TCONS_00012141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012141
Unique NameTCONS_00012141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012141 ID=TCONS_00012141|Name=TCONS_00012141|organism=Clytia hemisphaerica|type=transcript|length=499bp
cttctgGTAGCCAGGTGACTTCAAAAAAGTTCACCCGCTCTCACTCATTT
TGTTttcgtaataaaaagaaagtcattattgtgaactttgaacatgcttt
aAATGGAGGTATTTCCACTAACTGAAATATGCACATAATCAAATTAACTC
CAGAGTTTTCCGGAGCggctaaaaaaacaatttttctatCCGGAAAGTTA
CTGAGCTCTTTGGTGGCGGTTCAGTTAGTTTTCATATGATTAGCATAGCA
AACGCTATCGTTACTATATCAGAGATATCTTGCTCAGGAACACCGGAATA
GCTTCTGGTGTTCCTGAGGAGCATGAAAAAACAGCGCTTTTTGCTCCGGA
CCGGGAGGGTCCTAATTAATTAACATCAAACATCAATGAAAAACTCTATC
AAAACtgccaaaacaaaaataaaatccagTCCACACCACTacaaactaaa
aaaatatttaaaatctaataaaatTCAATTACTATATAagtaattaaaa
Run BLAST on NCBI

transcript from alignment at sc0000137:118575..119073

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012141 ID=TCONS_00012141|Name=TCONS_00012141|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000137:118575..119073 (Clytia hemisphaerica)
ttttaattactTATATAGTAATTGAattttattagattttaaatattttt
ttagtttgtAGTGGTGTGGActggattttatttttgttttggcaGTTTTG
ATAGAGTTTTTCATTGATGTTTGATGTTAATTAATTAGGACCCTCCCGGT
CCGGAGCAAAAAGCGCTGTTTTTTCATGCTCCTCAGGAACACCAGAAGCT
ATTCCGGTGTTCCTGAGCAAGATATCTCTGATATAGTAACGATAGCGTTT
GCTATGCTAATCATATGAAAACTAACTGAACCGCCACCAAAGAGCTCAGT
AACTTTCCGGatagaaaaattgtttttttagccGCTCCGGAAAACTCTGG
AGTTAATTTGATTATGTGCATATTTCAGTTAGTGGAAATACCTCCATTta
aagcatgttcaaagttcacaataatgactttctttttattacgaaAACAA
AATGAGTGAGAGCGGGTGAACTTTTTTGAAGTCACCTGGCTACcagaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006829XLOC_006829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012141-exon-sc0000137-1491911889:118575..119073TCONS_00012141-exon-sc0000137-1491911889:118575..119073Clytia hemisphaericaexon
TCONS_00012141-exon-sc0000137-1510915933:118575..119073TCONS_00012141-exon-sc0000137-1510915933:118575..119073Clytia hemisphaericaexon
TCONS_00012141-exon-sc0000137-1575043694:118575..119073TCONS_00012141-exon-sc0000137-1575043694:118575..119073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:118575..119073 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54987	1.87492	0.554065	1.26896	1.07141	0.286042	0.507682	1.26168	0.736225	0.25539	0.371831	0.570331	0.387571	0.0970041	0.555736	0.392438	0.642866	0.282393	0.520188	0.136085	0.709694	0.692328	0.280538	0	0.404266	0.134284	0.335497	0.179026	0	0.138343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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