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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012057 ID=TCONS_00012057|Name=TCONS_00012057|organism=Clytia hemisphaerica|type=transcript|length=1733bp
CtagcaaattgataaaaacaaaaaagccaTGTACAGAACGCCATCTTTGA
AAGTGGTGTTTGCTTACGACGAAGATGAACATTATGCTCCTCCACACAAA
ATTAGTTGGGTGACAAGAGCCAAACGTACGTCAAACGAAAGATGGATTTT
CATTCAGTGCTGTGGTCAAATGGGAAACGTAGAAATAAGAGGTGAAAAGA
AGTTAATTACAAGCCGTCATCCATGCAAAGGAAATTTGTTTTCAAGCCAG
CTGTCAGCCACGGAAAAACACCACACCGGAAGGATGGTTTTAATGAGAAC
TAACCACAGCCAAATCATAAAGCATTGTCCTCCACTAGCAAGATGGAATT
GTTGTCGAGCTGAACTTCCAAGTTGGAACGGCAGATGGGATAGCAAGGAT
CTCAGAATACCATTCACGTATGTAGACACTGGATGCAAAGAGGGTCGATA
TCAGTTCACTGGATGTattgacagtgatgatgatgatgataatgatgTTT
ATGATTTTGCAATGTGTGCAAGGCCTCTAGGATCCATTACGAaagagaaa
tctaaaaaatcatcaaatggcCCTTCATCAGGAGATCAAACTTTCGTAAT
CGAAAATGAGAAATTGATGAATCCTGGTGTTATTGAATTTACACAGCAAT
CTGTTTTGAAAACCTTCACTGACCCACTGAAACCATCACTCTTGGACGCC
ATGCAGCAAATCTTTGATGGTGAGATCGAAATTGACGATTTCCCCTCAAT
ACGAGTTGCAACTCGTGATAATACAACTTCCATAGGAGGCTTTTACACCT
GCGATAATAGAAGATTACTCATGTTCAAAGTTTTACGTATCAAGAAAATC
TACGTTCAATGGATTGGATGGACCAGTGAGTTTGATGATAAATTGCgaca
aaacatcaaaatagaTCCAGAGACCAGAGTTGCAACAAACGATGAAGGAA
TCGTCGATTTCAGGGATGATTTTATCGACCATTATTGTGAGCATAGTGTT
CTCAACCATGGCGATTCACTGTTCTACATCCCTGAGAAATTTGCTGGTTA
TCTAATCGGTACTAATGGAGCGACcataagaaaaaaatgtcagaagtATG
CTACTCATATCACTGTACGAGAGCTATCAAAGAGTCATCGTGTTAATACT
TTTACTGACGTGATGAAAATTTCTTATAGTGAGGATGCGGAATCACGTAA
GGAATACGTCCCCGGTAACGCAAAGAAAGAACACGTTAAAATGGTACGTA
AACTGGCTAGAAGAAATTACCTAGAAGAACTTGCACTTGATGCATGTGAA
ACAACGTCCCCGATTTGAATGTAAAGAATTATCCCGATATTTTCCCCAAA
GCGAACATTTCCCTAATATGAATATTTCCCTATAATGGATATTTTCTTGA
ATCGACAATTCTTAAAAAACGGACGTTATGTTAGGCAAGTTATCATTTAA
AGGTGTTAAAAACGGATTAATTTGATGATTAACATTTATAGTCTGGATGg
taaaaatttagttaaaaaatctgaaaaagtatTAAATTTTATCATCGAAT
TTATAATTAAGAAGAACTTCATCTAAGTTCAAATGACTGACCCAATCAGA
AGGCAAAAtacccgggggggtactagggttggtgaatgaggggtatgtgc
ggacgggacctccgaaaaccgacccttatagagaccaaattttagtgaaa
aagtgacccttagagagactttttcgaaaaatg Run BLAST on NCBI transcript from alignment at sc0000136:423176..425894- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012057 ID=TCONS_00012057|Name=TCONS_00012057|organism=Clytia hemisphaerica|type=transcript|length=2719bp|location=Sequence derived from alignment at sc0000136:423176..425894- (Clytia hemisphaerica)
CTAGCAAATTGATAAAAACAAAAAAGCCATGTACAGAACGCCATCTTTGA
AAGTGGTGTTTGCTTACGACGAAGATGAACATTATGCTCCTCCACACAAA
ATTAGTTGGGTGACAAGAGCCAAACGTACGTCAAACGAAAGATGGATTTT
CATTCAGTGCTGTGGTCAAATGGGAAACGTAGAAATAAGAGGTAACTCAG
ATTATTTCACAAAAGATATTTGTAATTTCCCATGAGAATCGTTTTCTAAC
GTTTTTGCTTCATCTGTCAACTGGAGCAACAGGATTTCAATGGAATTTAT
TAATAACCCAAAGATAACACAAGTTCTTCTAACGTTATCTGGACGGTAGA
TGGTGTTAAATACGTGTTATTTTTTTGACTTTGTGCTGACGTAAGCGTAA
TGGCACCATTATTTAGCGCTTTAGTAGTGTTAGTGTTGTTAAATTTGTTA
AATGGTCATCGCTCTTAACTCACGTCTGGGAGGACCGAGTTCAATGCTCA
CCGTATTACGGTGAAAGTACAATCATGGACAAAAGGTTGTAGACAAATGA
AATTTCAGTGAAAAATGATGAGAAATAGAGCAAAATGACTCTTCAATGTG
TCTGAAAGAGGAGGGAAGTTAAGAAAAACGCTTTTGAAGTCGTTGCATTG
CTTTTGAATTGCTTTTGAGGGAACCACAAACAAAAAATCAGCGTTTTGAT
ACTGGTGTAAGCCAGTTAAGGTGACTTTGAAAGACTTTGAACAGCTTTGG
ATGGGTTTGGAAAGCACCCAGAACCTCTTGGGAACTTGTTTGCAATCGAT
ATTGTATTGTATTGTATTTTGCAAATATTGCAGAAGTCTATAAACCCTTT
GTCCATGATTGTAGCTTCGTCCTGGTCAACCCATACCATGTTAGGGGAAT
TCAGTACCATTACTATAAGACATGAGTGTTGGTGGATGTTCCAGAATTTT
GACGTGCTACTCTCCACAGGTTCGACCTTACGTTGTCGTTCGAGGCTCTA
AAGTATACACTTATGACTAGACAGCTTGCATTTGTAGAATCGCAACGCTT
TTATACGCTGTGATTCGTTCTCCCACGTGAGTAGGATCCAATCTGAGAAA
TCGGAGGATATATATCTATCCTAAATGTTGTTTTGACGTTATGTGTCAAC
TATCAATATCAATCCTTCTATTATCAGGTGAAAAGAAGTTAATTACAAGC
CGTCATCCATGCAAAGGAAATTTGTTTTCAAGCCAGCTGTCAGCCACGGA
AAAACACCACACCGGAAGGATGGTTTTAATGAGAACTAACCACAGCCAAA
TCATAAAGCATTGTCCTCCACTAGCAAGATGGAATTGTTGTCGAGCTGAA
CTTCCAAGTTGGAACGGCAGATGGGATAGCAAGGATCTCAGAATACCATT
CACGTATGTAGACACTGGATGCAAAGAGGGTCGATATCAGTTCACTGGAT
GTATTGACAGTGATGATGATGATGATAATGATGTTTATGATTTTGCAATG
TGTGCAAGGCCTCTAGGATCCATTACGAAAGAGAAATCTAAAAAATCATC
AAATGGCCCTTCATCAGGAGATCAAACTTTCGTAATCGAAAATGAGAAAT
TGATGAATCCTGGTGTTATTGAATTTACACAGCAATCTGTTTTGAAAACC
TTCACTGACCCACTGAAACCATCACTCTTGGACGCCATGCAGCAAATCTT
TGATGGTGAGATCGAAATTGACGATTTCCCCTCAATACGAGTTGCAACTC
GTGATAATACAACTTCCATAGGAGGCTTTTACACCTGCGATAATAGAAGA
TTACTCATGTTCAAAGTTTTACGTATCAAGAAAATCTACGTTCAATGGAT
TGGATGGACCAGTGAGTTTGATGATAAATTGCGACAAAACATCAAAATAG
ATCCAGAGACCAGAGTTGCAACAAACGATGAAGGAATCGTCGATTTCAGG
GATGATTTTATCGACCATTATTGTGAGCATAGTGTTCTCAACCATGGCGA
TTCACTGTTCTACATCCCTGAGAAATTTGCTGGTTATCTAATCGGTACTA
ATGGAGCGACCATAAGAAAAAAATGTCAGAAGTATGCTACTCATATCACT
GTACGAGAGCTATCAAAGAGTCATCGTGTTAATACTTTTACTGACGTGAT
GAAAATTTCTTATAGTGAGGATGCGGAATCACGTAAGGAATACGTCCCCG
GTAACGCAAAGAAAGAACACGTTAAAATGGTACGTAAACTGGCTAGAAGA
AATTACCTAGAAGAACTTGCACTTGATGCATGTGAAACAACGTCCCCGAT
TTGAATGTAAAGAATTATCCCGATATTTTCCCCAAAGCGAACATTTCCCT
AATATGAATATTTCCCTATAATGGATATTTTCTTGAATCGACAATTCTTA
AAAAACGGACGTTATGTTAGGCAAGTTATCATTTAAAGGTGTTAAAAACG
GATTAATTTGATGATTAACATTTATAGTCTGGATGGTAAAAATTTAGTTA
AAAAATCTGAAAAAGTATTAAATTTTATCATCGAATTTATAATTAAGAAG
AACTTCATCTAAGTTCAAATGACTGACCCAATCAGAAGGCAAAATACCCG
GGGGGGTACTAGGGTTGGTGAATGAGGGGTATGTGCGGACGGGACCTCCG
AAAACCGACCCTTATAGAGACCAAATTTTAGTGAAAAAGTGACCCTTAGA
GAGACTTTTTCGAAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012057-exon-sc0000136-1575043694:425704..425894 | TCONS_00012057-exon-sc0000136-1575043694:425704..425894 | Clytia hemisphaerica | exon |
| TCONS_00012057-exon-sc0000136-1575043694:423176..424717 | TCONS_00012057-exon-sc0000136-1575043694:423176..424717 | Clytia hemisphaerica | exon |
| TCONS_00012057-exon-sc0000136-1510915933:425704..425894 | TCONS_00012057-exon-sc0000136-1510915933:425704..425894 | Clytia hemisphaerica | exon |
| TCONS_00012057-exon-sc0000136-1510915933:423176..424717 | TCONS_00012057-exon-sc0000136-1510915933:423176..424717 | Clytia hemisphaerica | exon |
| TCONS_00012057-exon-sc0000136-1491911889:425704..425894 | TCONS_00012057-exon-sc0000136-1491911889:425704..425894 | Clytia hemisphaerica | exon |
| TCONS_00012057-exon-sc0000136-1491911889:423176..424717 | TCONS_00012057-exon-sc0000136-1491911889:423176..424717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:423176..425894 - |
Blast
The following BLAST results are available for this feature:
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