|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012074 ID=TCONS_00012074|Name=TCONS_00012074|organism=Clytia hemisphaerica|type=transcript|length=955bp
GGATGACACAAATATAAATAGCAGAAACCGTGAAATAGAGTTCTGTATAT
ACGATCTGAATACGAAACCTATCTACAGGGTTACACCATACacataaaaa
ttacaaaatatgaaaaatcggAATAAAAATATGGATACGGATGAAAATCA
AACGAATATACGAGAAGGATATATGTTTGTGCAAAGTTCATCGGTATGGA
AGCCGTGGGCGATGAAAGCTAAGTATTTTATACTCACCAATGAACATTTG
TATTGCTACAAAAGGCGCGGTGACCTAGATTCGATACCAAATGACGTTAT
CCCGTTAAGCGGGCTTGCCGTAACAATAGACGAGGAAAAACGTGGATTAC
GTAAACGATTTTATTTACGTATGACGTCGACTGAATTACGGCGTTCCTTG
AACCTGTTTTGTTTCATGGCTGACGAACGTAACGAATGGTTGACGGCAAT
TTTGACGGCGTTAGCTGGAAAATACACCGACAAAGGACTCCGACATAATT
TACGACGCAAATCGGGTAAAACGCATTCGTTAGGAGAAGTTGAGTTTAAT
CGAAGAAATCAAATCGATTCGCTTGAGCAGTTACGACCTTTTTCGATCAG
TTGTTTAGAACTAACGAACTTATCGGTCATGACAGACCCGTTAAACCCGA
CTCGGAGTGTTGTTCCTATTCGAAAAACATTCGCCGAATTACACGCATCC
AaaaagatgtcttccagttcaCTGGATGTAAATATCAGGACTGACCTTTC
AGTGGATTCAAATTTAGGAAGTAATAGCGCACCATTAAAACGAAATCACA
NTGCGATCGAaacgcgcgcaagtggagaccggcctttagccCCTTCTTTA
AATTATAGGTCATTTATTTGTGTTttgtataaaatatttttttgctgtca
aaaagtcaaaataatgttcaaaagaaattataaagcaatttaaagtaaaa
aagga Run BLAST on NCBI protein sequence of TCONS_00012074-protein >TCONS_00012074-protein ID=TCONS_00012074-protein|Name=TCONS_00012074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MKNRNKNMDTDENQTNIREGYMFVQSSSVWKPWAMKAKYFILTNEHLYCY
KRRGDLDSIPNDVIPLSGLAVTIDEEKRGLRKRFYLRMTSTELRRSLNLF
CFMADERNEWLTAILTALAGKYTDKGLRHNLRRKSGKTHSLGEVEFNRRN
QIDSLEQLRPFSISCLELTNLSVMTDPLNPTRSVVPIRKTFAELHASKKM
SSSSLDVNIRTDLSVDSNLGSNSAPLKRNHXAIETRASGDRPLAPSLNYR
SFICVLYKIFFCCQKVKIMFKRNYKAI Run BLAST on NCBI transcript from alignment at sc0000136:105599..106553 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012074 ID=TCONS_00012074|Name=TCONS_00012074|organism=Clytia hemisphaerica|type=transcript|length=955bp|location=Sequence derived from alignment at sc0000136:105599..106553 (Clytia hemisphaerica)
tccttttttactttaaattgctttataatttcttttgaacattattttga
ctttttgacagcaaaaaaatattttatacaaAACACAAATAAATGACCTA
TAATTTAAAGAAGGggctaaaggccggtctccacttgcgcgcgttTCGAT
CGCANTGTGATTTCGTTTTAATGGTGCGCTATTACTTCCTAAATTTGAAT
CCACTGAAAGGTCAGTCCTGATATTTACATCCAGtgaactggaagacatc
ttttTGGATGCGTGTAATTCGGCGAATGTTTTTCGAATAGGAACAACACT
CCGAGTCGGGTTTAACGGGTCTGTCATGACCGATAAGTTCGTTAGTTCTA
AACAACTGATCGAAAAAGGTCGTAACTGCTCAAGCGAATCGATTTGATTT
CTTCGATTAAACTCAACTTCTCCTAACGAATGCGTTTTACCCGATTTGCG
TCGTAAATTATGTCGGAGTCCTTTGTCGGTGTATTTTCCAGCTAACGCCG
TCAAAATTGCCGTCAACCATTCGTTACGTTCGTCAGCCATGAAACAAAAC
AGGTTCAAGGAACGCCGTAATTCAGTCGACGTCATACGTAAATAAAATCG
TTTACGTAATCCACGTTTTTCCTCGTCTATTGTTACGGCAAGCCCGCTTA
ACGGGATAACGTCATTTGGTATCGAATCTAGGTCACCGCGCCTTTTGTAG
CAATACAAATGTTCATTGGTGAGTATAAAATACTTAGCTTTCATCGCCCA
CGGCTTCCATACCGATGAACTTTGCACAAACATATATCCTTCTCGTATAT
TCGTTTGATTTTCATCCGTATCCATATTTTTATTccgatttttcatattt
tgtaatttttatgtGTATGGTGTAACCCTGTAGATAGGTTTCGTATTCAG
ATCGTATATACAGAACTCTATTTCACGGTTTCTGCTATTTATATTTGTGT
CATCC Coding sequence (CDS) from alignment at sc0000136:105599..106553 >TCONS_00012074 ID=TCONS_00012074|Name=TCONS_00012074|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000136:105599..106553 (Clytia hemisphaerica)
ttaaattgctttataatttcttttgaacattattttgactttttgacagc
aaaaaaatattttatacaaAACACAAATAAATGACCTATAATTTAAAGAA
GGggctaaaggccggtctccacttgcgcgcgttTCGATCGCANTGTGATT
TCGTTTTAATGGTGCGCTATTACTTCCTAAATTTGAATCCACTGAAAGGT
CAGTCCTGATATTTACATCCAGtgaactggaagacatcttttTGGATGCG
TGTAATTCGGCGAATGTTTTTCGAATAGGAACAACACTCCGAGTCGGGTT
TAACGGGTCTGTCATGACCGATAAGTTCGTTAGTTCTAAACAACTGATCG
AAAAAGGTCGTAACTGCTCAAGCGAATCGATTTGATTTCTTCGATTAAAC
TCAACTTCTCCTAACGAATGCGTTTTACCCGATTTGCGTCGTAAATTATG
TCGGAGTCCTTTGTCGGTGTATTTTCCAGCTAACGCCGTCAAAATTGCCG
TCAACCATTCGTTACGTTCGTCAGCCATGAAACAAAACAGGTTCAAGGAA
CGCCGTAATTCAGTCGACGTCATACGTAAATAAAATCGTTTACGTAATCC
ACGTTTTTCCTCGTCTATTGTTACGGCAAGCCCGCTTAACGGGATAACGT
CATTTGGTATCGAATCTAGGTCACCGCGCCTTTTGTAGCAATACAAATGT
TCATTGGTGAGTATAAAATACTTAGCTTTCATCGCCCACGGCTTCCATAC
CGATGAACTTTGCACAAACATATATCCTTCTCGTATATTCGTTTGATTTT
CATCCGTATCCATATTTTTATTccgatttttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012074-exon-sc0000136-1491911889:105599..106553 | TCONS_00012074-exon-sc0000136-1491911889:105599..106553 | Clytia hemisphaerica | exon |
| TCONS_00012074-exon-sc0000136-1510915933:105599..106553 | TCONS_00012074-exon-sc0000136-1510915933:105599..106553 | Clytia hemisphaerica | exon |
| TCONS_00012074-exon-sc0000136-1575043694:105599..106553 | TCONS_00012074-exon-sc0000136-1575043694:105599..106553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:105599..106553 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
