACGTTCCAGTGGCACTTTATTTTGG
TTTGATACATCAAAGAGGAACCATAGACGTGTTACATTTTATTAGACAAT
CAAATATTGAGGATGAagatgttttatttttaatgccttGCCATTCCACA
CCATACTATAGTTATCTCCATCAAAACATTACCATGAGATTCTTAACATG
TGAACCAAATACTGAGGTTGGTTATCTGTGTGAAAGTGaccagttttttg
aaaaccccTTACAGTGGCTTCATAGGGAATTTCAACTCAGCTCGCTCATT
GTGACTTATGATAGATTGCCAAAGgaTGCTAAATGGTTTTTGAGTGAAAG
AAATTATACCATTGTGAAAACGTTATTTCACACACATCTGCCAGAAGGAA
ACATTGGAAGCTATATCAACATTTATTCAAGATGAtttttagaaatagtA
ATGACAGTTCGTAAAAGATACAATGAAAACAAGGCTTTAGAACCATCACA
GAATGTCCAGAATGTCAACCCAAAAGAAAACAACAACTACTTccaaaatc
ctcaaaatttctTCACAATTTCCTTAATGTTAAGGATATCATCAGTACTT
TTAACGCAAACATTTTTCGTACCTGATGAATATTGGCAAAGCACCGAAGT
GGCTCATCGTCAAGTTTTCGGTTACGGTTATTTAACCTGGGAATGGAAAG
CTCAAATACGATCATATTTCTATCCGTTCATATTTGAAATGTATTTTCAA
CTACTAAAAATGTTAACTGtagatttttatgttttggttAGATATGGGCC
ACATATCATACAAGCAGTACTAACTGCATATTATGATATTTCACTTCACA
AATTAACATTGAATGTAACAGACAATCTTGAAATAGCTAATTATTCATAC
TACCTGAATTTAATGTCTTGGTTTTTGTTTTATACTGGCTCAAGAACATT
ATCAAATGTTGCAGAAATGTGTTTTTCAACTATTGGtttatctttctttt
cttttgggAAACCATCTGATGTCAACTCATTGTTTTTTGCATTATTATTT
GGTGGCATTGGTTGTATAATACGACCTACCTGCTTCCTGATCTGGATAcc
tttagtttttgttttactCTTGAAAAAGGGGATTCACATTTTGACTTTAT
TTAAAGCTTGTTTTATAGCAGTTCCTGTTCTATTGGTGTTACTATTTGgt
attgatttttatttttatggcTCATTTACTATTGTGCATTGGAAtttctt
acagtttaatattttggaGAATATTGGAGAATTTTATGGAGCTCACTCAT
GGCATTGGTATCTATCACAAGGTTTACCTGTTGTCTTTGGTGTgcaggtt
ttgttttttattgttgGTGTTTTTTGCAGCGGACCAAAACAAAAGACTTT
GCTATGGATTTCaatgttttatattttcgtaCATAGcaTGATCGTACACA
AGGAGTTTCGTTTCTTGCTACCTGTGGTACCCCTACTATTATGTTATGCT
GGCCAAGGTTTCAAGTACCTCTCAAAATACGTTTCCCAAAGACTACTTTT
TCTACTTGTTTTACTATTGAACGTTCCAGTGGCACTTTATTTTGGTTTGA
TACATCAAAGAGGAACCATAGACGTGTTACATTTTATTAGACAATCAAAT
ATTGAGGATGAagatgttttatttttaatgccttGCCATTCCACACCATA
CTATAGTTATCTCCATCAAAACATTACCATGAGATTCTTAACATGTGAAC
CAAATACTGAGGTTGGTTATCTGTGTGAAAGTGaccagttttttgaaaac
cccTTACAGTGGCTTCATAGGGAATTTCAACTCAGCTCGCTCATTGTGAC
TTATGATAGATTGCCAAAGgaTGCTAAATGGTTTTTGAGTGAAAGAAATT
ATACCATTGTGAAAACGTTATTTCACACACATCTGCCAGAAGGAAACATT
GGAAGCTATATCAACATTTATTCAAGATGAtttttagaaatagtAATGAC
AGTTCGTAAAAGATACAATGAAAACAAGGCTTTAGAACCATCACAGAATG
TCCAGAATGTCAACCCAAAAGAAAACAACAACTACTTccaaaatcctcaa
aatttctTCACAATTTCCTTAATGTTAAGGATATCATCAGTACTTTTAAC
GCAAACATTTTTCGTACCTGATGAATATTGGCAAAGCACCGAAGTGGCTC
ATCGTCAAGTTTTCGGTTACGGTTATTTAACCTGGGAATGGAAAGCTCAA
ATACGATCATATTTCTATCCGTTCATATTTGAAATGTATTTTCAACTACT
AAAAATGTTAACTGtagatttttatgttttggttAGATATGGGCCACATA
TCATACAAGCAGTACTAACTGCATATTATGATATTTCACTTCACAAATTA
ACATTGAATGTAACAGACAATCTTGAAATAGCTAATTATTCATACTACCT
GAATTTAATGTCTTGGTTTTTGTTTTATACTGGCTCAAGAACATTATCAA
ATGTTGCAGAAATGTGTTTTTCAACTATTGGtttatctttcttttctttt
gggAAACCATCTGATGTCAACTCATTGTTTTTTGCATTATTATTTGGTGG
CATTGGTTGTATAATACGACCTACCTGCTTCCTGATCTGGATAcctttag
tttttgttttactCTTGAAAAAGGGGATTCACATTTTGACTTTATTTAAA
GCTTGTTTTATAGCAGTTCCTGTTCTATTGGTGTTACTATTTGgtattga
tttttatttttatggcTCATTTACTATTGTGCATTGGAAtttcttacagt
ttaatattttggaGAATATTGGAGAATTTTATGGAGCTCACTCATGGCAT
TGGTATCTATCACAAGGTTTACCTGTTGTCTTTGGTGTgcaggttttgtt
ttttattgttgGTGTTTTTTGCAGCGGACCAAAACAAAAGACTTTGCTAT
GGATTTCaatgttttatattttcgtaCATAGcaTGATCGTACACAAGGAG
TTTCGTTTCTTGCTACCTGTGGTACCCCTACTATTATGTTATGCTGGCCA
AGGTTTCAAGTACCTCTCAAAATACGTTTCCCAAAGACTACTTTTTCTAC
TTGTTTTACTATTGAACGTTCCAGTGGCACTTTATTTTGGTTTGATACAT
CAAAGAGGAACCATAGACGTGTTACATTTTATTAGACAATCAAATATTGA
GGATGAagatgttttatttttaatgccttGCCATTCCACACCATACTATA
GTTATCTCCATCAAAACATTACCATGAGATTCTTAACATGTGAACCAAAT
ACTGAGGTTGGTTATCTGTGTGAAAGTGaccagttttttgaaaaccccTT
ACAGTGGCTTCATAGGGAATTTCAACTCAGCTCGCTCATTGTGACTTATG
ATAGATTGCCAAAGgaTGCTAAATGGTTTTTGAGTGAAAGAAATTATACC
ATTGTGAAAACGTTATTTCACACACATCTGCCAGAAGGAAACATTGGAAG
CTATATCAACATTTATTCAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006848XLOC_006848Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012165-proteinTCONS_00012165-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012165-exon-sc0000141-1491911889:274878..275878TCONS_00012165-exon-sc0000141-1491911889:274878..275878Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1510915933:274878..275878TCONS_00012165-exon-sc0000141-1510915933:274878..275878Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1575043694:274878..275878TCONS_00012165-exon-sc0000141-1575043694:274878..275878Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1491911889:276110..276379TCONS_00012165-exon-sc0000141-1491911889:276110..276379Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1510915933:276110..276379TCONS_00012165-exon-sc0000141-1510915933:276110..276379Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1575043694:276110..276379TCONS_00012165-exon-sc0000141-1575043694:276110..276379Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1491911889:277147..277309TCONS_00012165-exon-sc0000141-1491911889:277147..277309Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1510915933:277147..277309TCONS_00012165-exon-sc0000141-1510915933:277147..277309Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1575043694:277147..277309TCONS_00012165-exon-sc0000141-1575043694:277147..277309Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1491911889:278676..278714TCONS_00012165-exon-sc0000141-1491911889:278676..278714Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1510915933:278676..278714TCONS_00012165-exon-sc0000141-1510915933:278676..278714Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1575043694:278676..278714TCONS_00012165-exon-sc0000141-1575043694:278676..278714Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1491911889:278966..279164TCONS_00012165-exon-sc0000141-1491911889:278966..279164Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1510915933:278966..279164TCONS_00012165-exon-sc0000141-1510915933:278966..279164Clytia hemisphaericaexon
TCONS_00012165-exon-sc0000141-1575043694:278966..279164TCONS_00012165-exon-sc0000141-1575043694:278966..279164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:274878..279164 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.0047	53.4908	37.1494	31.053	4.61105	3.59203	3.99068	4.55328	4.12787	3.82212	6.14212	4.37675	5.08029	5.29268	5.1775	4.77306	5.46131	5.8589	3.76363	3.26399	4.7127	4.80323	24.5236	22.3208	5.72795	7.27307	6.3178	5.74889	13.3771	16.0149
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005599GPI_mannosylTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
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BLAST of TCONS_00012165 vs. Swiss-Prot (Human)
Match: PIGB (GPI mannosyltransferase 3 OS=Homo sapiens GN=PIGB PE=1 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 2.341e-107
Identity = 198/489 (40.49%), Postives = 293/489 (59.92%), Query Frame = 1 
Query:  136 SLMLRISSVLLTQTFFVPDEYWQSTEVAHRQVFGYGYLTWEWKAQIRSYFYPFIFEMYFQLLKMLTVDFYVLVRYGPHIIQAVLTAYYDISLHKLTLNVTDNLEIANYSYYLNLMSWFLFYTGSRTLSNVAEMCFSTIGLSFFSFGKPSDVNSLFFALLFGGIGCIIRPTCFLIWIPLVFVLLLKKGIHILTLFKACFIAVP-VLLVLLFGIDFYFYGSFTIVHWNFLQFNILENIGEFYGAHSWHWYLSQGLPVVFGVQVLFFIVGVFCSGPKQKTLLWISMFYIFVHSMIVHKEFRFXXXXXXXXXCYAGQGFKYLSKYVSQRXXXXXXXXXXXXXXXYFGLIHQRGTIDVLHFIRQ-----SNIEDEDVLFLMPCHSTPYYSYLHQNITMRFLTCEPN--TEVGYLCESDQFFENPLQWLHREFQ----LSSLIVTYDRLPKDAKWFLSERNYTIVKTLFHTHLPEGNIGSYINIYSR*LEMQLKL 1566
            ++ LRI +  L QT FVPDEYWQS EV+H  VF YGYLTWEW  ++RSY YP IF   +++L +L  D   L+ + P + QA+L+A  D+ L+ L +   +N E+A + ++  L SWF +Y  +RTL+N  E   + I L ++       +NS+ ++ L   +  IIRPT  ++W PL+F    ++    L L    F+ V  V L L   ID  F+G +T+V +NFL+FN+L+N G FYG+H WHWY SQG PV+ G  + FFI G + +  + + LL   ++ + V+SM+ HKEFRF+ PV+P  + + G    +L  +  ++     + L N+ +ALY GL+HQRGT+DV+  I++      N     +  +MPCHSTPYYS++H  + MRFL C P+   +  YL E+D F+ NPL WLHREF     L + ++T+  L ++   FL   NY      FHTHLPEG IGS+I +Y R L+ +  +
Sbjct:   67 TIALRILNCFLVQTSFVPDEYWQSLEVSHHMVFNYGYLTWEWTERLRSYTYPLIFASIYKILHLLGKDSVQLLIWIPRLAQALLSAVADVRLYSL-MKQLENQEVARWVFFCQLCSWFTWYCCTRTLTNTMETVLTIIALFYYPLEGSKSMNSVKYSSLVA-LAFIIRPTAVILWTPLLFRHFCQEP-RKLDLILHHFLPVGFVTLSLSLMIDRIFFGQWTLVQFNFLKFNVLQNWGTFYGSHPWHWYFSQGFPVILGTHLPFFIHGCYLAPKRYRILLVTVLWTLLVYSMLSHKEFRFIYPVLPFCMVFCGYSLTHLKTW--KKPALSFLFLSNLFLALYTGLVHQRGTLDVMSHIQKVCYNNPNKSSASIFIMMPCHSTPYYSHVHCPLPMRFLQCPPDLTGKSHYLDEADVFYLNPLNWLHREFHDDASLPTHLITFSILEEEISAFLISSNYKRTAVFFHTHLPEGRIGSHIYVYERKLKGKFNM 550
The following BLAST results are available for this feature:
BLAST of TCONS_00012165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIGB2.341e-10740.49GPI mannosyltransferase 3 OS=Homo sapiens GN=PIGB ... [more]
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