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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012092 ID=TCONS_00012092|Name=TCONS_00012092|organism=Clytia hemisphaerica|type=transcript|length=1056bp
cttagaacaagaaataaacaaactaaaaacatttactacgaaaaaaaaaa
tatatgtacAAAATGTCGCCAGAATCAGAGTCTCTCCTAAAAGTTGCCGA
CACTTCAATTACGGCATCTCCGACACAAGAAGATACAACGACGTACGTCA
AGCTCAAAGATGATGATTTTATAGAAGCTGCTGGCTTGCAACGAAGTGGT
AAAAGCGGCAAAAAATCAAGCGTCGAAAAATTGTTAGAAGAATCATTAAA
CACAAGCGAATCAAACGAAAACACAGTAGAGGAACCCAGTCCACCATCTC
CCAAACACATAAATGGTAACCATAGCAATGGGGCCGTTGACGAGGACCAT
GTTATCGGCGTTAAAACGACGCCAGAGCGCCCACAGAACTTGAAAAGTGA
TGAATTTATACAAGATGCAGGTCTATCCAGGACGGGAAATGTGCCAAGGA
AATCGTCAATGGAACGCCTTTTAGaggACCAATTACAAACAGGAGAAACA
TCGCCTACAACACCGACAACACCCCGATCACCACACCGTTATCCGATGCA
ACGTGCACAAACAATCGCCGTCACATCACCGACAGAAGAAGAAAAACGAC
GACGACTTTCGTCAACATCTTCGACATCCTCCACCGACGATTTAGGAAAA
CCACGATCACGAAGCACTCGTAAATCATCAATCTACGAACTCAAACAAAT
CGAAGCGCCGACTGCGATCGTCGGTAATCGTATTGCATCCCGAACGCAAC
ACTTGTTTCAACAATACGAAAAAGACATGTCGTCACACGAAGCTAAACCA
CTACCCGACATCAACAGTAACGAAGAAACTCGCACCCGACGACGCAGTTA
CGAACGTACAGTTTCAACCGACGATAAAACGAAAGTTGAACTCGCCCGCG
AGGCTAAAGCGCGCGAACTAGAAGAGATCAGACGGGCGTACCAGGAGCGT
TTGATTCTTGAAGAACAAGAACAGGAGAAAGAACGAATGGAAAGAagaca
aaatcaagaattgaaatGCAGTCGCGAACTTGATTCATAATATTTTGTAC
GACACG Run BLAST on NCBI transcript from alignment at sc0000137:221075..228843+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012092 ID=TCONS_00012092|Name=TCONS_00012092|organism=Clytia hemisphaerica|type=transcript|length=7769bp|location=Sequence derived from alignment at sc0000137:221075..228843+ (Clytia hemisphaerica)
cttagaacaagaaataaacaaactaaaaacatttactacgaaaaaaaaaa
tatatgtacAAAATGTCGCCAGAATCAGAGTCTCTCCTAAAAGTTGCCGA
CACTTCAATTACGGCATCTCCGACACAAGAAGATACAACGACGTACGTCA
AGCTCAAAGATGATGATTTTATAGAAGCTGCTGGCTTGCAACGAAGTGGT
AAAAGCGGCAAAAAATCAAGCGTCGAAAAATTGTTAGGTAAGTGGAGACT
TTAAAATATACGGCGAACCAACCGTATCCTGGCGAACCATCCGCAAATCC
AAAGCATTTACTCCAGATACCAAACGATGCAATTTGTGTCTTGCCGAGAA
ATTCGAGATCGCGAACTATCCTGGCAAGAACTTACTGAATAAGAGATCAG
AAATTATTGCCAAATGTAGACACAGacgaaaatttcagcttgataTCTTT
GAACCACCTGATGACGTtcaaatgtgacgtcataaatattttttgaagac
AACATATTGTATTTTATTTTCTAACGTTATCTCATTTCAtttcactgaag
attggtgcctgtgcaccatgaaactctgagtttgaaacaaagatattttg
tcaactctttattatagaGACTTTAAAATATACGGTAAAATAAGCAAGCT
TGATATAGACTTAACTTAGCCTTGTGCTTTATTAAATTAACAATAAGTCA
ATGCTATAGGTTATTATTCTACAGTTAAGTGTTTTGCTCTGCTTTACCTC
CTCGCACCAGATCGATACACATACCTCACGTAAGTGTgagaaatacaatg
aaaaagtggCCAAAAACATACAACTATTTTGACAACAATATAAAACGTTA
TAAAAcgttttaaacgttttaaaagtacagtaaaattcaaatatttatGA
TTCATTTTTAGAAGAATCATTAAACACAAGCGAATCAAACGAAAACACAG
TAGAGGAACCCAGTCCACCATCTCCCAAACACATAAATGGTAACCATAGC
AATGGGGCCGTTGACGAGGACCATGTTATCGGCGTTAAAACGACGCCAGA
GCGCCCACAGAACTTGAAAAGTGATGAATTTATACAAGATGCAGGTCTAT
CCAGGACGGGAAATGTGCCAAGGAAATCGTCAATGGAACGCCTTTTAGGT
AGGGAAATCGAGAATTaatgcacgcttttttttataaagttggTGTTTTT
CAATTCGTTAGGAATATTCGTAACTTTTTGGGggaaatcatcctgaaata
ttcttacggtattcttaagttaggatccaatcccagccaaaatctaacat
gtactcttaggttccagataaacgggggggggggggggggaaaATTTTTT
AGATTTTAATAAACGGGGGGGACCTAATTGCCGGGGGGGGGGAAATTGTA
CTTCTGAAACCCAAAAATAAGGTAAAAATAggctaaaatcaggctattta
gagcaaaataaggggccttcactttgacagctgaaaatattctcagagat
taataaacggggggggtcctaataaggttcgggggggttggaaaattttc
gaaaaattaacaagcgggggggcccgtttatttggaacctaagagtacca
tGCTCCCGTTGGCACAAACCATTGTTGCCCCTCCTCAGTCACTAAACTTC
ACCTCCTCTATGTTAATTGCACATCGAANCACTTTtagccctgcctattc
taattgctaGAGTTGGCATAAAGTGGATCGAAAGTGGGCTGTCTTTGTTT
tagcaattagaataggcagggctaAAAGTGGGCCGACTAAACCAGAGCTT
AGCATTGTTGGCATTTGTaagttcagttgccaaatttcatgatgatggta
ttcttaccatattcttcattttttgaccaatttcatcataaatattctca
taaagtatatccttataaaaaaacgtgtatctcatTTACAATTTTGATAG
ACATATTATGATGAAAACGGGTATAATTAAGTTTTGCTAAAGACCTTATC
ATCAAAACTTTTAAGATTGATTCTGCAAGAATTTGCATTGagaattgaag
atttttcaaacatgAAATTGGatggtttttctttttcattttgagacttt
aagatcaaaataaaatttaaaatcttaataaccaaaatatttcttttttg
ttttaaacaaaaaaaatatgggTAATAAAATATCAGCTACTGCATTTGAG
atttaaaatttcgaaatagaaaaaaaaaccattgttatgactttttaaaa
atataattttcagtttgaTTGTTATCTTGTGGAAacagtttaaaaaaaac
tgatacAGACCTTTCCGGTAATAAAAGTAATAGATactgatttcaaaaat
aaagaatttttaaagaagtcATTTAAGCAACTTGCACGCGAAGTTTTTTC
GGTTTTTCTTCTCTGGATATTCAAATTCTTTCTTCAAATTGTTTGAGGTA
TCAGGGACCAGGTAATCTTTGAATTTGAGCTGAATTGACTTGATGGAATG
CCattaatttggaaaaatttgctCTGGAATTGTATAAAACACGCAAAATA
CATaaaattaaaactatttttcattgttttttttctttcagaggACCAAT
TACAAACAGGAGAAACATCGCCTACAACACCGACAACACCCCGATCACCA
CACCGTTATCCGATGCAACGTGCACAAACAATCGCCGTCACATCACCGAC
AGAAGAAGAAAAACGACGACGACTTTCGTCAACATCTTCGACATCCTCCA
CCGACGATTTAGGAAAACCACGATCACGAAGCACTCGTAAATCATCAATC
TACGAACTCAAACAAATCGAAGCGCCGACTGCGATCGTCGGTAATCGTAT
TGCATCCCGAACGCAACACTTGTTTCAACAATACGAAAAAGACATGTCGT
CACACGAAGCTAAACCACTACCCGACATCAACAGTAACGAAGAAACTCGC
ACCCGACGACGCAGTTACGAACGTACAGTTTCAACCGACGATAAAACGAA
AGTTGAACTCGCCCGCGAGGCTAAAGCGCGCGAACTAGAAGAGATCAGAC
GGGCGTACCAGGAGCGTTTGATTCTTGAAGAACAAGAACAGGAGAAAGAA
CGAATGGAAAGAagacaaaatcaagaattgaaatGCAGTCGCGAACTTGG
TAAGATTCTATCTCCTTTTCATTCACTTTCCTGAGAAATACAAACACCCC
TGTGTTACAGACCTGCTGGGATCCTAGACCCACTggtaaatttggcaaaa
aaattcgtgcccggtaggaaaatacccgggaatttcagccccactgaaaa
attgatttttgtttcatctcaatctaaaaatcaatatttgaaaaCTGCAA
TCCAAAACCATcgccactggattttttaaccttggaacaatagattTTAT
ATCCCCATTTGAATttcgataggaatttttatccccaataaggaaaaaag
ttccaccggggttgtgagacaggggtgtatatgtACTTGGAACAAATATT
AACATAAAAATAACACCAGAGCTGAGAATCTTCCACGGATTCAAATACTG
TTACTAGGCTCTTAATCGATATACGCCTTTCCAAAATTTAACCAAAGGAT
CAAAAAGCAAACCAGAAAAAGTTGCGCTGGTAAGATAAacattcagaaaa
ttttttaagatAATCGGAAAACAAAATAAACTGTCCAATACTGTTAATCA
CTTGAGTGTTTGATCAAAGATTTCTTGACTTAAGCCAAAACACAAACATT
TGGAGCTTCTGCAATGTAAACAAGTAGCTTCTGAACAGTGACGTCTAAAC
CGAGGCTTAACATATCAGCTACgaagaaaaatatgatttcTTATGTCTCT
TCAGTTTGattaagacacccctgtctcacaaccccggtagaacttttttc
cacagtggggatagaaattccaattttaatcccaatggggatagaaattc
tattgttccaaggtttaaAAGTCCCGGATGCATTTGGATTTCAATATGTA
AATATTGAACCTcgagtggggataaaatcaaagtcaatttcccagcgggg
ctaaaattccagggtattttctgtgacacgggggtgtCTTAAGAATGCTC
AACGAGCTGATAGATGGTTATAAGTGGAATATATTAAGCTTTTATAACCA
TTCCGACTCCCTGGTTACGACTAATTCAAGCGCTCGTAAAAACTGTATCT
ATCTTTACATTAAACTCTATATAAGGAATGTTTTAGAATTGCAAGGGTTT
TATTGACAAGAGGATTTTCGTAACTTCCTTGCACCTCCGGGTTGAGTAGT
TTTTCGCAAGTTTACAAAAAGTATCGCGTTCATAAAATTACTCACCGACT
GTTGTAATAAATGGCGAGTTTTATTCATATTTGTATATTAATGGGAGTTT
TTTTCCCTCTTCATAAAAAGGGgccattttttgtctttttaataAATTCG
GAAATTTCATTCATGAAATTATGTGAATCTGTGGAAATCTGGAAAAGCGT
AAAATAAGTGATTCATTGATTATCGAGTTATTAAAAGAGTATCAATCTCA
GAATTtactgaaaaatatataaaagagGATAAATTATTAGGAAGGCCTTA
TGGATTGGACATGGGGAGCGATctgtgttttttgtttattttgacaatca
tagattgaaaataaaaaaaggaaaatttggacaaaaaatgatgatttaaT
AGTTGGTGATAATCCAAATTTCTTTTCACTCATTTTTTTCgctttgaaaa
aataagatgttatcattgaaaataaaagaaaatatcgaaatgttttcttt
gttttgtaaaCAAAAGATTTGAATTGGTTCTATTGTCTTTACAACAATTG
AGAAGGGGGTAGTGTCATTTTTTTAAGGCCTTGATGAGAGTGAGTAGAAT
GTTTCGCAAAATAACTTatataattataataatttGATGAACAATTTTGT
TGAAACAGGTCAAAGATGGGTAGTGTCATTTTAATGAAATCATAAACTCT
TTTGGTATCTTTTTTGTGTGGaattaagattttcaaaataaaaaaagatc
aaTTCCTTCGGTCAAAGAAGATGATTCTAAAGGATTTAAAAGTTTTGGTG
TTAGTTTGAATAATTTTTATGGTgttgagaaaattttaaaagaagaactt
ggattttatttaatttaatGGCCTTTTTACGATACGGTCATTTTGAATTG
TTTGACAAAAGGGTAATGGATAACTAACAGGGGAAGATTCATAAATAGAA
CACAAGTTTATTTAAGAACAACTCTAtaaaaaacataaggcttcgatgcc
caaaatgttaagaacaagttaagaactttttaaggctttgtggactcgaa
aacacccaatttcttaggaaaatgaacaaaaatgctcaaaaaatggtgaa
aataagaacatgttaaaaatatttttaggcttaaaagtcaaaaagttaag
aacaggGGAAGATTTCTTAAATAGGATATATAACTGACTGAGCAGAAAAA
GTACAATTTTTATNAAAGATTTCATAAATAGGATATATAACTGACTGAGC
AGAAAAAGTACAATTTTTATCAatctttcttgtttttgttATATGAATTT
TACGGAGCTCAAAGAGAGGATAATTAAAAACGGTTTGTCCTAAGAGTTGA
AAGATTATATAGTACaggatttgtttttctttctctcgCGTAACCGATAA
AGGCGTTAAAAACCCAAGATAAGACCTATTTCGACAGAGAATATAATAAA
TTATTACATCAATAttggtttgatttggttttcTGTAGTTTAAACGTCTT
TTTCTCGTATGTTATTATTTCTTTCTCTACGTCTTTTTTCCTTGAGATTT
GAACAGGAGATAGGATaaaggggggggcgtacgggtttgtcggtgtgtcg
gtattgacccttttttgcgtcggtgtttcggtgttttaaGGGAAaagtgt
cggtatttcggtgttggaCATGCCTTGCGGTGACggtaaaatgaattttt
tgggtcggtatttcggtaattCGATAAATACTGTCGGTGAATCTGCATAT
TTCAAAGGAtctcaaaaaagtctttgaaTCTTCATTTCTGCATTTCAGCT
ATTGAATATCTTATCTCTACAAGAATTGAAGTATTATAGCTATTTTTAGT
AGCTacctagactatgctatagtctaagacgagtttcatctaagaggaac
aaacgtgaagacgggaattttttacgTGAGTAGCTGTTGtctaaacacag
actctatccgccgcgaaacatattacgttttatagtATACAAACTATGAT
ATCATAATattatattatacggacgatagcatcgtctagtagCTACCCTG
TCTCATcctctttttcttaaaattgtgtGAATAATGGCGTTTCTTAACCT
CTTGTTTACCGGCAATGTgcactttttgaaagaaaaaatatcataatACT
CTACCCAGTGAGTAACAGATAAAGAAAGCATTTGCAGCGTGTGGCAAGCT
TTCTCGTGACCTCAAATGCAGCACTCATCAAAAACCAGCAAtcattaatt
ctttcattttaacgGAATAATCCTTTAACTCATAATTTAGATGCGTTTCT
CAGCATTTTGGGtactttaaatttcaaattttgcctcCTCGGGCCAAACC
TGTTCAACATAAAATACCCCTTGCAGAGCTCCCTTTGCAGACTGTCAATA
CCAATTTAGTTTCAGCCTAAATCAAACGAGCTATTTCTGAATGGCATAAA
ATGACTAGCTTTGACCAATTTGTGAAAAAGAGAACTTTTTAGCCAAATGA
GATTTCCAGAAATGTAGAATTTTTattgtcggcgcaaaccatgcttGTGC
CTTCTTTTACCCGGGTGGTTTTGTTTCAATCGTTTTGCGACCCTTTTCGA
GAATGTTTCAATTTGATTAGGGTTTGTATAATTTAGTTTGGTTAAAGTGT
TTAAAAGACATTTTAATGAGTAATATGCTAATGCTTCAGGGGTTTCGGCC
TGTGAATGATTAGAAAACCTATTGCTTGGGATTGGGAGGGCTTCTCTGCA
ATCTGATCCGTAAGTTATCATGCCATGTCGTGAATAAAACACCTTACAGT
ACTCTTCTGTGGTCAGGTAAGCATGCAAAACTTGCtacacattttcttta
taagcaactccaattttcggctCAGGCCTGGGGCTGCTTAGCATTCTGGC
TCAATTTNcacattttctttataagcaactccaattttcggctCAGGCCT
GGGGCTGCTTAGCATTCTCGCTCAATTTCTGAAAAGTTTGGTTCGACcgc
ccctgatattataccatatttatttATGTTTATTGGATCAAGGGATATTT
TTTGCCATAgctagattatctaaaaagctttcaCTTTGTGAGATAGCGAA
AAAGACCTGCTAATATGAGACCTTGAGATTTGGCATTatgattgcttata
aaaaatgtgtactaaCATGTATTTTACACAGTTTCACGGCCCGTCCTAGT
AGAAAAAATCTCGAGGGCGTCTTTGCCTAATCTGAAAACTGGAGAAAGGG
TTAAAAACGTGTAGTTTCATCTATTCTGAAATCAAGAGTCTTCGTATCCA
AAATTTTCCGAGCATTGTTGTGCCTCTTAGTCACTTATAACTGTAGAATC
TTCcaaattccactgcatttcactTAATAACTCTGCAATCCTGAGTTTGA
AGTTAGAAatccttttaattttttaacgaattttattTACTGTAGATTCA
TAATATTTTGTACGACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012092-exon-sc0000137-1491911889:221075..221311 | TCONS_00012092-exon-sc0000137-1491911889:221075..221311 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1510915933:221075..221311 | TCONS_00012092-exon-sc0000137-1510915933:221075..221311 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1575043694:221075..221311 | TCONS_00012092-exon-sc0000137-1575043694:221075..221311 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1491911889:221986..222222 | TCONS_00012092-exon-sc0000137-1491911889:221986..222222 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1510915933:221986..222222 | TCONS_00012092-exon-sc0000137-1510915933:221986..222222 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1575043694:221986..222222 | TCONS_00012092-exon-sc0000137-1575043694:221986..222222 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1491911889:223666..224223 | TCONS_00012092-exon-sc0000137-1491911889:223666..224223 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1510915933:223666..224223 | TCONS_00012092-exon-sc0000137-1510915933:223666..224223 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1575043694:223666..224223 | TCONS_00012092-exon-sc0000137-1575043694:223666..224223 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1491911889:228820..228843 | TCONS_00012092-exon-sc0000137-1491911889:228820..228843 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1510915933:228820..228843 | TCONS_00012092-exon-sc0000137-1510915933:228820..228843 | Clytia hemisphaerica | exon |
| TCONS_00012092-exon-sc0000137-1575043694:228820..228843 | TCONS_00012092-exon-sc0000137-1575043694:228820..228843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:221075..228843 + |
Blast
The following BLAST results are available for this feature:
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