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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012157 ID=TCONS_00012157|Name=TCONS_00012157|organism=Clytia hemisphaerica|type=transcript|length=538bp
AAATTActtcaatttctttctttttacagcaaaaaataaataaaatgctC
GAGTTGTATTACAAAGATTGTGCTTTCGACCTTGAGTTGGCAAAAAATGA
TGCCCGCCTTATTTTGGACGAAAAGAAAGaggcaaaaacagaaaaaaacc
gGCAACGAAGACACCGacagaataaacaaaaaaaacttcATGCCCAGTGA
TAGCTTTGtcctttttccttcttttttacttttaattgaAGTTCTTAATC
GGTTCACattcaagattttgaattttctttcttcagtTGTTTATAATATT
ATATGAATCATTCTGTCGGTGTTTCCAATcacagtttttttctgtttttg
cctGTTGCTTCTCATCCAATAAATGTAGAGCATCGTTTTTTGCCAATTCC
CTAACAATAGCATGATCTTTGTAATAAGTTTCAAGTCTATTTTGTTTGCA
TGTTTTTAGACTAATTAAACATTCCTATATTACATTTATGAATAAAGTTA
AAATACTTTTCTTGTTATTCAACAGGTTTCTTTCCCAA Run BLAST on NCBI transcript from alignment at sc0000141:78849..80267+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012157 ID=TCONS_00012157|Name=TCONS_00012157|organism=Clytia hemisphaerica|type=transcript|length=1419bp|location=Sequence derived from alignment at sc0000141:78849..80267+ (Clytia hemisphaerica)
AAATTActtcaatttctttctttttacagcaaaaaataaataaaatgctC
GAGTTGTATTACAAAGATTGTGCTTTCGACCTTGAGTTGGCAAAAAATGA
TGCCCGCCTTATTTTGGACGAAAAGAAAGaggcaaaaacagaaaaaaacc
gGCAACGAAGACACCGacagaataaacaaaaaaaacttcatGAGCAAGAA
ATtgcagttttaaaacaaaaaaacaaggATTTAATGGACAAATTGAGCCT
GTCAAACCCAAAGGAAACAGAAGTAAGTATGGACATTGAGGATAAAGAAG
ACACCGATAAAACAAAGAACAAAACAACAGACAAGGACAAAAAGAAGGAC
ACAGAAACAAAGAACACTAAAACAAACAATAATTGTAAACgctggaaaaa
gaaaaatttcaagcaAAACCGTTACAAAAACATTACAGCAGCAAAGCAGA
ACAAAGCATCGTTACACCGCCATTACCCAGCCCGACGTACCCTTTTAAAT
AGTTTTCCAACCAATCAACCTTCCACCTTCAACCTTCAACCTCCAACCAT
CCATCAACCTCCAACCATCCTTCAACCTCCAACCATCTGTCAACCTCCAA
CCATCTGTCAAAGCTTACCATCCTTCCAACAGCaacaacatcaatttttt
caaactggCATTTTCAATTACCAACAACCAATGTATCCGGTACCTTTTCC
TGCTCATCTTCCTGTTTTCTCGCCAGTAACTTTACCTTTTTATCCCGCTT
AtagattttaacttttttgtttaatattttttgggTTGGTTTGTTCTGTC
TTGTTGCTGTTTTAATAagcttaaaataataaattcttgAGTTTTCGGGT
TGGTTTGTTCTGCATTGCTGCTGTTTTGAGCTTAAATAATAAattcttta
gtttttctttctgCCAATGTCCTCTTGTCAAATTAAGAAATGAATTCTGT
CCTTCTGTCcttgtcaaattttaaaaagactttgcttttaaatgttttgt
cCAGTAATAgatagaaaatgaaattttatcctTTTGTCCTTTGAATAAGT
AGAATTAATAAAAAGACTACATGCCCAGTGATAGCTTTGtcctttttcct
tcttttttacttttaattgaAGTTCTTAATCGGTTCACattcaagatttt
gaattttctttcttcagtTGTTTATAATATTATATGAATCATTCTGTCGG
TGTTTCCAATcacagtttttttctgtttttgcctGTTGCTTCTCATCCAA
TAAATGTAGAGCATCGTTTTTTGCCAATTCCCTAACAATAGCATGATCTT
TGTAATAAGTTTCAAGTCTATTTTGTTTGCATGTTTTTAGACTAATTAAA
CATTCCTATATTACATTTATGAATAAAGTTAAAATACTTTTCTTGTTATT
CAACAGGTTTCTTTCCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012157-exon-sc0000141-1491911889:78849..79037 | TCONS_00012157-exon-sc0000141-1491911889:78849..79037 | Clytia hemisphaerica | exon |
| TCONS_00012157-exon-sc0000141-1510915933:78849..79037 | TCONS_00012157-exon-sc0000141-1510915933:78849..79037 | Clytia hemisphaerica | exon |
| TCONS_00012157-exon-sc0000141-1575043694:78849..79037 | TCONS_00012157-exon-sc0000141-1575043694:78849..79037 | Clytia hemisphaerica | exon |
| TCONS_00012157-exon-sc0000141-1491911889:79919..80267 | TCONS_00012157-exon-sc0000141-1491911889:79919..80267 | Clytia hemisphaerica | exon |
| TCONS_00012157-exon-sc0000141-1510915933:79919..80267 | TCONS_00012157-exon-sc0000141-1510915933:79919..80267 | Clytia hemisphaerica | exon |
| TCONS_00012157-exon-sc0000141-1575043694:79919..80267 | TCONS_00012157-exon-sc0000141-1575043694:79919..80267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:78849..80267 + |
Blast
The following BLAST results are available for this feature:
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