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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012064 ID=TCONS_00012064|Name=TCONS_00012064|organism=Clytia hemisphaerica|type=transcript|length=2034bpRun BLAST on NCBI protein sequence of TCONS_00012064-protein >TCONS_00012064-protein ID=TCONS_00012064-protein|Name=TCONS_00012064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MSHHHYQGQGGARNSPKHLNSPLTSKQVTPKQFSSNEIFKQHNPVANKVDRun BLAST on NCBI transcript from alignment at sc0000136:460910..513597- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012064 ID=TCONS_00012064|Name=TCONS_00012064|organism=Clytia hemisphaerica|type=transcript|length=52688bp|location=Sequence derived from alignment at sc0000136:460910..513597- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000136:460910..513597- >TCONS_00012064 ID=TCONS_00012064|Name=TCONS_00012064|organism=Clytia hemisphaerica|type=CDS|length=27258bp|location=Sequence derived from alignment at sc0000136:460910..513597- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012064 vs. Swiss-Prot (Human)
Match: LRC49 (Leucine-rich repeat-containing protein 49 OS=Homo sapiens GN=LRRC49 PE=2 SV=2) HSP 1 Score: 363.229 bits (931), Expect = 1.253e-114 Identity = 261/616 (42.37%), Postives = 373/616 (60.55%), Query Frame = 3
Query: 297 SPSAPGIPIIYRLEEERKSNPDKLNLDRRKLSVFPXXXXXXXXXXXXXQHNTITRIQHLSMLRKLIFLDLYDNHIDEISGLAALKCLRVLMLGKNRIRKIINXXXXXXXXXXXXXGNKISKIENLSMLHQLRVLNLAGNDLTEVKNLNGLMSLSELNLRRNQIKAVVGLDTLPSLQRIFLSYNEIKSFDDISCLGKSTSLVDLALDNNPLANQSNYKQAILQSIVSLRQLDMKRLTEEEKRIAQVLAXXXXXXXXXXXXXXXXXXXXXLAISNAQRQWDKQFNIGRRRSNAKDSSDLKNSS--RSDTYVHGITSTRAFWGSSPEMKEYNSC---------HLAELDNNVLNLYGPRSLDALDKNWGEKNNSSIEAISFKFIQFRDIIPKLKIVKDKFLGLQSLRFEATNIVSLNELNHLDILPQLAHLHID-ENNPVTQLKHWKEYVIFKLRQSSTALKTLNDEQITQPDMEEGQRIFGSLQTILQNELPSH-----LQDTAYVRTWHNFYNKGPHQSDEEAKNQDSNDEESFSQN----------------------------YIREIVQDSILTSRRLSHFERLWPHMLQEIVTKYTKDIMNVDAYCKMSLDKI 2009
S S PI+ R EE+ D+L+L+R+KL+V P++ GE++LRLLN QHN ITRIQ++S L+KLI LDLYDN I+EISGL+ L+CLRVL+LGKNRI+KI NL +LK LDVLDLHGN+I+KIEN++ L +LRVLNLA N L+ V NLNGL SL+ELNLR NQI V +D LP LQ +FLS+N I SFD +SCL S+SL D+ D NP+A +S YK +LQ+++ LRQLDMKR+TEEE+R+A VLA+KEEEK++ES + S +KEK+RL I+N RQWD Q +R +N + D K+S + + G T + + P N+ +L E+D + L+LYG +L++LD+NW + I +SF FI+F +I+ L +K KF L+F+ TN+V L + N L L ++ L ID + NPV WK YV+F+L S +++ +N ++TQ DM +R+FG L + +ELP + L D + + +KG +N DS + N YI ++V+++ + + ++LWP M E+V +I N ++Y K+ L +I
Sbjct: 72 SSSLSSFPILQRSSEEKILYSDRLSLERQKLTVCPIINGEDHLRLLNFQHNFITRIQNISNLQKLISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEKKRESHKQSLLKEKKRLTINNVARQWDLQ---QQRVANIATNEDRKDSDSPQDPCQIDGSTLSAFPEETGPLDSGLNNALQGLSVIDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMITTVSFTFIEFDEIVQVLPKLKIKFPNSLHLKFKETNLVMLQQFNALAQLRRIDQLTIDPQGNPVVNFTLWKYYVLFRL--SHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRLISILGDARKKQFRYLLESKGKKPGIINEENNDSKRLVGENTNRATLNYTTRDFYNEKLEEIKEKKKFCKTYIEDLVKEATEINMKNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQI 682 The following BLAST results are available for this feature:
BLAST of TCONS_00012064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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