TCONS_00012100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012100
Unique NameTCONS_00012100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012100 ID=TCONS_00012100|Name=TCONS_00012100|organism=Clytia hemisphaerica|type=transcript|length=2489bp
gttgtttttcaaatttattcgtGTTTTCACACATGGCTGAAACTCCTCGA
CACTCAAAAGTGCAGGTGTGGCAACTTGGATTGCTCTGATGAACTCGGCT
TTTACTTACTTTAGTCGACAGAAACATTTTCAGGCAAGGAAAAGTTCAAA
AGCATTCATTTTCTTTGTACTAAGTAACAAAAATTAGCAAAGATGTCTGC
AAATCCACAAAATGCCGATCACCAAacccaaaaaatcacaatcCAAAAGA
AAACAGTCAAAATCACACACGACAGAGATAACTTGGAATACCCAAAAGCT
GTAAAGAAGGAAGGAAAATATGTTTTACCATGGAAGACAGATAAGACTGC
CCCGGATGGGTGGAATAacttcaaattctttttcactCCAGACAGCAGCA
AAGTCCCTTCAGATGCCaaaTTGGATGAAGAGCCATTAATGCAAATGATG
AAATCTGAcccaaaaagaattgaaaaccCACCAGAAAATGGCATCAGAGT
CACTTGGTTGGGACACGCCAGCACGTTATTTCAACTCGATAACGTCAATG
TTTTAGTTAACCCAAATTTCAATCAACGTGGAATTAAATATTATCATCCA
GGAGACAACAAGCGATACAGGCAACCAGTATACTCTGTTGCACAACTCCC
TAGAAttgatgttgtttttattaCTAATACTCATTTTGATTATCTGGACT
TATCATCTGTACGTCAATTAAATGAGAGATTTGGCGATATGTTATTGTGG
TATGTCCCAATGGGTGCTGCAGACTGGATGACAAAAGCTGGATGCGGAAA
TGTTGTTGAATTAGACTGGTGGAAAGAAGATGAAGTTGAATTCATTGACG
AAACAAAGaTTGAAGAAAACGAAGATGTTACCACAACGGTCTTCAACATT
GCTTGCACACCATCACAAAATTACCATGACAGAACCTTTGATGATGACAA
CGCAGTCTTGTGGTGCAGTTGGGTTATCATGTCACCAAGATACAAAGTTT
TCGTCTCAGGAGCTACTGGATACTGTAACGTTTTCAAATCTATTGGCCGC
AAATACGGACCCTTCCACATGGCAGCTCTACCCATTGGATGTTATGAGCC
AGACTGGAAATTCGGATACGGAAACGTAACACCTGAAGAATCTGTTCAAA
TTCATCAAGACCTTTTGGCTATGTGCTCTTTGGCGTTATCATGGGGAACC
TTTACCATTGCAAATGAGTATTACCTTGAACCACCACAACGTTTGAATGA
AGAGCTCCGCAAACAAGGATTATCTGAAATGCAATTCTTCCTCTTGAAAC
ACGGAGAATCACGATTAATCGAGATCAAAGAAGCCGACAAAGAGGGCGAG
GAAGATAAAGAAAACGAGAAAACTGTCGCACTCGATGTCCCAGTCATCGA
AAATGGAGACGCAAACGCCCCAGAAGAAACGTCGCCCGAAGACCAATCAG
TGCTTGATGACCTCGTCAACCAACTAGTCGATGAAACACCGGCTGACGAA
GACGAAAAGGAAAAATCGGGATCCGCTTCCGATTAGAATCCCGATTCTCT
AGACATCGGGTTTTAAATGTTACTCCGATTTTCTTATCTTTGCACGGTAT
GTCTACAAAAAAACCGCAGAGACAAAATGATTATTTTGACGCTTGCAAAA
CATCAGACGTGATCTTATACTTAAATGTGCAGAGTGGAAATAAAGACACT
ATTTATGCATAGTACGACTGAACACAAATTTGCGATCACACGAACCTCAT
TACACACCACTTCGAcgcaaacaaactttttttaaatacttcgctaattt
tgtaacaaaatatggaataaaatttattatttttctgggtaaaaaaacaa
atttagggtttttctttttggttttttaATGTCACtctattttttatatt
aatttatttttgtttttttgttttgttttttgtttatcttacattttttt
tctacTATTTCTTCATTTATCAAAACATACACCGCCTTTATTCATCCGGC
CGCCCGCCAAAGTGTTGCGCTCGCCCATGGTCTTTTCCGCCAACCTTGCA
AACAAACTTACACACCAATTTTTTTAACTAACATTAATTTTGTAATTAGG
TTTACTTTTTTCGTTTACCACAAGTGTGTTTTTCTTATACCTTAGGTTAT
ATTCAGAATTCTTGAGTTTTTTTGggcaaataaaattgaaaactcGAATT
TCTTGGTTTTTCATTATCACTTCCACTTGCTCTGTAACCATTTTCCTTTT
CTAACCAGCAATTTTGTGCTGTGTTTTCTGTTTGGCCAGATTTAGCATAA
ATTTTCGTATAACTAGGTCATGCGACCTTTCGCAATccttttaaaacttt
tcctttaggtttttttgaaaaatctctttctttttcattttttatatatt
tgcTCCTGCTTTACTAAATAAATTCTTTTACGTAAATTTACTCACGCCGA
ATttcgaagaaaaagaaatttaattctATGATAGATATT
Run BLAST on NCBI

transcript from alignment at sc0000137:365972..371265+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012100 ID=TCONS_00012100|Name=TCONS_00012100|organism=Clytia hemisphaerica|type=transcript|length=5294bp|location=Sequence derived from alignment at sc0000137:365972..371265+ (Clytia hemisphaerica)
gttgtttttcaaatttattcgtGTTTTCACACATGGCTGAAACTCCTCGA
CACTCAAAAGTGCAGGTGTGGCAACTTGGATTGCTCTGATGAACTCGGCT
TTTACTTACTTTAGTCGACAGAAACATTTTCAGGCAAGGAAAAGTTCAAA
AGCATTCATTTTCTTTGGTAAGTTCGAGGGAGAAACATTATCTCCTGAAA
AAgtattcaaagcaatttttgttcactcatttttattgcaaattttgacc
atttcttCATGCTGAGGTTATCTTTAAAACTTTTATGAGGTGTGTTCACG
TTTGAATTTGATCCTGCCTCGAGTTatgaaaacttaatttttgaatCGAT
TAAGGAGAAAATCACTTAGGGAATACATTTTTGGTTTTCATGTTTCCAAA
AGTAGCTTTTTGTTTATCGCTCTACTCTGTGAGACACTTACTTGATTTAC
ATTCACTTGGTCTGACATTGAGAAAATATTTGATTGGTTTCTCTTTCCGT
ATTATGAAATGTTATATTTAAATAAAGCTGTACTTCTTTTAGATTGCATA
TAATGTATAATAGTTGTTAATCTTTCTGTGGAGTTTGAAGCCTTTTCCTG
GTTTATACATTTCATTTTGCAGCTTGTCtgaacttatttttattttttct
tgatttaatgTTACTTGTTTTTTGACCTGTTACATGACTTTTAGCTCTCA
gagcttttttctttatttgagTAAACATTAAATTACAGTTGTTAGAAATA
TCAGGCTTTGGAAATATATCTGCTCATTTTTTTAACTCTTGTAATTATTT
TACAACCAGTACTAAGTAACAAAAATTAGCAAAGATGTCTGCAAATCCAC
AAAATGCCGATCACCAAacccaaaaaatcacaatcCAAAAGAAAACAGTC
AAAATCACACACGACAGAGATAACTTGGAATACCCAAAAGCTGTAAAGAA
GGAAGGAAAATATGTTTTACCATGGAAGACAGATAAGACTGCCCCGGATG
GGTGGAATAacttcaaattctttttcactCCAGACAGCAGCAAAGTCCCT
TCAGATGCCGTAAGAATGATAATTATTTTAGTTTCAATTGACCTAGCTGC
TAGAAGTCAGAAGAACAGGTTctcaaatgaagaaaaaaatacaaatacaa
tTACCAAAGAGTCGATCAGTGTTTTGAGCCATTTCTTCAATCTACATTTC
TTCATGTTGATGAATATTCATCAACATTACATCAGTCTTAGTATCAGTCC
TATGTAGAAAGATTTCTGCAATTCTATAATTACCTTTCTCTGTATATACA
CTCTTTTTACgctcattttttttttgttttaagaaaTTGGATGAAGAGCC
ATTAATGCAAATGATGAAATCTGAcccaaaaagaattgaaaaccCACCAG
AAAATGGCATCAGAGTCACTTGGTTGGGACACGCCAGCACGTTATTTCAA
CTCGATAACGTCAATGTTTTAGTTAACCCAAATTTCAATCAACGTGGAAT
TAAATATTATCATCCAGGAGACAACAAGCGATACAGGCAACCAGTATACT
CTGTTGCACAACTCCCTAGAAttgatgttgtttttattaCTAATACTCAT
TTTGATTATCTGGACTTATCATCTGTACGTCAATTAAATGAGAGATTTGG
CGATATGTTATTGTGGTATGTCCCAATGGGTGCTGCAGACTGGATGACAA
AAGCTGGATGCGGAAATGTTGTTGAATTAGACTGGTGGAAAGAAGATGAA
GTTGAATTCATTGACGAAACAAAGGTTTGCATTTTATCATCAACAGTAAA
TTGTCTACATAGATTACCAAGGGATTGGGATAAAATTTGCCACcaagaga
aattgaattttttgttcaaaacagTACATTGTCTAGAGAGACTGCTAATA
GTAAGGGAAATatttagtaagtaagtaagtatttatttatttacctttta
gtAAAATATCTGAGAAGAGTAAGGAGGCTTTGTTCTAATTTGGAAGAGTC
AGTATGGTTCAATGTCACTatatttttaaacttaaaaataaaatgaatat
gTTTGCCATAAATCCTCTTAGCTTTTGCACTCAACAAAACGTGTGTTCAG
GTCATTGGTCGAtgcaattaaataaataaaGCCTAGTGAGGGGTGTGCTT
TTGAAAAGTAAATAGTTGTAACTAGGTGACAAGACAAAGAAAAAGCTTTC
TCATTATCAAAACACAAAAGCAATCACCAATCATTATTGAGATCATTAAA
TGAAGTGTCTAGCATGTTGATCTAATTTATTATTCATTCAAAACTAGAAA
GGGATAATTAAAGAGGGATTAGATAATGCAGTTATTTTTTCCTTGTGTTT
CCTTAACTCGGTGGGTGTGACAAATTGTTGTCATCAGACAAAGCAGAGAA
TTACCTGAAGGAGCCAGCTCTTATCCTCGGCTAGATCTTTCTCTCTGATC
CTCCTCTTTCAATTCTAAGAGTCTGTAATTCTCAAATTTCTTTCTTATTC
CGAATTCccaataatgaaataaaaaaatttaatttttctgatttttcaga
TTGAAGAAAACGAAGATGTTACCACAACGGTCTTCAACATTGCTTGCACA
CCATCACAAAATTACCATGACAGAACCTTTGATGATGACAACGCAGTCTT
GTGGTGCAGTTGGGTTATCATGTCACCAAGATACAAAGTTTTCGTCTCAG
GAGCTACTGGATACTGTAACGTTTTCAAATCTATTGGCCGCAAATACGGA
CCCTTCCACATGGCAGCTCTACCCATTGGATGTTATGAGCCAGACTGGAA
ATTCGGATACGGAAACGTAACACCTGAAGAATCTGTTCAAATTCATCAAG
ACCTTTTGGCTATGTGCTCTTTGGCGTTATCATGGGGAACCTTTACCATT
GCAAATGAGGTAAGCATCAAAAATTATTCTTGAATTTTCTTGTTAGGAAT
ATTGTCTCTAGCTGTTGAGCTGTGTTAAGTGCACCTTGGAATACGGTTTG
TTTTGAAATCGATGATTGTTAAGGGTCATAGGTCTATTGTTGTTTGAACC
TTGTTAGAACACGTAATGTGTATCTTTGAACCTTGGTAATGAGAAAAGAC
ATTGTTTGAGTGAAAGATTTTCTATATTGCTGTTTGTTTTGACAGCAAAC
AGAGAGctctttattttttctaacgTCGTATATTTCTAGTTATGTTTTGT
GTCAAAGGAAAACTTCCTGACAGGAAAGATTGTAATTTGATCTGTAAAAT
GTAATATATTATGACAAGATTGATTTAACCCTTTTTGGTTTTGACCAATT
AAAATATCACTGGAACGCCATGTTTCTGCATGTTTTGATACTTTCATTCG
CAAAGGAGAAACATCCTCTGAATCAAAAGACATCTTTTTCGTATCTTTCA
AAAATTCCATTTATTCTGACCTGGGATATTTCTTCTTATTAAAAGTGATC
AAAAGAGGAATGAACATGTTTTGATCGGGTGTTTCATTCATGTGGTAGAT
TTATTTTCCAACTTTGataacaaatcaaaacattctcTCAATTAAACTTA
GTTTTATAATCCCATCCCTGTTCGAGAAACCTTTTTGCTATAGAACCTCG
AATATTAATCCAATTTAGAGAAACTTTAACCTGATTTTATGTCACCCCAA
AGATCACGGAtgagtttatttatttttctatccTTTGTCGTGACTTTAAA
ACGACTTAGTGCACGTGGCGCGTGCAGATTGGACACGCGAGattttaata
caaaaataacatGTTTAGATGTAAGAACTTTGGTGTTTTTATCTCTCCCT
CCTTGTAACgttattagtgaggttaagtaaattggtaaaatcacgacgac
gaacgaacatctaacaggctagtgagtttcaaccaatcaaatttcgtatt
ttcactagcctattacatttttcgtccgtcgtcgtgattatcctgatatg
cttaacctcagtattgAGGGTTTCAGGAAAAACTTGTTTCAATCtgactt
attttattttttttgactttcagTATTACCTTGAACCACCACAACGTTTG
AATGAAGAGCTCCGCAAACAAGGATTATCTGAAATGCAATTCTTCCTCTT
GAAACACGGAGAATCACGATTAATCGAGATCAAAGAAGCCGACAAAGAGG
GCGAGGAAGATAAAGAAAACGAGAAAACTGTCGCACTCGATGTCCCAGTC
ATCGAAAATGGAGACGCAAACGCCCCAGAAGAAACGTCGCCCGAAGACCA
ATCAGTGCTTGATGACCTCGTCAACCAACTAGTCGATGAAACACCGGCTG
ACGAAGACGAAAAGGAAAAATCGGGATCCGCTTCCGATTAGAATCCCGAT
TCTCTAGACATCGGGTTTTAAATGTTACTCCGATTTTCTTATCTTTGCAC
GGTATGTCTACAAAAAAACCGCAGAGACAAAATGATTATTTTGACGCTTG
CAAAACATCAGACGTGATCTTATACTTAAATGTGCAGAGTGGAAATAAAG
ACACTATTTATGCATAGTACGACTGAACACAAATTTGCGATCACACGAAC
CTCATTACACACCACTTCGAcgcaaacaaactttttttaaatacttcgct
aattttgtaacaaaatatggaataaaatttattatttttctgggtaaaaa
aacaaatttagggtttttctttttggttttttaATGTCACtctatttttt
atattaatttatttttgtttttttgttttgttttttgtttatcttacatt
ttttttctacTATTTCTTCATTTATCAAAACATACACCGCCTTTATTCAT
CCGGCCGCCCGCCAAAGTGTTGCGCTCGCCCATGGTCTTTTCCGCCAACC
TTGCAAACAAACTTACACACCAATTTTTTTAACTAACATTAATTTTGTAA
TTAGGTTTACTTTTTTCGTTTACCACAAGTGTGTTTTTCTTATACCTTAG
GTTATATTCAGAATTCTTGAGTTTTTTTGggcaaataaaattgaaaactc
GAATTTCTTGGTTTTTCATTATCACTTCCACTTGCTCTGTAACCATTTTC
CTTTTCTAACCAGCAATTTTGTGCTGTGTTTTCTGTTTGGCCAGATTTAG
CATAAATTTTCGTATAACTAGGTCATGCGACCTTTCGCAATccttttaaa
acttttcctttaggtttttttgaaaaatctctttctttttcattttttat
atatttgcTCCTGCTTTACTAAATAAATTCTTTTACGTAAATTTACTCAC
GCCGAATttcgaagaaaaagaaatttaattctATGATAGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006804XLOC_006804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012100-exon-sc0000137-1491911889:365972..366138TCONS_00012100-exon-sc0000137-1491911889:365972..366138Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1510915933:365972..366138TCONS_00012100-exon-sc0000137-1510915933:365972..366138Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1575043694:365972..366138TCONS_00012100-exon-sc0000137-1575043694:365972..366138Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1491911889:366781..367030TCONS_00012100-exon-sc0000137-1491911889:366781..367030Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1510915933:366781..367030TCONS_00012100-exon-sc0000137-1510915933:366781..367030Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1575043694:366781..367030TCONS_00012100-exon-sc0000137-1575043694:366781..367030Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1491911889:367305..367745TCONS_00012100-exon-sc0000137-1491911889:367305..367745Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1510915933:367305..367745TCONS_00012100-exon-sc0000137-1510915933:367305..367745Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1575043694:367305..367745TCONS_00012100-exon-sc0000137-1575043694:367305..367745Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1491911889:368521..368880TCONS_00012100-exon-sc0000137-1491911889:368521..368880Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1510915933:368521..368880TCONS_00012100-exon-sc0000137-1510915933:368521..368880Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1575043694:368521..368880TCONS_00012100-exon-sc0000137-1575043694:368521..368880Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1491911889:369995..371265TCONS_00012100-exon-sc0000137-1491911889:369995..371265Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1510915933:369995..371265TCONS_00012100-exon-sc0000137-1510915933:369995..371265Clytia hemisphaericaexon
TCONS_00012100-exon-sc0000137-1575043694:369995..371265TCONS_00012100-exon-sc0000137-1575043694:369995..371265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:365972..371265 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1098.99	1111.87	1628.99	1643.22	3480.25	2779.4	3954.54	4524.55	1695.28	2605.33	1328.61	1008.83	596.543	556.427	766.981	937.249	294.819	260.049	392.978	889.974	90.9086	100.873	377.245	350.432	122.726	160.413	484.569	364.593	325.955	298.726
Blast
[Close]
BLAST of TCONS_00012100 vs. Swiss-Prot (Human)
Match: NAPEP (N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D OS=Homo sapiens GN=NAPEPLD PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 2.284e-89
Identity = 157/344 (45.64%), Postives = 217/344 (63.08%), Query Frame = 1 
Query:  307 KEGKYVLPWKTDKTAPDGWNNFKFFFT-PDSSKVPSDAK-LDEE-PLMQMMKSDPKRIENPPENGIR-----VTWLGHASTLFQLDNVNVLVNPNFNQRGIKYYHPGDNKRYRQPVYSVAQLPRIDVVFITNTHFDYLDLSSVRQLNERFGDMLLWYVPMGAADWMTKAGCGNVVELDWWKEDEVEFIDETKIEENEDVTTTVFNIACTPSQNYHDRTFDDDNAVLWCSWVIMSPRYKVFVSGATGYCNVFKSIGRKYGPFHMAALPIGCYEPDWKFGYGNVTPEESVQIHQDLLAMCSLALSWGTFTIANEYYLEPPQRLNEELRKQGLSEMQFFLLKHGESR 1314
            K+G++V PW T K  P   N  ++     D S VPS  + LD+E P+++     P  I NP E G+R     VTWLGHA+ + ++D +  L +P F+ R     + G  KR+R+   ++++LP ID V I++ H+D+LD +SV  LNERFG+ L W+VP+G  DWM K GC NV+ELDWW+E+ V            D  T VF    TPSQ++  RT  DDN VLW SW ++ P  + F +G TGYC  F+ IG+++GPF +AA+PIG YEP W   Y +V PEE+V+IH D+    S+A+ WGTF +ANE+YLEPP +LNE L + GL+   FF+LKHGESR
Sbjct:   61 KDGRFVNPWPTWKN-PSIPNVLRWLIMEKDHSSVPSSKEELDKELPVLK-----PYFITNPEEAGVREAGLRVTWLGHATVMVEMDELIFLTDPIFSSRASPSQYMGP-KRFRRSPCTISELPPIDAVLISHNHYDHLDYNSVIALNERFGNELRWFVPLGLLDWMQKCGCENVIELDWWEENCVP---------GHDKVTFVF----TPSQHWCKRTLMDDNKVLWGSWSVLGPWNRFFFAGDTGYCPAFEEIGKRFGPFDLAAIPIGAYEPRWFMKYQHVDPEEAVRIHTDVQTKKSMAIHWGTFALANEHYLEPPVKLNEALERYGLNAEDFFVLKHGESR 384
The following BLAST results are available for this feature:
BLAST of TCONS_00012100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAPEP2.284e-8945.64N-acyl-phosphatidylethanolamine-hydrolyzing phosph... [more]
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