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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012144 ID=TCONS_00012144|Name=TCONS_00012144|organism=Clytia hemisphaerica|type=transcript|length=3638bp
AAAGGATGAACTAATCAAATTGTTCAAAAGACTTGATACGAAAGTAATTA
ATCTTCTACGAGATCAACTCTTCTGTCTCTTCTTGGACCATTTTGACACC
AACACCTTATCATCAAATGGATTTATAATCTCGGAAGATGAGCCAAAAAG
CTGCCTAAAACGAAGATCAAATCTCCAATATGCTGTCCAGGGCATCTATA
ACATGGGCCTCAGCATATTCGAAAACAAAATAACAATTAAACTAGCTGCT
GATATACTGAAACACCCTATTCTTCACGATCAGACACAAAATGTTATTGA
CCTGAACAGCAGacttattttagaaaaaatgactGAACTTGTTAACAAAG
TAAACATCATGCAGAAAGAAAACATTGACCTGAAAACCCATATTGTAAAT
CTAGAGAGGAAGATGGAGATAGTCATACTCAGTGTCGCAAATCAGCAACA
ACTACAGGTACAGCATCAACTACCTACACCACCACCTCTACTGACTTCTA
CTATTAATACCGTTGACACGAACAGACAACCAATCCAACAAATAGAAAAT
GTACTCCTCAAGAATACCCCAGCAAAAGACAGCCATCCAGAAGACTTTAG
ACCAAATAAACCCCCAAATCCATCTCCAAACCGTGCAAAGGATATCGCAT
CAGAAAACAAGAACAAGAAAAGATCACCACCAGTCTTTGGGAGAAAGAAA
ACAAACTCCAAAGTAGTAGGACAAACCAAACCCTTTTCTCTCTTTGTGGG
AGGATTCAACCTGCGATACTCAATGGATGACATTCAACAAATTGTTCGAG
ATGAAATCGGTCTAAATGTCGTTGATGTCTCCCCAGTCAAACAAAATCCG
TACAACCAATCATGCAAGATAGATATTCGTAGTGAGGATAAGCAAAGGGC
CCTCGATCCAAGCTGCTGGTACCAAGGTCTTGTCGTAAAACCGTACCACC
CTCCAAGATCTCCCCAATATCGTACACATGACAGGCGGACTTACCAAGAG
CCACGAAACAACAGATACCACCGAAACCTTGACTATGACACCCATCCTGA
AGACTACCGACCAAACCAGTTTACAAATGAAATGAGAGATAATTATGAGA
ACTATAGAAATTTAGACTTTGACAGACACAATGGATACCACAACAAATAA
GATAATTACCTTAAActgcaatggtttcaaaacaaACACAGTTTACATTG
ACAAAATTATCAACTCAAATGATATTATATTTCTTACCGAACTCTGGATC
ACTCAATCTGAAAAGTATCTCCTACACGATTATAAAAAGGACTTCCATGT
ATTCTTTGCTCCTGCGAAACAAGGACACACTGGTCGGCCCTACGGTGGTA
CTGCCCTATTTCTCAGAAAAACATCAAACCATAAACCTGAACTCATCTTA
CAAGAAGACTTCACAACAATCATCAAAATAAACTATTCAGACACACCATT
GCTTATGATCGGTGTTTACCTTCAATGTATCGCAAACAAAAATGACTTCA
AAGACATATATGCATCACAATTGAATACCATCAGTGGCATTTTAAAGCAC
TTCGTTGATTCATCAAATTCGATTGTACTTGGTGACTTTTAATCATATCC
GTCATCTGAAGGATCAGAAAGAATTGCACAGTCCAATGCCCTATCACCCT
TTCTAGAGAACTTTTTATCAGTAAACAACCTCATACCAATCGACATAAGC
CATGGCTCTGGTCCATGCTACACATACAACCACCCTACACTTCCAAATCA
GTCATACATCGACCACATCTGCGTTTCGTCAAACTCCATAAACCAATTTT
CAGACACAGTCATTTCTGATCCAAACTTTCTGAACATCAGTGACCATTTA
CCAGTATCGACAGTTTACAAAGCAATAACAAACTCAGAATCCATACCACA
AGTCAAATACATCGAAGAAGATTTTGTACCAAGCTTCAtgtggaaaaatg
aaacattcttAAAAAGATACAAGTCATTATTGAATTCTATGACTTTTCAG
ACACTTGAATCCGAAAACATGGACTCCATTGAAATCCTTCAGAATGCTTT
AAAGTCATGTTCTCTGGAAGCCTATAACCAGCTCAAAAACGACTCAGATT
TCCATTCGATCAACAGGAAGCCATGGTGGACGACAGAGCTGTCAAAAAGT
CGAAAACTACTCCAAAGTACGTTCAATCAATGGCGCTCAACTAACTTCAA
TCGAGACCCCCATAATGTTCATTATCATCGATATCTTTTTGCTAGAAAAA
ACTTCAGATCCCTCGTCAAGAGATGTAAATCCCAATCCACAGTCGAACAT
TACATTAACATcgaaaaagtcaagaaaattaAACCAAAATCTTACTGGAG
TCAGATTCGATTAGCCAAATCTTCACCACAGAAACTATACACCATCAATA
ACAAAACCAATACTGAAGACATTACAACCGAATTCAAAAACCACTTCGAT
ACACTGCTCAATACACCAAGGACAGCACAGATCAACAATACTCGTACAAA
CGACCTCCTCGATAGTCTATTGTCTGATCTACAAGAAATGGATGAAATCG
ACTTTTTAGTAAACGAAAATGACTTACTAACTGCTATAAACAATCTAAAC
AAAGACAAGGCATACGACCCTTTTGGTATCAAAGCTGAACATTTTATCCA
CGGTTTTACACACCCTTCCGACCAGAATCTCTCATTTCTTTCACTAACCA
TAAACCGAATTCTAACCTCGAAACACTTTCCTGAATCACTGGCCACATCC
CACCTGGTCCCTATCATCAAATCCCACCGGAAACCAATCAGCGACCCGAA
CAACTACAGAGGCATCAGCTTAATCCCAATATTAACCAAATTAATCGAAC
AAGTAATTTTACAGAAATGCCCACAATTAAAGCATCACGCAGACCACCAG
TACGGTTTCTCATCAGACGGATCTACACTACATGCTGAATTCTTAATCAA
TGAAACTATTCAAAAATATAATACCCAAAATACCCCTGTATACATATGTA
GTCTGGATGCAGAGAAAGCCTTCGATTCGTGCAATTGGCTTGAACTCTTT
AACAAACTCAAATTGAAAAACATACTTCCAAATACGGTGCTACAATTTCT
TATAAAACTTTACAGTCATGGAGAAGCAAAAATCAAATACAACAGTAATA
TTTCCAAGCCATTCTCTCTATCTCAAGGAGTCAGACAGGGGTCAATCCTG
TCCCCATACCTATATAACATCTACACCGAGGATATCCTTCAGGAGATAAC
TAATCTTAACGTTGGAACCTTCTTAAACCCTAACATCAACACATCAATTA
TCGCCTTCGCTGATGACCTGATCCTCCTGAGTCCTAATCTAAAACATCTC
CAGAAAATGATATCTCTTTGTCAGGAAAAAGGCGGTAATATTGGCTTAAA
GTTCAATgatacaaaaacacaatttattGTATCTGGTAATTGCCCAATAG
ACAATCCCAGTATCTCAATGAATGACAAATCAATATCTCCCcaaaaaacc
ttaaaacatCTGGGTTTTTTATGGGACACTAAATCGAAGAAGATCACTCT
CGCTAAACACCAGGAAAATCGTATCCAAGAACTATGGGCCGTCACATCTT
CTCTCATCTCTAGTGGAGTCAGGAAAATGCATCCCAAC Run BLAST on NCBI protein sequence of TCONS_00012144-protein >TCONS_00012144-protein ID=TCONS_00012144-protein|Name=TCONS_00012144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MWKNETFLKRYKSLLNSMTFQTLESENMDSIEILQNALKSCSLEAYNQLK
NDSDFHSINRKPWWTTELSKSRKLLQSTFNQWRSTNFNRDPHNVHYHRYL
FARKNFRSLVKRCKSQSTVEHYINIEKVKKIKPKSYWSQIRLAKSSPQKL
YTINNKTNTEDITTEFKNHFDTLLNTPRTAQINNTRTNDLLDSLLSDLQE
MDEIDFLVNENDLLTAINNLNKDKAYDPFGIKAEHFIHGFTHPSDQNLSF
LSLTINRILTSKHFPESLATSHLVPIIKSHRKPISDPNNYRGISLIPILT
KLIEQVILQKCPQLKHHADHQYGFSSDGSTLHAEFLINETIQKYNTQNTP
VYICSLDAEKAFDSCNWLELFNKLKLKNILPNTVLQFLIKLYSHGEAKIK
YNSNISKPFSLSQGVRQGSILSPYLYNIYTEDILQEITNLNVGTFLNPNI
NTSIIAFADDLILLSPNLKHLQKMISLCQEKGGNIGLKFNDTKTQFIVSG
NCPIDNPSISMNDKSISPQKTLKHLGFLWDTKSKKITLAKHQENRIQELW
AVTSSLISSGVRKMHPN Run BLAST on NCBI transcript from alignment at sc0000137:170699..174336 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012144 ID=TCONS_00012144|Name=TCONS_00012144|organism=Clytia hemisphaerica|type=transcript|length=3638bp|location=Sequence derived from alignment at sc0000137:170699..174336 (Clytia hemisphaerica)
GTTGGGATGCATTTTCCTGACTCCACTAGAGATGAGAGAAGATGTGACGG
CCCATAGTTCTTGGATACGATTTTCCTGGTGTTTAGCGAGAGTGATCTTC
TTCGATTTAGTGTCCCATAAAAAACCCAGatgttttaaggttttttgGGG
AGATATTGATTTGTCATTCATTGAGATACTGGGATTGTCTATTGGGCAAT
TACCAGATACaataaattgtgtttttgtatcATTGAACTTTAAGCCAATA
TTACCGCCTTTTTCCTGACAAAGAGATATCATTTTCTGGAGATGTTTTAG
ATTAGGACTCAGGAGGATCAGGTCATCAGCGAAGGCGATAATTGATGTGT
TGATGTTAGGGTTTAAGAAGGTTCCAACGTTAAGATTAGTTATCTCCTGA
AGGATATCCTCGGTGTAGATGTTATATAGGTATGGGGACAGGATTGACCC
CTGTCTGACTCCTTGAGATAGAGAGAATGGCTTGGAAATATTACTGTTGT
ATTTGATTTTTGCTTCTCCATGACTGTAAAGTTTTATAAGAAATTGTAGC
ACCGTATTTGGAAGTATGTTTTTCAATTTGAGTTTGTTAAAGAGTTCAAG
CCAATTGCACGAATCGAAGGCTTTCTCTGCATCCAGACTACATATGTATA
CAGGGGTATTTTGGGTATTATATTTTTGAATAGTTTCATTGATTAAGAAT
TCAGCATGTAGTGTAGATCCGTCTGATGAGAAACCGTACTGGTGGTCTGC
GTGATGCTTTAATTGTGGGCATTTCTGTAAAATTACTTGTTCGATTAATT
TGGTTAATATTGGGATTAAGCTGATGCCTCTGTAGTTGTTCGGGTCGCTG
ATTGGTTTCCGGTGGGATTTGATGATAGGGACCAGGTGGGATGTGGCCAG
TGATTCAGGAAAGTGTTTCGAGGTTAGAATTCGGTTTATGGTTAGTGAAA
GAAATGAGAGATTCTGGTCGGAAGGGTGTGTAAAACCGTGGATAAAATGT
TCAGCTTTGATACCAAAAGGGTCGTATGCCTTGTCTTTGTTTAGATTGTT
TATAGCAGTTAGTAAGTCATTTTCGTTTACTAAAAAGTCGATTTCATCCA
TTTCTTGTAGATCAGACAATAGACTATCGAGGAGGTCGTTTGTACGAGTA
TTGTTGATCTGTGCTGTCCTTGGTGTATTGAGCAGTGTATCGAAGTGGTT
TTTGAATTCGGTTGTAATGTCTTCAGTATTGGTTTTGTTATTGATGGTGT
ATAGTTTCTGTGGTGAAGATTTGGCTAATCGAATCTGACTCCAGTAAGAT
TTTGGTTtaattttcttgactttttcgATGTTAATGTAATGTTCGACTGT
GGATTGGGATTTACATCTCTTGACGAGGGATCTGAAGTTTTTTCTAGCAA
AAAGATATCGATGATAATGAACATTATGGGGGTCTCGATTGAAGTTAGTT
GAGCGCCATTGATTGAACGTACTTTGGAGTAGTTTTCGACTTTTTGACAG
CTCTGTCGTCCACCATGGCTTCCTGTTGATCGAATGGAAATCTGAGTCGT
TTTTGAGCTGGTTATAGGCTTCCAGAGAACATGACTTTAAAGCATTCTGA
AGGATTTCAATGGAGTCCATGTTTTCGGATTCAAGTGTCTGAAAAGTCAT
AGAATTCAATAATGACTTGTATCTTTTTaagaatgtttcatttttccaca
TGAAGCTTGGTACAAAATCTTCTTCGATGTATTTGACTTGTGGTATGGAT
TCTGAGTTTGTTATTGCTTTGTAAACTGTCGATACTGGTAAATGGTCACT
GATGTTCAGAAAGTTTGGATCAGAAATGACTGTGTCTGAAAATTGGTTTA
TGGAGTTTGACGAAACGCAGATGTGGTCGATGTATGACTGATTTGGAAGT
GTAGGGTGGTTGTATGTGTAGCATGGACCAGAGCCATGGCTTATGTCGAT
TGGTATGAGGTTGTTTACTGATAAAAAGTTCTCTAGAAAGGGTGATAGGG
CATTGGACTGTGCAATTCTTTCTGATCCTTCAGATGACGGATATGATTAA
AAGTCACCAAGTACAATCGAATTTGATGAATCAACGAAGTGCTTTAAAAT
GCCACTGATGGTATTCAATTGTGATGCATATATGTCTTTGAAGTCATTTT
TGTTTGCGATACATTGAAGGTAAACACCGATCATAAGCAATGGTGTGTCT
GAATAGTTTATTTTGATGATTGTTGTGAAGTCTTCTTGTAAGATGAGTTC
AGGTTTATGGTTTGATGTTTTTCTGAGAAATAGGGCAGTACCACCGTAGG
GCCGACCAGTGTGTCCTTGTTTCGCAGGAGCAAAGAATACATGGAAGTCC
TTTTTATAATCGTGTAGGAGATACTTTTCAGATTGAGTGATCCAGAGTTC
GGTAAGAAATATAATATCATTTGAGTTGATAATTTTGTCAATGTAAACTG
TGTttgttttgaaaccattgcagTTTAAGGTAATTATCTTATTTGTTGTG
GTATCCATTGTGTCTGTCAAAGTCTAAATTTCTATAGTTCTCATAATTAT
CTCTCATTTCATTTGTAAACTGGTTTGGTCGGTAGTCTTCAGGATGGGTG
TCATAGTCAAGGTTTCGGTGGTATCTGTTGTTTCGTGGCTCTTGGTAAGT
CCGCCTGTCATGTGTACGATATTGGGGAGATCTTGGAGGGTGGTACGGTT
TTACGACAAGACCTTGGTACCAGCAGCTTGGATCGAGGGCCCTTTGCTTA
TCCTCACTACGAATATCTATCTTGCATGATTGGTTGTACGGATTTTGTTT
GACTGGGGAGACATCAACGACATTTAGACCGATTTCATCTCGAACAATTT
GTTGAATGTCATCCATTGAGTATCGCAGGTTGAATCCTCCCACAAAGAGA
GAAAAGGGTTTGGTTTGTCCTACTACTTTGGAGTTTGTTTTCTTTCTCCC
AAAGACTGGTGGTGATCTTTTCTTGTTCTTGTTTTCTGATGCGATATCCT
TTGCACGGTTTGGAGATGGATTTGGGGGTTTATTTGGTCTAAAGTCTTCT
GGATGGCTGTCTTTTGCTGGGGTATTCTTGAGGAGTACATTTTCTATTTG
TTGGATTGGTTGTCTGTTCGTGTCAACGGTATTAATAGTAGAAGTCAGTA
GAGGTGGTGGTGTAGGTAGTTGATGCTGTACCTGTAGTTGTTGCTGATTT
GCGACACTGAGTATGACTATCTCCATCTTCCTCTCTAGATTTACAATATG
GGTTTTCAGGTCAATGTTTTCTTTCTGCATGATGTTTACTTTGTTAACAA
GTTCagtcattttttctaaaataagtCTGCTGTTCAGGTCAATAACATTT
TGTGTCTGATCGTGAAGAATAGGGTGTTTCAGTATATCAGCAGCTAGTTT
AATTGTTATTTTGTTTTCGAATATGCTGAGGCCCATGTTATAGATGCCCT
GGACAGCATATTGGAGATTTGATCTTCGTTTTAGGCAGCTTTTTGGCTCA
TCTTCCGAGATTATAAATCCATTTGATGATAAGGTGTTGGTGTCAAAATG
GTCCAAGAAGAGACAGAAGAGTTGATCTCGTAGAAGATTAATTACTTTCG
TATCAAGTCTTTTGAACAATTTGATTAGTTCATCCTTT Coding sequence (CDS) from alignment at sc0000137:170699..174336 >TCONS_00012144 ID=TCONS_00012144|Name=TCONS_00012144|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at sc0000137:170699..174336 (Clytia hemisphaerica)
GTTGGGATGCATTTTCCTGACTCCACTAGAGATGAGAGAAGATGTGACGG
CCCATAGTTCTTGGATACGATTTTCCTGGTGTTTAGCGAGAGTGATCTTC
TTCGATTTAGTGTCCCATAAAAAACCCAGatgttttaaggttttttgGGG
AGATATTGATTTGTCATTCATTGAGATACTGGGATTGTCTATTGGGCAAT
TACCAGATACaataaattgtgtttttgtatcATTGAACTTTAAGCCAATA
TTACCGCCTTTTTCCTGACAAAGAGATATCATTTTCTGGAGATGTTTTAG
ATTAGGACTCAGGAGGATCAGGTCATCAGCGAAGGCGATAATTGATGTGT
TGATGTTAGGGTTTAAGAAGGTTCCAACGTTAAGATTAGTTATCTCCTGA
AGGATATCCTCGGTGTAGATGTTATATAGGTATGGGGACAGGATTGACCC
CTGTCTGACTCCTTGAGATAGAGAGAATGGCTTGGAAATATTACTGTTGT
ATTTGATTTTTGCTTCTCCATGACTGTAAAGTTTTATAAGAAATTGTAGC
ACCGTATTTGGAAGTATGTTTTTCAATTTGAGTTTGTTAAAGAGTTCAAG
CCAATTGCACGAATCGAAGGCTTTCTCTGCATCCAGACTACATATGTATA
CAGGGGTATTTTGGGTATTATATTTTTGAATAGTTTCATTGATTAAGAAT
TCAGCATGTAGTGTAGATCCGTCTGATGAGAAACCGTACTGGTGGTCTGC
GTGATGCTTTAATTGTGGGCATTTCTGTAAAATTACTTGTTCGATTAATT
TGGTTAATATTGGGATTAAGCTGATGCCTCTGTAGTTGTTCGGGTCGCTG
ATTGGTTTCCGGTGGGATTTGATGATAGGGACCAGGTGGGATGTGGCCAG
TGATTCAGGAAAGTGTTTCGAGGTTAGAATTCGGTTTATGGTTAGTGAAA
GAAATGAGAGATTCTGGTCGGAAGGGTGTGTAAAACCGTGGATAAAATGT
TCAGCTTTGATACCAAAAGGGTCGTATGCCTTGTCTTTGTTTAGATTGTT
TATAGCAGTTAGTAAGTCATTTTCGTTTACTAAAAAGTCGATTTCATCCA
TTTCTTGTAGATCAGACAATAGACTATCGAGGAGGTCGTTTGTACGAGTA
TTGTTGATCTGTGCTGTCCTTGGTGTATTGAGCAGTGTATCGAAGTGGTT
TTTGAATTCGGTTGTAATGTCTTCAGTATTGGTTTTGTTATTGATGGTGT
ATAGTTTCTGTGGTGAAGATTTGGCTAATCGAATCTGACTCCAGTAAGAT
TTTGGTTtaattttcttgactttttcgATGTTAATGTAATGTTCGACTGT
GGATTGGGATTTACATCTCTTGACGAGGGATCTGAAGTTTTTTCTAGCAA
AAAGATATCGATGATAATGAACATTATGGGGGTCTCGATTGAAGTTAGTT
GAGCGCCATTGATTGAACGTACTTTGGAGTAGTTTTCGACTTTTTGACAG
CTCTGTCGTCCACCATGGCTTCCTGTTGATCGAATGGAAATCTGAGTCGT
TTTTGAGCTGGTTATAGGCTTCCAGAGAACATGACTTTAAAGCATTCTGA
AGGATTTCAATGGAGTCCATGTTTTCGGATTCAAGTGTCTGAAAAGTCAT
AGAATTCAATAATGACTTGTATCTTTTTaagaatgtttcatttttccaca
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012144-exon-sc0000137-1491911889:170699..174336 | TCONS_00012144-exon-sc0000137-1491911889:170699..174336 | Clytia hemisphaerica | exon |
| TCONS_00012144-exon-sc0000137-1510915933:170699..174336 | TCONS_00012144-exon-sc0000137-1510915933:170699..174336 | Clytia hemisphaerica | exon |
| TCONS_00012144-exon-sc0000137-1575043694:170699..174336 | TCONS_00012144-exon-sc0000137-1575043694:170699..174336 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:170699..174336 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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