TCONS_00012070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012070
Unique NameTCONS_00012070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012070 ID=TCONS_00012070|Name=TCONS_00012070|organism=Clytia hemisphaerica|type=transcript|length=401bp
CTCTATCTTTGGGTAACTTTATTCTGTTTGAGGGTTATTTTGAATGTCCA
GGGGGTCAACTGATGCTTGTCTGTGGGGTTACACCTGCTGGTCAGGGGGT
CAAAAGTCACAATGTCTGGGGGTAAATTTCCAAATATTATATCCTttccc
ccatattcaaattttttctgaaagagcccATATTTGTGTCATATTACATG
AGTGTTAAAATACAGTACACAATATTTTGTGATGGTGGTACACCCACAGG
AATGTTCCAAATTTTAATTACCGGGAAATcagggaaaccggttcaccatg
TGGATTAAAAGCATACAGAATGGAACCTGACAGAAGTTTTTGAACAAGAT
TTTTTTAGATAAAGCTacaagaggttcattacttctAAATTTTAAAACCT
A
Run BLAST on NCBI

transcript from alignment at sc0000136:15367..15767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012070 ID=TCONS_00012070|Name=TCONS_00012070|organism=Clytia hemisphaerica|type=transcript|length=401bp|location=Sequence derived from alignment at sc0000136:15367..15767 (Clytia hemisphaerica)
TAGGTTTTAAAATTTagaagtaatgaacctcttgtAGCTTTATCTAAAAA
AATCTTGTTCAAAAACTTCTGTCAGGTTCCATTCTGTATGCTTTTAATCC
AcatggtgaaccggtttccctgATTTCCCGGTAATTAAAATTTGGAACAT
TCCTGTGGGTGTACCACCATCACAAAATATTGTGTACTGTATTTTAACAC
TCATGTAATATGACACAAATATgggctctttcagaaaaaatttgaatatg
ggggaaAGGATATAATATTTGGAAATTTACCCCCAGACATTGTGACTTTT
GACCCCCTGACCAGCAGGTGTAACCCCACAGACAAGCATCAGTTGACCCC
CTGGACATTCAAAATAACCCTCAAACAGAATAAAGTTACCCAAAGATAGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006781XLOC_006781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012070-exon-sc0000136-1491911889:15367..15767TCONS_00012070-exon-sc0000136-1491911889:15367..15767Clytia hemisphaericaexon
TCONS_00012070-exon-sc0000136-1510915933:15367..15767TCONS_00012070-exon-sc0000136-1510915933:15367..15767Clytia hemisphaericaexon
TCONS_00012070-exon-sc0000136-1575043694:15367..15767TCONS_00012070-exon-sc0000136-1575043694:15367..15767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:15367..15767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440028	0.18019	2.04084	1.84218	0.498372	0.19691	0.549594	0.667213	0.716967	1.09227	0.274777	0.434191	0.495078	0.793671	0.338953	0.225199	0.416141	0.592436	0	0	0.205331	0.261426	0.211865	0.192616	0.39678	0.177058	1.78429	0.982347	0.410183	0.208956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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