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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012162 ID=TCONS_00012162|Name=TCONS_00012162|organism=Clytia hemisphaerica|type=transcript|length=2052bp
tgatgttattttcaaaaacagtTCGGGCATTTGAGATGATTTAAATAAAT
CAACTACTTATTGCATTTTTTGATGCATTGAGTTTTTATTCGTCCTTGTT
TGTGTCTGTGTCTCTTTATGTTTGTTGATGCTGTTTAAGAAAAAATGAAT
CCTGAAGATAAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAATCCAAT
GGTGGAAATGGATAGTGGAGAGATTGTCAAACTgaaagaagaacatcaaa
aagaaattcaaaaactgACCTATGAATCAAAGATAGAGATGATGGAATCA
CAAATGAAAATCACGCagctagaaaaagaaaatcaaactttATCTCATCA
ATTTGAGATGTTCATACTAAAGAATTCTTATGAATCTCAATCAAGTCAAG
TTCAAGCTGATCAACAACTCCAAAAACAGAAAGACGAGCTCCAAAATAAG
TTAGTTGAAAAGGAGAAACAATTAGTAGCCAAAGAGCACGAAATGGTTTT
GTACAAGAAAGAACAagaaaatgaatggaaaatgaaaatgaaagatttgG
AAAACGAACACAAAATTAAAATGTTACAAAAGGAGGTAAAAATAGCCGAG
ATGGAGAAAGTaatgaaagaaaatgaagaaaccATACAGAAAATGAGAGC
TGAAATGAAAACTGTTAATGAGCAGGCAGTCAAAAAAGAAAGTGCCCGGC
TGGATACTCCTGNTCTCAATCAAGTCAAGTTCAAGCTGATCAACAACTCC
AAAAACAGAAAGACGAGCTCCAAAATAAGTTAGTTGAAAAGGAGAAACAA
TTAGTAGCCAAAGAGCACGAAATGGTTTTGTACAAGAAAGAACAagaaaa
tgaatggaaaatgaaaatgaaagatttgGAAAACGAACACAAAATTAAAA
TGTTACAAAAGGAGGTAAAAATAGCCGAGATGGAGAAAGTaatgaaagaa
aatgaagaaaccATACAGAAAATGAGAGCTGAAATGAAAACTGTTAATGA
GCAGGCAGTCAAAAAAGAAAGTGCCCGGCTGGATACTCCTGTGAAAGCAT
TAACCGACATTGATCGTATGGTATGGGGTGCCAATTATTTCATCCAAGGG
ATTTCACATGGTCCAAAGCTGTACGAATCATACGAGAAGTGGTACGAAAG
GATTTCATTGTTAATGGAGAATAAAAAGTTGTATGTCGCAACCGAATTCT
TGTTCAttagaaaaaagtttgataaacaTCATAAAGTTTTGCATTTTGTG
TCGaaaagaaaatatagcgcttatGTAGACTGTAGTGACGAGTTCAATAC
TGAAGGTTTAACTAAGGAACTGTATACAAATGATGGTGTTGATCTTTTTC
TACTCCACCCGAAAATTGATACTAAACACCTAAAATTCAACCGCAATTTT
AATGGCCATGATTATGAACGTTGGCAAGTTAAAAACGTTAATCTGGAGTT
TTATGATGATAATAACGACGCTATTGTTTTGGGGATACCTAAAATAAATG
CTGGGTGGctattttggtcaaattttacGCGTTTGAAATTTGAATCTAAG
AAGATCGTAAATTAAGAATTCTATAACCAGAATAAAATAATCAGATTTAC
CCTACAGATTCCTTCTATGTCCCTGAGCTAAACCTTCAGATCTTTTTGCC
TAAGCAAtttccaaaatcgagatatTCAAGTTACAAGTTTTCGACTATTA
GCAAAAAAACAATACATTAAATATACAAAAGCTATTTAAAACAATACAAC
TTTTCACGACGTAGTCTTTTTATTAATCAGTCATTTGCACCTTTAGTCCC
ATATTATGCCATTGTTACGATTTTACAGCTCATACATAATGGTCTCTAGG
TATttatttttaactgtttttagcttttcgttttgttttttttcaaaact
gtctTTACTGTAATTTTATTAGCCAATTATAgatttgttcttaaaatgtt
ttaaaatttttttcttgttgatAGATTTTTCCAATCTGATGATGGACATC
TTGTAGTGAAGGTCGAATAtactgtttttaaataaaaacaggaCGCTTAT
GG Run BLAST on NCBI transcript from alignment at sc0000141:101823..103874+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012162 ID=TCONS_00012162|Name=TCONS_00012162|organism=Clytia hemisphaerica|type=transcript|length=2052bp|location=Sequence derived from alignment at sc0000141:101823..103874+ (Clytia hemisphaerica)
tgatgttattttcaaaaacagtTCGGGCATTTGAGATGATTTAAATAAAT
CAACTACTTATTGCATTTTTTGATGCATTGAGTTTTTATTCGTCCTTGTT
TGTGTCTGTGTCTCTTTATGTTTGTTGATGCTGTTTAAGAAAAAATGAAT
CCTGAAGATAAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAATCCAAT
GGTGGAAATGGATAGTGGAGAGATTGTCAAACTgaaagaagaacatcaaa
aagaaattcaaaaactgACCTATGAATCAAAGATAGAGATGATGGAATCA
CAAATGAAAATCACGCagctagaaaaagaaaatcaaactttATCTCATCA
ATTTGAGATGTTCATACTAAAGAATTCTTATGAATCTCAATCAAGTCAAG
TTCAAGCTGATCAACAACTCCAAAAACAGAAAGACGAGCTCCAAAATAAG
TTAGTTGAAAAGGAGAAACAATTAGTAGCCAAAGAGCACGAAATGGTTTT
GTACAAGAAAGAACAagaaaatgaatggaaaatgaaaatgaaagatttgG
AAAACGAACACAAAATTAAAATGTTACAAAAGGAGGTAAAAATAGCCGAG
ATGGAGAAAGTaatgaaagaaaatgaagaaaccATACAGAAAATGAGAGC
TGAAATGAAAACTGTTAATGAGCAGGCAGTCAAAAAAGAAAGTGCCCGGC
TGGATACTCCTGNTCTCAATCAAGTCAAGTTCAAGCTGATCAACAACTCC
AAAAACAGAAAGACGAGCTCCAAAATAAGTTAGTTGAAAAGGAGAAACAA
TTAGTAGCCAAAGAGCACGAAATGGTTTTGTACAAGAAAGAACAagaaaa
tgaatggaaaatgaaaatgaaagatttgGAAAACGAACACAAAATTAAAA
TGTTACAAAAGGAGGTAAAAATAGCCGAGATGGAGAAAGTaatgaaagaa
aatgaagaaaccATACAGAAAATGAGAGCTGAAATGAAAACTGTTAATGA
GCAGGCAGTCAAAAAAGAAAGTGCCCGGCTGGATACTCCTGTGAAAGCAT
TAACCGACATTGATCGTATGGTATGGGGTGCCAATTATTTCATCCAAGGG
ATTTCACATGGTCCAAAGCTGTACGAATCATACGAGAAGTGGTACGAAAG
GATTTCATTGTTAATGGAGAATAAAAAGTTGTATGTCGCAACCGAATTCT
TGTTCAttagaaaaaagtttgataaacaTCATAAAGTTTTGCATTTTGTG
TCGaaaagaaaatatagcgcttatGTAGACTGTAGTGACGAGTTCAATAC
TGAAGGTTTAACTAAGGAACTGTATACAAATGATGGTGTTGATCTTTTTC
TACTCCACCCGAAAATTGATACTAAACACCTAAAATTCAACCGCAATTTT
AATGGCCATGATTATGAACGTTGGCAAGTTAAAAACGTTAATCTGGAGTT
TTATGATGATAATAACGACGCTATTGTTTTGGGGATACCTAAAATAAATG
CTGGGTGGctattttggtcaaattttacGCGTTTGAAATTTGAATCTAAG
AAGATCGTAAATTAAGAATTCTATAACCAGAATAAAATAATCAGATTTAC
CCTACAGATTCCTTCTATGTCCCTGAGCTAAACCTTCAGATCTTTTTGCC
TAAGCAAtttccaaaatcgagatatTCAAGTTACAAGTTTTCGACTATTA
GCAAAAAAACAATACATTAAATATACAAAAGCTATTTAAAACAATACAAC
TTTTCACGACGTAGTCTTTTTATTAATCAGTCATTTGCACCTTTAGTCCC
ATATTATGCCATTGTTACGATTTTACAGCTCATACATAATGGTCTCTAGG
TATttatttttaactgtttttagcttttcgttttgttttttttcaaaact
gtctTTACTGTAATTTTATTAGCCAATTATAgatttgttcttaaaatgtt
ttaaaatttttttcttgttgatAGATTTTTCCAATCTGATGATGGACATC
TTGTAGTGAAGGTCGAATAtactgtttttaaataaaaacaggaCGCTTAT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012162-exon-sc0000141-1491911889:101823..103874 | TCONS_00012162-exon-sc0000141-1491911889:101823..103874 | Clytia hemisphaerica | exon |
| TCONS_00012162-exon-sc0000141-1510915933:101823..103874 | TCONS_00012162-exon-sc0000141-1510915933:101823..103874 | Clytia hemisphaerica | exon |
| TCONS_00012162-exon-sc0000141-1575043694:101823..103874 | TCONS_00012162-exon-sc0000141-1575043694:101823..103874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:101823..103874 + |
Blast
The following BLAST results are available for this feature:
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