|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012062 ID=TCONS_00012062|Name=TCONS_00012062|organism=Clytia hemisphaerica|type=transcript|length=1994bpRun BLAST on NCBI transcript from alignment at sc0000136:460910..513596- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012062 ID=TCONS_00012062|Name=TCONS_00012062|organism=Clytia hemisphaerica|type=transcript|length=52687bp|location=Sequence derived from alignment at sc0000136:460910..513596- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012062 vs. Swiss-Prot (Human)
Match: LRC49 (Leucine-rich repeat-containing protein 49 OS=Homo sapiens GN=LRRC49 PE=2 SV=2) HSP 1 Score: 360.147 bits (923), Expect = 1.500e-113 Identity = 260/613 (42.41%), Postives = 372/613 (60.69%), Query Frame = 2
Query: 296 SPSAPGIPIIYRLEEERKSNPDKLNLDRRKLSVFPXXXXXXXXXXXXXQHNTITRIQHLSMLRKLIFLDLYDNHIDEISGLAALKCLRVLMLGKNRIRKIINXXXXXXXXXXXXXGNKISKIENLSMLHQLRVLNLAGNDLTEVKNLNGLMSLSELNLRRNQIKAVVGLDTLPSLQRIFLSYNEIKSFDDISCLGKSTSLVDLALDNNPLANQSNYKQAILQSIVSLRQLDMKRLTEEEKRIAQVLAXXXXXXXXXXXXXXXXXXXXXLAISNAQRQWDKQ--------FNIGRRRSNA-KDSSDLKNSSRS---DTSSPEMKEYNSC---------HLAELDNNVLNLYGPRSLDALDKNWGEKNNSSIEAISFKFIQFRDIIPKLKIVKDKFLGLQSLRFEATNIVSLNELNHLDILPQLAHLHID-ENNPVTQLKHWKEYVIFKLRQSSTALKTLNDEQITQPDMEEGQRIFGSLQTILQNELPSH-----LQDTAYVRTWHNFYNKGPHQSDEEAKNQDSNDEESFSQN----------------------------YIREIVQDSILTSRRLSHFERLWPHMLQEIVTKYTKDIMNVDAYCKMSLDKI 1969
S S PI+ R EE+ D+L+L+R+KL+V P++ GE++LRLLN QHN ITRIQ++S L+KLI LDLYDN I+EISGL+ L+CLRVL+LGKNRI+KI NL +LK LDVLDLHGN+I+KIEN++ L +LRVLNLA N L+ V NLNGL SL+ELNLR NQI V +D LP LQ +FLS+N I SFD +SCL S+SL D+ D NP+A +S YK +LQ+++ LRQLDMKR+TEEE+R+A VLA+KEEEK++ES + S +KEK+RL I+N RQWD Q N R+ S++ +D + S+ S + + P N+ +L E+D + L+LYG +L++LD+NW + I +SF FI+F +I+ L +K KF L+F+ TN+V L + N L L ++ L ID + NPV WK YV+F+L S +++ +N ++TQ DM +R+FG L + +ELP + L D + + +KG +N DS + N YI ++V+++ + + ++LWP M E+V +I N ++Y K+ L +I
Sbjct: 72 SSSLSSFPILQRSSEEKILYSDRLSLERQKLTVCPIINGEDHLRLLNFQHNFITRIQNISNLQKLISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEKKRESHKQSLLKEKKRLTINNVARQWDLQQQRVANIATNEDRKDSDSPQDPCQIDGSTLSAFPEETGPLDSGLNNALQGLSVIDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMITTVSFTFIEFDEIVQVLPKLKIKFPNSLHLKFKETNLVMLQQFNALAQLRRIDQLTIDPQGNPVVNFTLWKYYVLFRL--SHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRLISILGDARKKQFRYLLESKGKKPGIINEENNDSKRLVGENTNRATLNYTTRDFYNEKLEEIKEKKKFCKTYIEDLVKEATEINMKNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQI 682 The following BLAST results are available for this feature:
BLAST of TCONS_00012062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.