|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012130 ID=TCONS_00012130|Name=TCONS_00012130|organism=Clytia hemisphaerica|type=transcript|length=1180bp
GGAAGAGCCAAAGAAAAACCCAGAATTTCTTTGCAGTGTATGCATGACAC
CTTACAAAGTTCAAGACaaaaagtttGTAAAGTCCACTGATCGTTTTATA
CAAAACAAAATTAGGGTTCATTGCATACAAAAAGATTGTCCGTGGATTGG
TTCCATCAAGGATTATGAGgtcCACGTTAAGAAATGTGACTATGGCAAAA
TGAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGTTCGATGCGCAA
AATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTGCT
TTTAAACGTCGTAAATGTGTTGGCGAAAGAGAGACTAGAAAATCGAACAC
TCTtcgaaaaccaaaacaaaacaatcgaaCGTTTGGAAGAAGGAATGGAC
AAACTTGAGGTAGAAAACAAGGACCTGATGAACAAATATGAAACCCAATC
CAATCTTCTCATAAAAAATACCAAGGAAATCGAATCGTTGAAAAGTGAGA
ATGTAAATTTAAACCAGATGCTTCAACAACAAAATGACAATGTTTTGAAT
AATCATCAAAAACTTCAATTATTAGAAAAGGAAAACCCTAAAGACATTGA
AAAGACTTTACACGAACAGAGAAAAGATGTTGagaatttgaaaacatttg
CCAAGACCGTCGGTAAATTACATGGAACATTGAGTGACGCTAATGTTAGA
GAGAAAATTCAAACACATTTGTACCTTTACGATAAAGATTATATAGAAAA
CGAGAAGGTAAAACAATGGAATGATTTTGTCCAACAAATCAATACAAATG
AAGATTTCAATGGAGATTGTGATTACCTTCAATCAATGAAAAACGTTGTG
AATCATTATCAAGGTACTGTATACTCAAAGTCTTGGAATACAAGGTTATT
ACAGTTCGCATTGACGATTAATCATGGAGTGATAATAGGCAACCATATAA
AACTTTGTCCACATTACATAGTGGAATACATCTCCGTTATAAATCACAAC
ACCTACGAAGATTTTAACAGGACAACTCAAGACATGAAATGGACAAAACA
TTCACATGGAGTAGCAAGTTATTCGAGTATACATCAAGGTTCACGATGTC
TCAATGTTGCTGTCAGGTTACCATTATGGTGTGAAAACGTTTACATTCTT
CATTGGGACGAAGaagacaaaaagttgaaa Run BLAST on NCBI protein sequence of TCONS_00012130-protein >TCONS_00012130-protein ID=TCONS_00012130-protein|Name=TCONS_00012130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
EEPKKNPEFLCSVCMTPYKVQDKKFVKSTDRFIQNKIRVHCIQKDCPWIG
SIKDYEVHVKKCDYGKMKCPYFELGCLNTFDAQNLPKHNAMNRQIHEALL
LNVVNVLAKERLENRTLFENQNKTIERLEEGMDKLEVENKDLMNKYETQS
NLLIKNTKEIESLKSENVNLNQMLQQQNDNVLNNHQKLQLLEKENPKDIE
KTLHEQRKDVENLKTFAKTVGKLHGTLSDANVREKIQTHLYLYDKDYIEN
EKVKQWNDFVQQINTNEDFNGDCDYLQSMKNVVNHYQGTVYSKSWNTRLL
QFALTINHGVIIGNHIKLCPHYIVEYISVINHNTYEDFNRTTQDMKWTKH
SHGVASYSSIHQGSRCLNVAVRLPLWCENVYILHWDEEDKKLK Run BLAST on NCBI transcript from alignment at sc0000137:475831..478156- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012130 ID=TCONS_00012130|Name=TCONS_00012130|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at sc0000137:475831..478156- (Clytia hemisphaerica)
GGAAGAGCCAAAGAAAAACCCAGAATTTCTTTGCAGTGTATGCATGACAC
CTTACAAAGTTCAAGACGTGAGTTATCTATTTTTCATTCAACCTCTTATT
ACAATTCGAGTAGTATTTTTATTGCATGCAGAAGAACTGGTATAAGTCAT
ATAGATTTCGATACACTCTCGGGTGCCTTGATTTGAAAAAATGCAAATTT
AGAGATCTCTCAAATTCAAAACGCTCCTACAAAAGGGTCGGCGAGATAGA
TGGACTGTGTGATGATAATTTTCTTTCTGTGTCGGTATTTGAAGAAAAGT
GACGGCGTTTAAGTGTCAAACATTCATGTGTTGACAAAATTATAATTTCT
GCAATTCTTTACATCTAAAGTTGATAAGAGTAAGAGTTGCTACCCACTAA
ACAAGTTCTTTATTTTCATTTTTCAGAAAAAGTTTGTAAAGTCCACTGAT
CGTTTTATACAAAACAAAATTAGGGTTCATTGCATACAAAAAGATTGTCC
GTGGATTGGTTCCATCAAGGATTATGAGGTAAAGTCACAAGCACACCCTT
TTTTTGTAAAAACCATTTTGTGGGGGCTCGGCTGTCTTATTTTTCGCACT
TTGAGCCTCAAAAAACTGTTTATCTTCTCTTTCTTTTTTTGCGAAAACTT
CAGCACAACTTCCTTTTTCTAATTTTTTGACGTTTTTGAGCCTCGGTGTT
CTTAAAAAGTTGTCTATTTTAGGGCTTATTTTATTAAAGTCGAACAAGCT
TCCACTGTCTATGTAAGTGAAAAGTATAAAGCCCGCCCCTTGACACTGAG
TGAAAAGGTCGTATCGTCATCCAAAAATCTTTTGAGGTACGATTGCTATA
ACAGTGAACATCAGGGAACGGGAGGTTCTATCTTAAAAGACCCATGCTAT
GACACAAACGAATTAAGACTTATCTCCTTTTTTATTTTTTAGGTCCACGT
TAAGAAATGTGACTATGGCAAAATGAAATGCCCATATTTCGAGTTGGGTT
GTCTCAATACGGTAAGTTTTCTTTCATCAATAAAAAGAAAATCTTTTCAA
ATGAAGATTCTCGGAAGAAATGATCTTATTTATACTTCATACTTTCTGCA
ATTTTTATAAAGAATTAGAAATCATTTTTGGTAAAGTGTGGCCTCCTTGC
TTATTTGAACTTCTGTTAATCGAATATTTCCATAAATCGAACTAATTTTC
CCTGTCAAGGAAAAACCTTCGTATTCCATAATTCGAATCTCTGACTAATT
AGATTTCTTTGTTGTGTTCAAATTAGCGAAAGTCAATTGTATAAAGAACA
CAGGATTTGAATAAGTTGTTTTCACTTCAATTTCTCCAGTTTTTATCATG
TTCGCAAGCTCTTATACATTATGTTTGTTTTTAGTTCGATGCGCAAAATT
TACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTA
AACGTCGTAAATGTGTTGGCGAAAGAGAGACTAGAAAATCGAACACTCTT
CGAAAACCAAAACAAAACAATCGAACGTTTGGAAGAAGGAATGGACAAAC
TTGAGGTAGAAAACAAGGACCTGATGAACAAATATGAAACCCAATCCAAT
CTTCTCATAAAAAATACCAAGGAAATCGAATCGTTGAAAAGTGAGAATGT
AAATTTAAACCAGATGCTTCAACAACAAAATGACAATGTTTTGAATAATC
ATCAAAAACTTCAATTATTAGAAAAGGAAAACCCTAAAGACATTGAAAAG
ACTTTACACGAACAGAGAAAAGATGTTGAGAATTTGAAAACATTTGCCAA
GACCGTCGGTAAATTACATGGAACATTGAGTGACGCTAATGTTAGAGAGA
AAATTCAAACACATTTGTACCTTTACGATAAAGATTATATAGAAAACGAG
AAGGTAAAACAATGGAATGATTTTGTCCAACAAATCAATACAAATGAAGA
TTTCAATGGAGATTGTGATTACCTTCAATCAATGAAAAACGTTGTGAATC
ATTATCAAGGTACTGTATACTCAAAGTCTTGGAATACAAGGTTATTACAG
TTCGCATTGACGATTAATCATGGAGTGATAATAGGCAACCATATAAAACT
TTGTCCACATTACATAGTGGAATACATCTCCGTTATAAATCACAACACCT
ACGAAGATTTTAACAGGACAACTCAAGACATGAAATGGACAAAACATTCA
CATGGAGTAGCAAGTTATTCGAGTATACATCAAGGTTCACGATGTCTCAA
TGTTGCTGTCAGGTTACCATTATGGTGTGAAAACGTTTACATTCTTCATT
GGGACGAAGAAGACAAAAAGTTGAAA Coding sequence (CDS) from alignment at sc0000137:475831..478156- >TCONS_00012130 ID=TCONS_00012130|Name=TCONS_00012130|organism=Clytia hemisphaerica|type=CDS|length=4716bp|location=Sequence derived from alignment at sc0000137:475831..478156- (Clytia hemisphaerica)
TTCGATGCGCAAAATTTACCAAAACACAACGCAATGAATCGACAAATCCA
CGAAGCTTTGCTTTTAAACGTCGTAAATGTGTTGGCGAAAGAGAGACTAG
AAAATCGAACACTCTTCGAAAACCAAAACAAAACAATCGAACGTTTGGAA
GAAGGAATGGACAAACTTGAGGTAGAAAACAAGGACCTGATGAACAAATA
TGAAACCCAATCCAATCTTCTCATAAAAAATACCAAGGAAATCGAATCGT
TGAAAAGTGAGAATGTAAATTTAAACCAGATGCTTCAACAACAAAATGAC
AATGTTTTGAATAATCATCAAAAACTTCAATTATTAGAAAAGGAAAACCC
TAAAGACATTGAAAAGACTTTACACGAACAGAGAAAAGATGTTGAGAATT
TGAAAACATTTGCCAAGACCGTCGGTAAATTACATGGAACATTGAGTGAC
GCTAATGTTAGAGAGAAAATTCAAACACATTTGTACCTTTACGATAAAGA
TTATATAGAAAACGAGAAGGTAAAACAATGGAATGATTTTGTCCAACAAA
TCAATACAAATGAAGATTTCAATGGAGATTGTGATTACCTTCAATCAATG
AAAAACGTTGTGAATCATTATCAAGGTACTGTATACTCAAAGTCTTGGAA
TACAAGGTTATTACAGTTCGCATTGACGATTAATCATGGAGTGATAATAG
GCAACCATATAAAACTTTGTCCACATTACATAGTGGAATACATCTCCGTT
ATAAATCACAACACCTACGAAGATTTTAACAGGACAACTCAAGACATGAA
ATGGACAAAACATTCACATGGAGTAGCAAGTTATTCGAGTATACATCAAG
GTTCACGATGTCTCAATGTTGCTGTCAGGTTACCATTATGGTGTGAAAAC
GTTTACATTCTTCATTGGGACGAAGAAGACAAAAAGTTGAAAGTCCACGT
TAAGAAATGTGACTATGGCAAAATGAAATGCCCATATTTCGAGTTGGGTT
GTCTCAATACGAAAAAGTTTGTAAAGTCCACTGATCGTTTTATACAAAAC
AAAATTAGGGTTCATTGCATACAAAAAGATTGTCCGTGGATTGGTTCCAT
CAAGGATTATGAGGAAGAGCCAAAGAAAAACCCAGAATTTCTTTGCAGTG
TATGCATGACACCTTACAAAGTTCAAGACTTCGATGCGCAAAATTTACCA
AAACACAACGCAATGAATCGACAAATCCACGAAGCTTTGCTTTTAAACGT
CGTAAATGTGTTGGCGAAAGAGAGACTAGAAAATCGAACACTCTTCGAAA
ACCAAAACAAAACAATCGAACGTTTGGAAGAAGGAATGGACAAACTTGAG
GTAGAAAACAAGGACCTGATGAACAAATATGAAACCCAATCCAATCTTCT
CATAAAAAATACCAAGGAAATCGAATCGTTGAAAAGTGAGAATGTAAATT
TAAACCAGATGCTTCAACAACAAAATGACAATGTTTTGAATAATCATCAA
AAACTTCAATTATTAGAAAAGGAAAACCCTAAAGACATTGAAAAGACTTT
ACACGAACAGAGAAAAGATGTTGAGAATTTGAAAACATTTGCCAAGACCG
TCGGTAAATTACATGGAACATTGAGTGACGCTAATGTTAGAGAGAAAATT
CAAACACATTTGTACCTTTACGATAAAGATTATATAGAAAACGAGAAGGT
AAAACAATGGAATGATTTTGTCCAACAAATCAATACAAATGAAGATTTCA
ATGGAGATTGTGATTACCTTCAATCAATGAAAAACGTTGTGAATCATTAT
CAAGGTACTGTATACTCAAAGTCTTGGAATACAAGGTTATTACAGTTCGC
ATTGACGATTAATCATGGAGTGATAATAGGCAACCATATAAAACTTTGTC
CACATTACATAGTGGAATACATCTCCGTTATAAATCACAACACCTACGAA
GATTTTAACAGGACAACTCAAGACATGAAATGGACAAAACATTCACATGG
AGTAGCAAGTTATTCGAGTATACATCAAGGTTCACGATGTCTCAATGTTG
CTGTCAGGTTACCATTATGGTGTGAAAACGTTTACATTCTTCATTGGGAC
GAAGAAGACAAAAAGTTGAAAGTCCACGTTAAGAAATGTGACTATGGCAA
AATGAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGAAAAAGTTTG
TAAAGTCCACTGATCGTTTTATACAAAACAAAATTAGGGTTCATTGCATA
CAAAAAGATTGTCCGTGGATTGGTTCCATCAAGGATTATGAGGAAGAGCC
AAAGAAAAACCCAGAATTTCTTTGCAGTGTATGCATGACACCTTACAAAG
TTCAAGACTTCGATGCGCAAAATTTACCAAAACACAACGCAATGAATCGA
CAAATCCACGAAGCTTTGCTTTTAAACGTCGTAAATGTGTTGGCGAAAGA
GAGACTAGAAAATCGAACACTCTTCGAAAACCAAAACAAAACAATCGAAC
GTTTGGAAGAAGGAATGGACAAACTTGAGGTAGAAAACAAGGACCTGATG
AACAAATATGAAACCCAATCCAATCTTCTCATAAAAAATACCAAGGAAAT
CGAATCGTTGAAAAGTGAGAATGTAAATTTAAACCAGATGCTTCAACAAC
AAAATGACAATGTTTTGAATAATCATCAAAAACTTCAATTATTAGAAAAG
GAAAACCCTAAAGACATTGAAAAGACTTTACACGAACAGAGAAAAGATGT
TGAGAATTTGAAAACATTTGCCAAGACCGTCGGTAAATTACATGGAACAT
TGAGTGACGCTAATGTTAGAGAGAAAATTCAAACACATTTGTACCTTTAC
GATAAAGATTATATAGAAAACGAGAAGGTAAAACAATGGAATGATTTTGT
CCAACAAATCAATACAAATGAAGATTTCAATGGAGATTGTGATTACCTTC
AATCAATGAAAAACGTTGTGAATCATTATCAAGGTACTGTATACTCAAAG
TCTTGGAATACAAGGTTATTACAGTTCGCATTGACGATTAATCATGGAGT
GATAATAGGCAACCATATAAAACTTTGTCCACATTACATAGTGGAATACA
TCTCCGTTATAAATCACAACACCTACGAAGATTTTAACAGGACAACTCAA
GACATGAAATGGACAAAACATTCACATGGAGTAGCAAGTTATTCGAGTAT
ACATCAAGGTTCACGATGTCTCAATGTTGCTGTCAGGTTACCATTATGGT
GTGAAAACGTTTACATTCTTCATTGGGACGAAGAAGACAAAAAGTTGAAA
GTCCACGTTAAGAAATGTGACTATGGCAAAATGAAATGCCCATATTTCGA
GTTGGGTTGTCTCAATACGAAAAAGTTTGTAAAGTCCACTGATCGTTTTA
TACAAAACAAAATTAGGGTTCATTGCATACAAAAAGATTGTCCGTGGATT
GGTTCCATCAAGGATTATGAGGAAGAGCCAAAGAAAAACCCAGAATTTCT
TTGCAGTGTATGCATGACACCTTACAAAGTTCAAGACTTCGATGCGCAAA
ATTTACCAAAACACAACGCAATGAATCGACAAATCCACGAAGCTTTGCTT
TTAAACGTCGTAAATGTGTTGGCGAAAGAGAGACTAGAAAATCGAACACT
CTTCGAAAACCAAAACAAAACAATCGAACGTTTGGAAGAAGGAATGGACA
AACTTGAGGTAGAAAACAAGGACCTGATGAACAAATATGAAACCCAATCC
AATCTTCTCATAAAAAATACCAAGGAAATCGAATCGTTGAAAAGTGAGAA
TGTAAATTTAAACCAGATGCTTCAACAACAAAATGACAATGTTTTGAATA
ATCATCAAAAACTTCAATTATTAGAAAAGGAAAACCCTAAAGACATTGAA
AAGACTTTACACGAACAGAGAAAAGATGTTGAGAATTTGAAAACATTTGC
CAAGACCGTCGGTAAATTACATGGAACATTGAGTGACGCTAATGTTAGAG
AGAAAATTCAAACACATTTGTACCTTTACGATAAAGATTATATAGAAAAC
GAGAAGGTAAAACAATGGAATGATTTTGTCCAACAAATCAATACAAATGA
AGATTTCAATGGAGATTGTGATTACCTTCAATCAATGAAAAACGTTGTGA
ATCATTATCAAGGTACTGTATACTCAAAGTCTTGGAATACAAGGTTATTA
CAGTTCGCATTGACGATTAATCATGGAGTGATAATAGGCAACCATATAAA
ACTTTGTCCACATTACATAGTGGAATACATCTCCGTTATAAATCACAACA
CCTACGAAGATTTTAACAGGACAACTCAAGACATGAAATGGACAAAACAT
TCACATGGAGTAGCAAGTTATTCGAGTATACATCAAGGTTCACGATGTCT
CAATGTTGCTGTCAGGTTACCATTATGGTGTGAAAACGTTTACATTCTTC
ATTGGGACGAAGAAGACAAAAAGTTGAAAGTCCACGTTAAGAAATGTGAC
TATGGCAAAATGAAATGCCCATATTTCGAGTTGGGTTGTCTCAATACGAA
AAAGTTTGTAAAGTCCACTGATCGTTTTATACAAAACAAAATTAGGGTTC
ATTGCATACAAAAAGATTGTCCGTGGATTGGTTCCATCAAGGATTATGAG
GAAGAGCCAAAGAAAAACCCAGAATTTCTTTGCAGTGTATGCATGACACC
TTACAAAGTTCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012130-exon-sc0000137-1575043694:478090..478156 | TCONS_00012130-exon-sc0000137-1575043694:478090..478156 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1575043694:477629..477730 | TCONS_00012130-exon-sc0000137-1575043694:477629..477730 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1575043694:477146..477214 | TCONS_00012130-exon-sc0000137-1575043694:477146..477214 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1575043694:475831..476772 | TCONS_00012130-exon-sc0000137-1575043694:475831..476772 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1510915933:478090..478156 | TCONS_00012130-exon-sc0000137-1510915933:478090..478156 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1510915933:477629..477730 | TCONS_00012130-exon-sc0000137-1510915933:477629..477730 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1510915933:477146..477214 | TCONS_00012130-exon-sc0000137-1510915933:477146..477214 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1510915933:475831..476772 | TCONS_00012130-exon-sc0000137-1510915933:475831..476772 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1491911889:478090..478156 | TCONS_00012130-exon-sc0000137-1491911889:478090..478156 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1491911889:477629..477730 | TCONS_00012130-exon-sc0000137-1491911889:477629..477730 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1491911889:477146..477214 | TCONS_00012130-exon-sc0000137-1491911889:477146..477214 | Clytia hemisphaerica | exon |
| TCONS_00012130-exon-sc0000137-1491911889:475831..476772 | TCONS_00012130-exon-sc0000137-1491911889:475831..476772 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:475831..478156 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
