|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012072 ID=TCONS_00012072|Name=TCONS_00012072|organism=Clytia hemisphaerica|type=transcript|length=1685bp
TTTgactatcgaagccttatgttcttacatagtttgttcttataaaaaac
gtgaatATACTCCAAATTAAAAGATGCTGCATCACTACAAGAAAGGACTT
ATAAAATCTAACATTGTTGGATTCCAATAGAAATTAGCAAAAGCACAAAT
ATCATATTATTTTAGGCACTTTTCAACTCAAAGTTATCATACGATGATGA
TAATGATACAAGCAAGCACTTAAGCTTGGTGTGCGAGATAATCCTCTGAA
ATACGGCCAAGCGTTTTCCAAGATCTTAGTATCCCAATCATGTGATCTCA
AGTCAttgttttttctcgaaaataacGTTAAACTTAAGGGTGTCAGACCC
GTTGCGGTGTAAACTTAAGATCGCTTGTaaacaaataaataatattCAAG
AAAAGAATGCCAGAGAAAATGTTAAACTGTTCTACTAGATATTCATTTAA
TAAGGGCGTTACAATTCCGCCCATGATGTACGCCAACGAACTAAGAGATC
GTCTGATTCCTTCAACATAACTTTGATGTCTCGAGGGAATCATTTTTGCG
ACAATAACGCCTAGTAGCACTTGTTCTACAGACCAACTCATTCCATTGGT
GATCGTGTAGAAACCAAGAAAAGAAATTCCAACGTACCCAACTTGGCTCA
ACAAGGCCGACAACGCCAACGATTGGATTGCCATAACAAATACGGCAAGT
CCTCCTATAATGACGTACATCTCATTATTCTGTAAGTTGATTTTACTTAA
AACGAAAATTAACATTAACAAAAACACAATCCCATTTGCTGAATAAAGTA
TAGCAACGATTTGAACTTTCATTCTGAAGTAGTTTGCACAAATAAACGCT
AACGCGACGTCATAATATGCAACACCGGCATACGCACACAAAAAGCTTAC
GGAAAGGATAATTCGAAATTCGTTTGAAGACAACAATCGTTTGATAGTCA
TTTGTCCCTTATTCGTCTCCTCGCATTTCTCTTCAGGAAGATCGTTTTCT
TTTTGAGTCTCAGCTTTCAAATCATACTCTTTAGATAAATTTCGGACGAA
AAGCCAATTCATGAAAATACAAATCCACCAGATAAATCCAATACAAAGAG
TTGGTAAATTTGTAATCGTGAGATGAATGCCCATCAAATGAATATCCACG
TTACTGAATATTAAACTAAAGACAGGTCCAATTAGAAAAGTTACATAATA
ACTTGATACAAGAATTGACACTTTCTCAACAGCTTCATGTTCTGGGTACA
CTCTTAATACTTCGCCAAAGCTGACAGTAAACAAAGCATTGGCAAATCCT
TGTAAAGACCGTCCCACAAATGGAAAGACCACGGAGAAAGGTATAGTAta
caaaaaatttccaagtgaaacCACAAAAAACCCAAAGTAAAAACACCTCT
TGATATCTCGAGTTCGATCTGCATATTTAGTGATGGTCAGATTGCCAATC
ACTGAGGAAATCCAATAAACTGCCGTTATCAATGCAAaccatgttttttc
attttccaccTTGATGACGTCACGTAAATAAGTCAACAAAGATGGCACCA
CGATTGAGTATTCGGTACCAGTTAAGCcaagaaagaaacaaaatacAATG
AAAGTTCTTTTTCTTGAAGCTTCCCATTTCTTAATATCTACATTCTTCAT
TGCAGTCACTCCTTTTTATTTGACTGCTGCTTCCC Run BLAST on NCBI protein sequence of TCONS_00012072-protein >TCONS_00012072-protein ID=TCONS_00012072-protein|Name=TCONS_00012072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MKNVDIKKWEASRKRTFIVFCFFLGLTGTEYSIVVPSLLTYLRDVIKVEN
EKTWFALITAVYWISSVIGNLTITKYADRTRDIKRCFYFGFFVVSLGNFL
YTIPFSVVFPFVGRSLQGFANALFTVSFGEVLRVYPEHEAVEKVSILVSS
YYVTFLIGPVFSLIFSNVDIHLMGIHLTITNLPTLCIGFIWWICIFMNWL
FVRNLSKEYDLKAETQKENDLPEEKCEETNKGQMTIKRLLSSNEFRIILS
VSFLCAYAGVAYYDVALAFICANYFRMKVQIVAILYSANGIVFLLMLIFV
LSKINLQNNEMYVIIGGLAVFVMAIQSLALSALLSQVGYVGISFLGFYTI
TNGMSWSVEQVLLGVIVAKMIPSRHQSYVEGIRRSLSSLAYIMGGIVTPL
LNEYLVEQFNIFSGILFLNIIYLFTSDLKFTPQRV Run BLAST on NCBI transcript from alignment at sc0000136:83015..84699 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012072 ID=TCONS_00012072|Name=TCONS_00012072|organism=Clytia hemisphaerica|type=transcript|length=1685bp|location=Sequence derived from alignment at sc0000136:83015..84699 (Clytia hemisphaerica)
GGGAAGCAGCAGTCAAATAAAAAGGAGTGACTGCAATGAAGAATGTAGAT
ATTAAGAAATGGGAAGCTTCAAGAAAAAGAACTTTCATTgtattttgttt
ctttcttgGCTTAACTGGTACCGAATACTCAATCGTGGTGCCATCTTTGT
TGACTTATTTACGTGACGTCATCAAggtggaaaatgaaaaaacatggtTT
GCATTGATAACGGCAGTTTATTGGATTTCCTCAGTGATTGGCAATCTGAC
CATCACTAAATATGCAGATCGAACTCGAGATATCAAGAGGTGTTTTTACT
TTGGGTTTTTTGTGgtttcacttggaaattttttgtaTACTATACCTTTC
TCCGTGGTCTTTCCATTTGTGGGACGGTCTTTACAAGGATTTGCCAATGC
TTTGTTTACTGTCAGCTTTGGCGAAGTATTAAGAGTGTACCCAGAACATG
AAGCTGTTGAGAAAGTGTCAATTCTTGTATCAAGTTATTATGTAACTTTT
CTAATTGGACCTGTCTTTAGTTTAATATTCAGTAACGTGGATATTCATTT
GATGGGCATTCATCTCACGATTACAAATTTACCAACTCTTTGTATTGGAT
TTATCTGGTGGATTTGTATTTTCATGAATTGGCTTTTCGTCCGAAATTTA
TCTAAAGAGTATGATTTGAAAGCTGAGACTCAAAAAGAAAACGATCTTCC
TGAAGAGAAATGCGAGGAGACGAATAAGGGACAAATGACTATCAAACGAT
TGTTGTCTTCAAACGAATTTCGAATTATCCTTTCCGTAAGCTTTTTGTGT
GCGTATGCCGGTGTTGCATATTATGACGTCGCGTTAGCGTTTATTTGTGC
AAACTACTTCAGAATGAAAGTTCAAATCGTTGCTATACTTTATTCAGCAA
ATGGGATTGTGTTTTTGTTAATGTTAATTTTCGTTTTAAGTAAAATCAAC
TTACAGAATAATGAGATGTACGTCATTATAGGAGGACTTGCCGTATTTGT
TATGGCAATCCAATCGTTGGCGTTGTCGGCCTTGTTGAGCCAAGTTGGGT
ACGTTGGAATTTCTTTTCTTGGTTTCTACACGATCACCAATGGAATGAGT
TGGTCTGTAGAACAAGTGCTACTAGGCGTTATTGTCGCAAAAATGATTCC
CTCGAGACATCAAAGTTATGTTGAAGGAATCAGACGATCTCTTAGTTCGT
TGGCGTACATCATGGGCGGAATTGTAACGCCCTTATTAAATGAATATCTA
GTAGAACAGTTTAACATTTTCTCTGGCATTCTTTTCTTGaatattattta
tttgtttACAAGCGATCTTAAGTTTACACCGCAACGGGTCTGACACCCTT
AAGTTTAACgttattttcgagaaaaaacaaTGACTTGAGATCACATGATT
GGGATACTAAGATCTTGGAAAACGCTTGGCCGTATTTCAGAGGATTATCT
CGCACACCAAGCTTAAGTGCTTGCTTGTATCATTATCATCATCGTATGAT
AACTTTGAGTTGAAAAGTGCCTAAAATAATATGATATTTGTGCTTTTGCT
AATTTCTATTGGAATCCAACAATGTTAGATTTTATAAGTCCTTTCTTGTA
GTGATGCAGCATCTTTTAATTTGGAGTATattcacgttttttataagaac
aaactatgtaagaacataaggcttcgatagtcAAA Coding sequence (CDS) from alignment at sc0000136:83015..84699 >TCONS_00012072 ID=TCONS_00012072|Name=TCONS_00012072|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0000136:83015..84699 (Clytia hemisphaerica)
ATGAAGAATGTAGATATTAAGAAATGGGAAGCTTCAAGAAAAAGAACTTT
CATTgtattttgtttctttcttgGCTTAACTGGTACCGAATACTCAATCG
TGGTGCCATCTTTGTTGACTTATTTACGTGACGTCATCAAggtggaaaat
gaaaaaacatggtTTGCATTGATAACGGCAGTTTATTGGATTTCCTCAGT
GATTGGCAATCTGACCATCACTAAATATGCAGATCGAACTCGAGATATCA
AGAGGTGTTTTTACTTTGGGTTTTTTGTGgtttcacttggaaattttttg
taTACTATACCTTTCTCCGTGGTCTTTCCATTTGTGGGACGGTCTTTACA
AGGATTTGCCAATGCTTTGTTTACTGTCAGCTTTGGCGAAGTATTAAGAG
TGTACCCAGAACATGAAGCTGTTGAGAAAGTGTCAATTCTTGTATCAAGT
TATTATGTAACTTTTCTAATTGGACCTGTCTTTAGTTTAATATTCAGTAA
CGTGGATATTCATTTGATGGGCATTCATCTCACGATTACAAATTTACCAA
CTCTTTGTATTGGATTTATCTGGTGGATTTGTATTTTCATGAATTGGCTT
TTCGTCCGAAATTTATCTAAAGAGTATGATTTGAAAGCTGAGACTCAAAA
AGAAAACGATCTTCCTGAAGAGAAATGCGAGGAGACGAATAAGGGACAAA
TGACTATCAAACGATTGTTGTCTTCAAACGAATTTCGAATTATCCTTTCC
GTAAGCTTTTTGTGTGCGTATGCCGGTGTTGCATATTATGACGTCGCGTT
AGCGTTTATTTGTGCAAACTACTTCAGAATGAAAGTTCAAATCGTTGCTA
TACTTTATTCAGCAAATGGGATTGTGTTTTTGTTAATGTTAATTTTCGTT
TTAAGTAAAATCAACTTACAGAATAATGAGATGTACGTCATTATAGGAGG
ACTTGCCGTATTTGTTATGGCAATCCAATCGTTGGCGTTGTCGGCCTTGT
TGAGCCAAGTTGGGTACGTTGGAATTTCTTTTCTTGGTTTCTACACGATC
ACCAATGGAATGAGTTGGTCTGTAGAACAAGTGCTACTAGGCGTTATTGT
CGCAAAAATGATTCCCTCGAGACATCAAAGTTATGTTGAAGGAATCAGAC
GATCTCTTAGTTCGTTGGCGTACATCATGGGCGGAATTGTAACGCCCTTA
TTAAATGAATATCTAGTAGAACAGTTTAACATTTTCTCTGGCATTCTTTT
CTTGaatattatttatttgtttACAAGCGATCTTAAGTTTACACCGCAAC
GGGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012072-exon-sc0000136-1491911889:83015..84699 | TCONS_00012072-exon-sc0000136-1491911889:83015..84699 | Clytia hemisphaerica | exon |
| TCONS_00012072-exon-sc0000136-1510915933:83015..84699 | TCONS_00012072-exon-sc0000136-1510915933:83015..84699 | Clytia hemisphaerica | exon |
| TCONS_00012072-exon-sc0000136-1575043694:83015..84699 | TCONS_00012072-exon-sc0000136-1575043694:83015..84699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:83015..84699 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
