TCONS_00012133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012133
Unique NameTCONS_00012133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012133 ID=TCONS_00012133|Name=TCONS_00012133|organism=Clytia hemisphaerica|type=transcript|length=544bp
TCTGACGTTTGATGTCCCGCGAGTGGTTTCAGTGGATCTTATCGCTCGCC
TCTGTTTTTGCAGGACGCACCAAATGATTAAGTTCGATACGGAAAGCGTG
attgaaatcgaaaaaataccTAAAACAAGAGCCCTCCTCATTACGGGGAT
GCGTAACGCAAGGGTACCTGTTGACCCattgtttcttaaaaaactaaata
aaatgGATGTAAGCGCGACCGATGGGCTGATCATAAGAAAAAGGATCTGG
ATGCAGGTTGGAAGAGTCTGGTAGCGAAATGGCCAGCGAATCGAAATTGC
GCGGTCTATTGTTAGAAAGACCAACGATACGTTCCCGTGAGCATAAAACG
CGTAATTGATGTAAGTTAGGGCGTTGGTTTTGCTGAAAGTAAGTAAAAAC
AAGGTGAATCCACCCACTATGTGACCAATGTTGATGTTGATTAAAAGCTG
GTTGTATCGCTTGCGACGTAATTCTGGAACACAAAGCAAAAGTACCAATA
TGATGGAATGAAGGATACAATTGACTAGTCCCAGTCCACCTCGT
Run BLAST on NCBI

protein sequence of TCONS_00012133-protein

>TCONS_00012133-protein ID=TCONS_00012133-protein|Name=TCONS_00012133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
RGGLGLVNCILHSIILVLLLCVPELRRKRYNQLLININIGHIVGGFTLFL
LTFSKTNALTYINYAFYAHGNVSLVFLTIDRAISIRWPFRYQTLPTCIQI
LFLMISPSVALTSILFSFLRNNGSTGTLALRIPVMRRALVLGIFSISITL
SVSNLIIWCVLQKQRRAIRSTETTRGTSNVR
Run BLAST on NCBI

transcript from alignment at sc0000137:3944..4487

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012133 ID=TCONS_00012133|Name=TCONS_00012133|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000137:3944..4487 (Clytia hemisphaerica)
ACGAGGTGGACTGGGACTAGTCAATTGTATCCTTCATTCCATCATATTGG
TACTTTTGCTTTGTGTTCCAGAATTACGTCGCAAGCGATACAACCAGCTT
TTAATCAACATCAACATTGGTCACATAGTGGGTGGATTCACCTTGTTTTT
ACTTACTTTCAGCAAAACCAACGCCCTAACTTACATCAATTACGCGTTTT
ATGCTCACGGGAACGTATCGTTGGTCTTTCTAACAATAGACCGCGCAATT
TCGATTCGCTGGCCATTTCGCTACCAGACTCTTCCAACCTGCATCCAGAT
CCTTTTTCTTATGATCAGCCCATCGGTCGCGCTTACATCcattttattta
gttttttaagaaacaatGGGTCAACAGGTACCCTTGCGTTACGCATCCCC
GTAATGAGGAGGGCTCTTGTTTTAggtattttttcgatttcaatCACGCT
TTCCGTATCGAACTTAATCATTTGGTGCGTCCTGCAAAAACAGAGGCGAG
CGATAAGATCCACTGAAACCACTCGCGGGACATCAAACGTCAGA

Coding sequence (CDS) from alignment at sc0000137:3944..4487

>TCONS_00012133 ID=TCONS_00012133|Name=TCONS_00012133|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000137:3944..4487 (Clytia hemisphaerica)
CGAGGTGGACTGGGACTAGTCAATTGTATCCTTCATTCCATCATATTGGT
ACTTTTGCTTTGTGTTCCAGAATTACGTCGCAAGCGATACAACCAGCTTT
TAATCAACATCAACATTGGTCACATAGTGGGTGGATTCACCTTGTTTTTA
CTTACTTTCAGCAAAACCAACGCCCTAACTTACATCAATTACGCGTTTTA
TGCTCACGGGAACGTATCGTTGGTCTTTCTAACAATAGACCGCGCAATTT
CGATTCGCTGGCCATTTCGCTACCAGACTCTTCCAACCTGCATCCAGATC
CTTTTTCTTATGATCAGCCCATCGGTCGCGCTTACATCcattttatttag
ttttttaagaaacaatGGGTCAACAGGTACCCTTGCGTTACGCATCCCCG
TAATGAGGAGGGCTCTTGTTTTAggtattttttcgatttcaatCACGCTT
TCCGTATCGAACTTAATCATTTGGTGCGTCCTGCAAAAACAGAGGCGAGC
GATAAGATCCACTGAAACCACTCGCGGGACATCAAACGTCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006821XLOC_006821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012133-exon-sc0000137-1491911889:3944..4487TCONS_00012133-exon-sc0000137-1491911889:3944..4487Clytia hemisphaericaexon
TCONS_00012133-exon-sc0000137-1510915933:3944..4487TCONS_00012133-exon-sc0000137-1510915933:3944..4487Clytia hemisphaericaexon
TCONS_00012133-exon-sc0000137-1575043694:3944..4487TCONS_00012133-exon-sc0000137-1575043694:3944..4487Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012133-proteinTCONS_00012133-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:3944..4487 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211807	0	0.479638	0.351938	0.285634	0.112856	0	0.382403	1.2494	0.552709	0.321884	0.493719	0	0.146291	0.180407	0.129069	0.159003	0.0814865	0	0	0	0	0	0	0	0.202956	0.145215	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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