|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012093 ID=TCONS_00012093|Name=TCONS_00012093|organism=Clytia hemisphaerica|type=transcript|length=2619bp
agcttttttcttctttgtagTCAACACTAAATACTGAAGAGATTATTATC
TAAAACCTCTAAGTACTCAAAATGAAGATCGTTGTCTCAGGCTGTCAGTA
ATTCGTGCTTGTCTTGGAATTTGGGGATAAGAATCTGTCTCTATTTTGAA
AAGAATCTGTCTGTCGTGATATTCTCATTAATAAACAcactcctgtgtca
cagacccgctggaaccacagcccaactggaaaattttgtcccagtgggaa
aataccctggaatttcagcccttctgggaatttgattttgatttcatccc
cattcgagatccaatgtttaaaaattacactccaagccattcccactgga
ttttttaacttggaacaatagaatttctatccccattgggatttcgatag
gaattttttatccccactgaaaaaaaggttccaccggggacgtgacacag
gggtgtataaacTAGTTATTAAGGAATATTAAAGGCTGCCCTACCTGCCT
GGTTTAAGAATTACTTTCCTCGTAATAGCACAGAGAATTTGCCATAACAG
ATCTACAAATCGACAATTGTCATAGACTTATAACATAAAACCAATCAATT
CTTTATTGAAGctgtgaaaataaagaaataaaattaaaaatggctGAATG
TCAATCTTTCGGTGACGTTAAAGGACGTTATTTATCCGTCGCAGAAGGTG
ACGAAAAACAACCACGTGTCGATAGTGACGGAGAAGAAGAAATCCAACTT
GTCGATAAAAACGGCGATGTCATTCAAAAGTCCGGACAAAAAGAACGAGT
TGTCAGTAGCTCTGACGGCGTCAAAAACATTAAAGCACGATTCGGTGGCC
AATCAACGTGGCAGAAAAGTAACAATGCTGCCTCCGATACTCCGGCTGTT
GACTCAAATGCTGTCAATTCTGCTCGAAACATGTTTAAGAACTTTGATCA
ACAGAAAGATGACCAGAAATCCTTTAATAGACCAACGTCGAGAAAAGTTC
GCGATCCTAAAGAGTTAATGGAAATGCGTAAAAAAGCGACATACGGTGAT
GACGATGATATTCAGGACGGCGTCGTTAAAAAATCCGTCGTTATTGATCA
AGAAGAGTTAGCGTCAGTCGATCGTAAAGGTGCTTTAAACAAATACAAAG
AATTAGAAAGCTCAAACTCAAATTCCGATAACCAACCCAAAAACCGTCCA
AAAAACCGATTGTTATCCGATAATGACGCACAAGCTCAACTGGGGAAACG
ATCAGATTCGCTCTCCAGTAGTGTTGCGAGCTCAGAGCAAGGAGATATAA
CAGTGGATGTGGGATACGAAGGAAGTGTCTCTCCGTGCAGTCCGACAAGT
GAAATGAGCGATGATTACATCTCGGACACTCCTAAAGAAGAAAAAGTGAT
CAATGACAGTGCCTTCGAAGAAGCTGCAGATCAAATCGAATAAAAAATGC
TGGAAAACAAAGGGGAAAATGAGTGTTTGTATTTTCATCAAGAATAACAC
TATAGCTTGTGAGCCTACTCACCAAAAAGATTAATGTGAAGATGACACGA
CAATTAATGGTGCCGCACGACCGAACAAGTCCACCTGCCACTAATCAATA
ATTTATTGAACTGGAAATCATAAACTCAGTGAGTAACGGAGGAAAAATCC
AAGGAAACTAAACATggaaaatgaagtttttccGCTATTTGTAACATAAA
ATAGAGAGAGAAAACCTAACAGTAATATAATTTAGAGGAGATCTTTATGa
gtaaaaacttaattttattCTTCGTTAAAGACTTGTTATGTCTCCCTTTG
GAGCCTTTATGATagagaaaacataaaaaaacccCTGCGAAACGTATCTT
TGAAAAAGACCTCTCGTAATATGTGTTTTTTCATCGTGAAAATTGAGGAA
GATTTGTTGCTTTTTTTTAGCTAACTTAATAATAGCTCCACCCCTTTTTT
CAAGCCTCGACAAGAAGGCCTCGTACAGCTTTACGAATATCTTGTGTTCA
gaacataaaatgaaaaataagccCCAATGTTTTTCCTCTTTGAATCTTCA
CCCTTTTCTATCTTTCTAtctgttttttttcataatatttcgctttatta
taaagtttttaatttttaattacttCTTTTTTATTAATAGACATACGGCC
CTGCACTAGGTACGGAACACAACCTAACATTAAGCTTAATAAAGCGGCTG
CATTCGATTTTACGGGGGTAGAAAATGGCGTAAAATTTATGACTCTCTTC
CCCGTCCTTCTTGGGTTATAAGAACTTCACaataaaagtaatttttatat
TTCTCTCTCAAGCACTGTTCTCAAAAAAGCAAACACCAAATTTAGCAAAA
ACCTTAGAAAATAATCAACCTGCCAAATTacaacttaaaataaaaaagtt
tgaatgTTGTGCcctgaatgaaaatttattgtAGAGAgtttgtaaagttt
ataagaattttttttggaacatctccttttattagattttattcctttta
tttgcttttatataatttttgttttcgtGTAAATAGAATATAATTATAGC
TCATTGTCTACCTTTCTTTAATATCTATTTGAtgaaagaataattttttt
tgttttaaaagatGTTGCA Run BLAST on NCBI transcript from alignment at sc0000137:230676..234654+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012093 ID=TCONS_00012093|Name=TCONS_00012093|organism=Clytia hemisphaerica|type=transcript|length=3979bp|location=Sequence derived from alignment at sc0000137:230676..234654+ (Clytia hemisphaerica)
agcttttttcttctttgtagTCAACACTAAATACTGAAGAGATTATTATC
TAAAACCTCTAAGTACTCAAAATGAAGATCGTTGTCTCAGGCTGTCAGTA
ATTCGTGCTTGTCTTGGAATTTGGGGATAAGAATCTGTCTCTATTTTGAA
AAGAATCTGTCTGTCGTGATATTCTCATTAATAAACAcactcctgtgtca
cagacccgctggaaccacagcccaactggaaaattttgtcccagtgggaa
aataccctggaatttcagcccttctgggaatttgattttgatttcatccc
cattcgagatccaatgtttaaaaattacactccaagccattcccactgga
ttttttaacttggaacaatagaatttctatccccattgggatttcgatag
gaattttttatccccactgaaaaaaaggttccaccggggacgtgacacag
gggtgtataaacTAGTTATTAAGGAATATTAAAGGCTGCCCTACCTGCCT
GGTTTAAGAATTACTTTCCTCGTAATAGCACAGAGAATTTGCCATAACAG
ATCTACAAATCGACAATTGTCATAGACTTATAACATAAAACCAATCAATT
CTTTATTGAAGctgtgaaaataaagaaataaaattaaaaatggctGAATG
TCAATCTTTCGGTAAGAATGTTTTCTGTGGCCCTGGATTTGCCAAAAATC
ATGTTCTATTTGGAATTATAAGAAAAATCATTTGGCAAAAAAAGTCTTTT
CATGACTGATGATTTCATGTCTATTGTTTTTGACAGAGGATATCAAGCGA
AAAATCTTATTTCACTataattttcatgaattttctttgtgagttttttg
tccgttttggtTGTAAACCTTTGGGAATCTGGTTGAGTTTAGGTTCTTTA
Atgaacccagctggcacacaacgttgttttaacgttaatctaacgttaaa
tggacgttgtgaacgttagaataacgttgaaacaacgttgtgtgccagct
gggaacagaTTTGGTTAGAGTTGGTTAAAATTaaggacttttttcttttc
catcAACAGGTGACGTTAAAGGACGTTATTTATCCGTCGCAGAAGGTGAC
GAAAAACAACCACGTGTCGATAGTGACGGAGAAGAAGAAATCCAACTTGT
CGATAAAAACGGCGATGTCATTCAAAAGTCCGGACAAAAAGAACGAGTTG
TCAGTAGCTCTGACGGCGTCAAAAACATTAAAGCACGATTCGGTGGCCAA
TCAACGTGGCAGAAAAGTAACAATGCTGCCTCCGATACTCCGGCTGTTGA
CTCAAATGCTGTCAATTCTGCTCGAAACATGTTTAAGAACTTTGATCAAC
AGAAAGATGACCAGAAATCCTTTAATAGACCAACGTCGAGAAAAGTTCGC
GATCCTAAAGAGTTAATGGAAATGCGTAAAAAAGCGACATACGGTGATGA
CGATGATATTCAGGACGGCGTCGTTAAAAAATCCGTCGTTATTGATCAAG
AAGAGTTAGCGTCAGTCGATCGTAAAGGTGCTTTAAACAAATACAAAGAA
TTAGAAAGCTCAAACTCAAATTCCGATAACCAACCCAAAAACCGTCCAAA
AAACCGATTGTTATCCGATAATGACGCACAAGCTCAACTGGGGAAACGAT
CAGATTCGCTCTCCAGTAGTGTTGCGAGCTCAGAGCAAGGAGATATAACA
GTGGATGTGGGATACGAAGGAAGTGTCTCTCCGTGCAGTCCGACAAGTGA
AATGAGCGATGATTACATCTCGGACACTCCTAAAGAAGAAAAAGGTGAGA
GCAAGAATATAACTTAATTGTAAACGTTTTTAAGCCTGcttttcttagct
ttttgagttgtaagcctaaaaatgttcttattttcaccatttttgggTAT
ATTTCACTTAGGTGTGAAAGTGGATTTCACACCTTGGAACATACAAGAAG
TTCACCCTGGTGGAAAAATCATTCACTTTCCAAGGTGTAAAATGGACTCC
GACCGTATAACTTTTCNCATTGCACGGATTTTTAAGCCTgcttgagtttt
aagcctaaaaatgttcttattttcaccatttttgggTATATTTGTCTCAG
GAAAATTGATCAGATCACTTAGGTGTGAAAGTGGATTTCACACCTTGGAA
CATACAAGAAGTTCACCATGGTAGAAAAATCATTCACTTTCCAAGGTGTA
AAATGGACTCCGACCGTATATAACTTTTCCTGTGTGCGATTTCCTAAGGA
GTTTGGTGCTTTAGAGTCCTTTAAATGCCTTTCGATTCTCACCGTAAATT
TCATGGTGAATTTTGGTTGATCATTCCTATTGAAAGTGCCCTATCtgcaa
tcaaagtcataatatttgagaaaaaagggaaattcaccggaaagttttga
aaccacagtCGATTTGGAAGCGCGCTGACTTAGGTTGGAAGGAGAGAgtt
ttatttctgatttttaagGCTTAGNACTGACTAGGGTTGGAAGGGGAGAG
TTTTATTTCTGAGTTTTAAGGCTTAGGCtctgaggattcaaaagttaaaa
aatggtccaataaggctcaaaataaagcctggaagtctataaacccctca
caaattgaaatattcgattaaattaaaaagatagcccaaaatcgactttc
tcgccggaactttaaacgttaaaataataaccggaattctcaatatattt
tagTTGAATGAATTTCTGGATATTAAACATGCTTCTTATTTTCTATTTCC
TTTTAGTGATCAATGACAGTGCCTTCGAAGAAGCTGCAGATCAAATCGAA
TAAAAAATGCTGGAAAACAAAGGGGAAAATGAGTGTTTGTATTTTCATCA
AGAATAACACTATAGCTTGTGAGCCTACTCACCAAAAAGATTAATGTGAA
GATGACACGACAATTAATGGTGCCGCACGACCGAACAAGTCCACCTGCCA
CTAATCAATAATTTATTGAACTGGAAATCATAAACTCAGTGAGTAACGGA
GGAAAAATCCAAGGAAACTAAACATggaaaatgaagtttttccGCTATTT
GTAACATAAAATAGAGAGAGAAAACCTAACAGTAATATAATTTAGAGGAG
ATCTTTATGagtaaaaacttaattttattCTTCGTTAAAGACTTGTTATG
TCTCCCTTTGGAGCCTTTATGATagagaaaacataaaaaaacccCTGCGA
AACGTATCTTTGAAAAAGACCTCTCGTAATATGTGTTTTTTCATCGTGAA
AATTGAGGAAGATTTGTTGCTTTTTTTTAGCTAACTTAATAATAGCTCCA
CCCCTTTTTTCAAGCCTCGACAAGAAGGCCTCGTACAGCTTTACGAATAT
CTTGTGTTCAgaacataaaatgaaaaataagccCCAATGTTTTTCCTCTT
TGAATCTTCACCCTTTTCTATCTTTCTAtctgttttttttcataatattt
cgctttattataaagtttttaatttttaattacttCTTTTTTATTAATAG
ACATACGGCCCTGCACTAGGTACGGAACACAACCTAACATTAAGCTTAAT
AAAGCGGCTGCATTCGATTTTACGGGGGTAGAAAATGGCGTAAAATTTAT
GACTCTCTTCCCCGTCCTTCTTGGGTTATAAGAACTTCACaataaaagta
atttttatatTTCTCTCTCAAGCACTGTTCTCAAAAAAGCAAACACCAAA
TTTAGCAAAAACCTTAGAAAATAATCAACCTGCCAAATTacaacttaaaa
taaaaaagtttgaatgTTGTGCcctgaatgaaaatttattgtAGAGAgtt
tgtaaagtttataagaattttttttggaacatctccttttattagatttt
attccttttatttgcttttatataatttttgttttcgtGTAAATAGAATA
TAATTATAGCTCATTGTCTACCTTTCTTTAATATCTATTTGAtgaaagaa
taattttttttgttttaaaagatGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012093-exon-sc0000137-1491911889:230676..231336 | TCONS_00012093-exon-sc0000137-1491911889:230676..231336 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1510915933:230676..231336 | TCONS_00012093-exon-sc0000137-1510915933:230676..231336 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1575043694:230676..231336 | TCONS_00012093-exon-sc0000137-1575043694:230676..231336 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1491911889:231735..232469 | TCONS_00012093-exon-sc0000137-1491911889:231735..232469 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1510915933:231735..232469 | TCONS_00012093-exon-sc0000137-1510915933:231735..232469 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1575043694:231735..232469 | TCONS_00012093-exon-sc0000137-1575043694:231735..232469 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1491911889:233432..234654 | TCONS_00012093-exon-sc0000137-1491911889:233432..234654 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1510915933:233432..234654 | TCONS_00012093-exon-sc0000137-1510915933:233432..234654 | Clytia hemisphaerica | exon |
| TCONS_00012093-exon-sc0000137-1575043694:233432..234654 | TCONS_00012093-exon-sc0000137-1575043694:233432..234654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:230676..234654 + |
Blast
The following BLAST results are available for this feature:
|
