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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012099 ID=TCONS_00012099|Name=TCONS_00012099|organism=Clytia hemisphaerica|type=transcript|length=1351bp
ACCGATCTCTGCGAGGGAAAGCCACACATTGCTGAAAAGCTGGAACGTCT
ACGATGGTGTGTTACCGAAGGTCTGGACTCAAAGTACTCCATCACGGGGC
TCGAACAAACCAAAAAATTCTTCAGCCCTTTTGGAACACCTGTTTCCATG
CACTCTACTCCCTTCATGGGCAACATGCGGCCGCCGGGCGTTCCTCCGAT
GCGTGGCGGTGGGCGGTCACGTGGAACGGGTGGCAAACAAATGGTTCATG
GAAGCGGTGGTACCCTGCATGTTGCTGGCGTCCCAGTCGCACATTGGGGT
GGAAATAAAGCAGGCGTTGGCTACTCGAAAAACGCCCCTTCCGTGCTCGT
CGGTGGTCCCAATTCAGTCGATCTTCCAAGCAGTCACAAACGTGGCCGAG
GTGGGCGTGGACGCCCTTATGGTCGTGGTGGTAGAGGCAGTTACCATAAC
AAACAAAATCGACAAAATATAGCAAACAAtgcaccaccaccaccaccacc
ccCATCTGTCGGTCGTGGCCTCTTAGAAACGCCTGTCATCTCACCATGGC
AACAGGGGTTCGGTTATGAAGAAGTGCAAAACGCCAACTTTAAACGTTAC
ATGAAGGGCGTGCAGAAGGTGGAAGAGGTGCGATCAAACATTAGCAAGCT
CCAACACCAGCGACAAGTATACAGCAACCGTACGCGTTATCAACACAACC
AGCAGCAAcagcagcaacaacaacaacagaaatTCGACACTTCTCCAACG
CCCCGACAGCCGTTACAACACAACAGCTACTACTCTCAACAACCCGTTAA
TTTCAACTCGCCACGAGGCCCAGCTACTGGCTCTTCACCATCGGCTAACG
GCATTTCATCGCCTAGCAACGGGTTCCATCACCATAACAACAAGCCTGAC
ACTTACGGTTTCAACAACAAGAATATGTGGGTTGGCAAAGGCCGAGGGAT
GTCCGGTGGAACCGGGTTTTCGCCGACCAGTCCGAATTACAACGCATCGT
TTTCGTCCGCACGAGGTGCTTCGAGTTCGACGCGCGGCCACACTCGCGGT
GGGTACCGATCACAACATCAACAGCTCAGTCATGGTCGTGGTAACTGGAT
GCCAAGTAACGTGGAATGAgtaattttatttgatttttgttttttttttt
aacgatTGTTTTCTTCCCCCATATTTtagtaaattcattttttgatacCC
CACGGtagattttcaaaatagatcttcaaaaattttttttttaacttttt
gggctcgtttttttttcagtcattCGAAATTTCTTAAAATCCATCAATTA
TATAGCTATGAACGTGTCTTTGAACTAGGTAGACATTTGACTTATTTCGC
C Run BLAST on NCBI transcript from alignment at sc0000137:359280..362010+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012099 ID=TCONS_00012099|Name=TCONS_00012099|organism=Clytia hemisphaerica|type=transcript|length=2731bp|location=Sequence derived from alignment at sc0000137:359280..362010+ (Clytia hemisphaerica)
ACCGATCTCTGCGAGGGAAAGGTTTGTAAAGAAATTTGTGTacacgtttt
gttttttttaagaaactagttttaccaagcagcctcaatgtttcttaaga
aatcggccttttgagccttaaatgtttcttacatgtttctaaaNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttctcagcctcagcatgtttcttagatgtttcttagtttttaggcat
tctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaaagacgtg
taccCTTATCGCTAACCTCTTTAACTGCTAAGCTTTATCTTTTTCGAAAT
TGGTAGGTACCCACAAAGAAGCCATTTGGCTTCCGTACATAGAGGAtaga
ggatatagtgtccgggggtagtgaaaaatttacaaaatttgcccTGTCTG
CTCCcagtaaacttgctctgtttggggatAATACGGTTGAATACGGTACA
GTAGgcgaaaagttttcaaaaatgaattatATTCAAAATACAGGGTGTCC
TTAACAGAGAATAAATAGTCTTCGACATTTGAAATCCTCTTTTCACGAAA
GTAATGTCTTTAAAATTTCttggaagggccattcgcgaaagtttatgctc
gtgaaagtttgtactCCTAAAGTGATTGTTCAGTTTATTGGTGTTTAAAC
TGTTTTCCAGCCAGAAATTTCTCTGGATAGCCGATCTTTTCATAAGAAAC
TGATTGGCAAACTTTTAATCCAACAATTCTAATTCTATCcaaactttttt
ctttacagCCACACATTGCTGAAAAGCTGGAACGTCTACGATGGTGTGTT
ACCGAAGGTCTGGACTCAAAGTACTCCATCACGGGGCTCGAACAAACCAA
AAAATTCTTCAGCCCTTTTGGAACACCTGTTTCCATGCACTCTACTCCCT
TCATGGGCAACATGCGGCCGCCGGGCGTTCCTCCGATGCGTGGCGGTGGG
CGGTCACGTGGAACGGGTGGCAAACAAATGGTTCATGGAAGCGGTGGTAC
CCTGCATGTAAGTTCCTCTTAGTTTTAAGTAAGGAATAAGGAGTCGCTGA
TTTTCATTGCACTCTCTTTTTGTGGATTCGCCTACCAAAGTCATTTTCTT
CACTTCCATATCTTGCAGGCTTTTTTGCATGCCCTTTACGCGCCCGGTTA
TCAGACGCTGCCCCTCtttgaaattactaaaatattggtaaaaacagtct
ttttagtggaaaaacactggaaaaacatTGTACATAAGCCTTCACTTTTA
AAAACAAGGCGAGATTTCTGTTGATTTTTTCGTTAAGCAATTATTCATTT
TACTTTTTGAGGACCGCTATTTAACACTCTTTCATTTAGCTTCCCTCACA
CGTTGAAGGTTTTAAACTTTACACTTTCTGGGATTACAAAATTGGGGAAA
TTCATTTCAActtgataatattttcaaactttttgattttgaatctGTAG
GTTGCTGGCGTCCCAGTCGCACATTGGGGTGGAAATAAAGCAGGCGTTGG
CTACTCGAAAAACGCCCCTTCCGTGCTCGTCGGTGGTCCCAATTCAGTCG
ATCTTCCAAGCAGTCACAAACGTGGCCGAGGTGGGCGTGGACGCCCTTAT
GGTCGTGGTGGTAGAGGCAGTTACCATAACAAACAAAATCGACAAAATAT
AGCAAACAAtgcaccaccaccaccaccaccccCATCTGTCGGTCGTGGCC
TCTTAGAAACGCCTGTCATCTCACCATGGCAACAGGGGTTCGGTTATGAA
GAAGTGCAAAACGCCAACTTTAAACGTTACATGAAGGGCGTGCAGAAGGT
GGAAGAGGTGCGATCAAACATTAGCAAGCTCCAACACCAGCGACAAGTAT
ACAGCAACCGTACGCGTTATCAACACAACCAGCAGCAAcagcagcaacaa
caacaacagaaatTCGACACTTCTCCAACGCCCCGACAGCCGTTACAACA
CAACAGCTACTACTCTCAACAACCCGTTAATTTCAACTCGCCACGAGGCC
CAGCTACTGGCTCTTCACCATCGGCTAACGGCATTTCATCGCCTAGCAAC
GGGTTCCATCACCATAACAACAAGCCTGACACTTACGGTTTCAACAACAA
GAATATGTGGGTTGGCAAAGGCCGAGGGATGTCCGGTGGAACCGGGTTTT
CGCCGACCAGTCCGAATTACAACGCATCGTTTTCGTCCGCACGAGGTGCT
TCGAGTTCGACGCGCGGCCACACTCGCGGTGGGTACCGATCACAACATCA
ACAGCTCAGTCATGGTCGTGGTAACTGGATGCCAAGTAACGTGGAATGAg
taattttatttgatttttgtttttttttttaacgatTGTTTTCTTCCCCC
ATATTTtagtaaattcattttttgatacCCCACGGtagattttcaaaata
gatcttcaaaaattttttttttaactttttgggctcgtttttttttcagt
cattCGAAATTTCTTAAAATCCATCAATTATATAGCTATGAACGTGTCTT
TGAACTAGGTAGACATTTGACTTATTTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012099-exon-sc0000137-1491911889:359280..359300 | TCONS_00012099-exon-sc0000137-1491911889:359280..359300 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1510915933:359280..359300 | TCONS_00012099-exon-sc0000137-1510915933:359280..359300 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1575043694:359280..359300 | TCONS_00012099-exon-sc0000137-1575043694:359280..359300 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1491911889:360238..360486 | TCONS_00012099-exon-sc0000137-1491911889:360238..360486 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1510915933:360238..360486 | TCONS_00012099-exon-sc0000137-1510915933:360238..360486 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1575043694:360238..360486 | TCONS_00012099-exon-sc0000137-1575043694:360238..360486 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1491911889:360930..362010 | TCONS_00012099-exon-sc0000137-1491911889:360930..362010 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1510915933:360930..362010 | TCONS_00012099-exon-sc0000137-1510915933:360930..362010 | Clytia hemisphaerica | exon |
| TCONS_00012099-exon-sc0000137-1575043694:360930..362010 | TCONS_00012099-exon-sc0000137-1575043694:360930..362010 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:359280..362010 + |
Blast
The following BLAST results are available for this feature:
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