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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012086 ID=TCONS_00012086|Name=TCONS_00012086|organism=Clytia hemisphaerica|type=transcript|length=1217bp
TCTCACAACTTATCATCAATGAAATTGGTTAAGATCGATGACACCGTTTC
ATCTAAAACACAAGAAGTTCGTAACAAACATGTAAGAGCTCGTAACCGTT
GGCACTTATTCGCAACAATGACCATGAATCCTAGCATCATCAGATATCGA
ACCAGATATTTAGATGTAGATAGCTCTTTACTACCAGATTATACACATGT
GGAcgaaaaactaaacaaaaaagaCAATAATCATCTAAGCCCAATAAATA
ACAATTTTACTCGCGGGAAGAGTAAAGACCCTAGTGCAAATAACGGTAAT
GGCGACCTAGAGCCAGAAAAACTACGACAGAGACAGGCCAAAAGTGTTAT
CGGACAATTAAATCAAGGTTATGATGAGAATATGGTGTTTTTCTAGATGG
ATAAAGCTGATATCACAGTAAtcaattgttttcacggggtccacggttag
tctagcaagctagacgactaattcaaacatagtagaaataaagcaaaaag
taatggagggaacaatataagtttatacaaactaaatcccgtaacaataa
tcgtattatcatataacgcctatataCTACTGTaatacacgcattataaa
cgactctagTCTAGTCCACGGCAGGCTAACTTGGCTATCGAAGAGCTGCA
CGAAACATTGGAAGGACTGGGTTCGAGCCAAGGAACCCTGGCGATCAAGG
CTGGGTGAACAAAGGCGAGTGTTGCATTGATAAAGATGTTTCACGGTGGA
CTGCGATTTTTGTGTAACTGCTtatgtaagaaatattttactgaACACGA
TAAACTGCTAATTGAtgtaatttttatgaaattttattttatatcattGT
TGAACCTCAATTGACACGTTGTAAGTCCCGCTGGGGCTTCAGCTCCACTT
GAAAAATTGCGTGtgaaaaaataccctagaattttcagtcccactaaatt
gattttgatttcttcccccatttgaaattcagtGTTTAAAAAATGCACTC
CAAATCCATCCCTCTGGGtgttttaaccttggaacaatagaaatttttat
ccttcttgttggaaaaagtttcaccggtgGTGGATTGCAACCATAAAACT
ATGATTAAAATACGTAatcacccacaaccagccacaaccagccggAAAAA
AGGTACAgtcacccagaaaaaggtacaaccagccagaaaaaaaaggtaca
atcacccactaccaccc Run BLAST on NCBI protein sequence of TCONS_00012086-protein >TCONS_00012086-protein ID=TCONS_00012086-protein|Name=TCONS_00012086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
SHNLSSMKLVKIDDTVSSKTQEVRNKHVRARNRWHLFATMTMNPSIIRYR
TRYLDVDSSLLPDYTHVDEKLNKKDNNHLSPINNNFTRGKSKDPSANNGN
GDLEPEKLRQRQAKSVIGQLNQGYDENMVFF Run BLAST on NCBI transcript from alignment at sc0000136:553565..554781 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012086 ID=TCONS_00012086|Name=TCONS_00012086|organism=Clytia hemisphaerica|type=transcript|length=1217bp|location=Sequence derived from alignment at sc0000136:553565..554781 (Clytia hemisphaerica)
gggtggtagtgggtgattgtaccttttttttctggctggttgtacctttt
tctgggtgacTGTACCTTTTTTccggctggttgtggctggttgtgggtga
tTACGTATTTTAATCATAGTTTTATGGTTGCAATCCACcaccggtgaaac
tttttccaacaagaaggataaaaatttctattgttccaaggttaaaacaC
CCAGAGGGATGGATTTGGAGTGCATTTTTTAAACactgaatttcaaatgg
gggaagaaatcaaaatcaatttagtgggactgaaaattctagggtatttt
ttcaCACGCAATTTTTCAAGTGGAGCTGAAGCCCCAGCGGGACTTACAAC
GTGTCAATTGAGGTTCAACaatgatataaaataaaatttcataaaaatta
caTCAATTAGCAGTTTATCGTGTtcagtaaaatatttcttacataAGCAG
TTACACAAAAATCGCAGTCCACCGTGAAACATCTTTATCAATGCAACACT
CGCCTTTGTTCACCCAGCCTTGATCGCCAGGGTTCCTTGGCTCGAACCCA
GTCCTTCCAATGTTTCGTGCAGCTCTTCGATAGCCAAGTTAGCCTGCCGT
GGACTAGActagagtcgtttataatgcgtgtattACAGTAGtatataggc
gttatatgataatacgattattgttacgggatttagtttgtataaactta
tattgttccctccattactttttgctttatttctactatgtttgaattag
tcgtctagcttgctagactaaccgtggaccccgtgaaaacaattgaTTAC
TGTGATATCAGCTTTATCCATCTAGAAAAACACCATATTCTCATCATAAC
CTTGATTTAATTGTCCGATAACACTTTTGGCCTGTCTCTGTCGTAGTTTT
TCTGGCTCTAGGTCGCCATTACCGTTATTTGCACTAGGGTCTTTACTCTT
CCCGCGAGTAAAATTGTTATTTATTGGGCTTAGATGATTATTGtcttttt
tgtttagtttttcgTCCACATGTGTATAATCTGGTAGTAAAGAGCTATCT
ACATCTAAATATCTGGTTCGATATCTGATGATGCTAGGATTCATGGTCAT
TGTTGCGAATAAGTGCCAACGGTTACGAGCTCTTACATGTTTGTTACGAA
CTTCTTGTGTTTTAGATGAAACGGTGTCATCGATCTTAACCAATTTCATT
GATGATAAGTTGTGAGA Coding sequence (CDS) from alignment at sc0000136:553565..554781 >TCONS_00012086 ID=TCONS_00012086|Name=TCONS_00012086|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000136:553565..554781 (Clytia hemisphaerica)
CTAGAAAAACACCATATTCTCATCATAACCTTGATTTAATTGTCCGATAA
CACTTTTGGCCTGTCTCTGTCGTAGTTTTTCTGGCTCTAGGTCGCCATTA
CCGTTATTTGCACTAGGGTCTTTACTCTTCCCGCGAGTAAAATTGTTATT
TATTGGGCTTAGATGATTATTGtcttttttgtttagtttttcgTCCACAT
GTGTATAATCTGGTAGTAAAGAGCTATCTACATCTAAATATCTGGTTCGA
TATCTGATGATGCTAGGATTCATGGTCATTGTTGCGAATAAGTGCCAACG
GTTACGAGCTCTTACATGTTTGTTACGAACTTCTTGTGTTTTAGATGAAA
CGGTGTCATCGATCTTAACCAATTTCATTGATGATAAGTTGTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012086-exon-sc0000136-1491911889:553565..554781 | TCONS_00012086-exon-sc0000136-1491911889:553565..554781 | Clytia hemisphaerica | exon |
| TCONS_00012086-exon-sc0000136-1510915933:553565..554781 | TCONS_00012086-exon-sc0000136-1510915933:553565..554781 | Clytia hemisphaerica | exon |
| TCONS_00012086-exon-sc0000136-1575043694:553565..554781 | TCONS_00012086-exon-sc0000136-1575043694:553565..554781 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:553565..554781 . |
Blast
The following BLAST results are available for this feature:
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