TCONS_00012043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012043
Unique NameTCONS_00012043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012043 ID=TCONS_00012043|Name=TCONS_00012043|organism=Clytia hemisphaerica|type=transcript|length=633bp
TTATTTTCTAGTTATATCACAACGAAAATGAGTTTCAATGGTTGGATTTT
CCTATTCACCTTAATGGCCAGTTATCGTTTCAGCGAAGAAGTACCTCATT
TTCGTTTACACACGAAAAACTCTACAACCAATCAAAATCCTTCATCTCAA
TCACATGTCAACTCgacatccaatcagaattctcGATTTTGGTCACGTGC
AAACTCATCAGCCAATGAAATGATGTTTTACAAACCTGGTGATGTCATAC
AACAAGGACATAACGAGACGAGCCCATTGTGTGGTAATGGAAGAGCAAGT
TGTAATCTTTACATTCGAAGGATGATCTACTTTTATAAAGTGCTGGGCGG
TTGGCTTCTATTAGGTGTCATCGTTCTTGGTTTGTTGTCATTGTGGGCGT
CAGTACTGTATGGGCGTTACCTTGAAAGAAAATACCTTCTCTCCAATCCA
AATCACAAATGGGCGTTTAGTAAAGAACTGATTTACAAAGTGAAAGGGCG
TACAAAGGGCGTACGATTACATCATAGTTCGCATCACCGCCATCGTTATA
ATGAAGAAGATACGAGCCCGTTTATGTTCCATCCAAGATCGAAATCAATG
CCTTGATAGTGCACCATCTAATTTTAAAAGGGC
Run BLAST on NCBI

protein sequence of TCONS_00012043-protein

>TCONS_00012043-protein ID=TCONS_00012043-protein|Name=TCONS_00012043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
LFSSYITTKMSFNGWIFLFTLMASYRFSEEVPHFRLHTKNSTTNQNPSSQ
SHVNSTSNQNSRFWSRANSSANEMMFYKPGDVIQQGHNETSPLCGNGRAS
CNLYIRRMIYFYKVLGGWLLLGVIVLGLLSLWASVLYGRYLERKYLLSNP
NHKWAFSKELIYKVKGRTKGVRLHHSSHHRHRYNEEDTSPFMFHPRSKSM
P
Run BLAST on NCBI

transcript from alignment at sc0000136:184288..188977-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012043 ID=TCONS_00012043|Name=TCONS_00012043|organism=Clytia hemisphaerica|type=transcript|length=4690bp|location=Sequence derived from alignment at sc0000136:184288..188977- (Clytia hemisphaerica)
TTATTTTCTAGTTATATCACAACGAAAATGAGTTTCAATGGTTGGATTTT
CCTATTCACCTTAATGGCCAGTTATCGTTTCAGCGAAGAAGTACCTCATT
TTCGTTTACACACGAAAAACTCTACAACCAATCAAAATCCTTCATCTCAA
TCACATGTCAACTCGACATCCAATCAGAATTCTCGATTTTGGTCACGTGC
AAACTCATCAGCCAATGAAATGATGTTTTACAAACCTGGTGATGTCATAC
AACAAGGACATAACGAGACGAGCCCATTGTGTGGTAATGGAAGAGCAAGT
TGTAATCTTTACATTCGAAGGATGATCTACTTTTATAAAGTGGTGAGTGT
GGTTTTTCCTGATACACGTTGTTTAAGAACAAACTAAAGTCTANTAATTT
AGTTTGTGGTGCATTTTTCTAATTATGATTAAAACCCGACACAGCAAGAT
TTTTTGTTGTGTATCAATATGTTCTTTTTTGTAAATATTCTAGTATCTTT
TTAGGGCTTCAGGTCTCAAACATGTTTGGATAGGTATGTAGGTGTATCTC
ACTGACTTTTATAAACCCTGGACTAAAGTATGAAGGCCATCTTTGATCGG
TGCTTTTAGAANCAAACTAAAGTCTGTCTCAAAATAATTTGCAGCTGAGA
CAAAAATGGCTGTAACTTTTGATAGAATTTGAATCAAGTTGCGATTTTGT
GCTCGTTGAAAAGATAATTGTGCCAGTTGTGGAATATTATCAAGCAAAAA
AGAAATTGAAAAAAATGAAAATGAAAAATGAAGAAGAAAAAAATCAGCTT
CTTGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAGTGGTGCAC
TAGTTCAGTTTTTCTTGGAGTAAACTATCGCCAATTCAAGGGTTTTAAAT
CTTTAAAGCTCAGTTTTTCAACGGCTAGTGGACAAAAAAGTATATAGGGA
ACACTTTGAATGCTACTTTTTACTTGAGTGTTTATTTGTTGTGCAAAAAA
CGAGGGAAAAGGGATNAATAAGGTAAAAATAGGCTAAAATCAGGCTATTT
AGAGCAAAATAAGGGGCCTTCTCTTTGACAGCTGAAAATATTCTTAGACA
TTAATAAACGGGGGGGGGGTCCTAATAAGGTCCGAGGGAGTTGGAAAATT
TTCGAAAAATTAACAAGCGAGGGGGGGGGCGTTTATTTGGAACCTAAGAG
TACTGATTCAATGAAAATTCTGTTTGAAAAAGTTCTGGCCCACATAGGGT
ATAGGGGATAGTAGTGCTATCATTAGAGTACAACTTTCAAAAACTCCGAT
CAAAGATTTTGCTTGACCAGGAAACTGTGTCCAGAGTTTATAATGATCAG
TGNGGGAAATCTGCACAGATTTGTGCATTTTTCCCCTGTAAATTGAATAG
AAAAGAGCATGTAGCAGATACACGAATCCTATGAAATAGGCTAATGTATA
AAGTAACGAAGGAGGAGGAGGCGCAAGCATGGTTTGCGCCGACGGAGAAA
ATTTTCCCAATTTTGTCTTCTCGTTTGGCTAAAAGAGCTCTTTTTGAACG
TCATTAGGCCTAAATCTACCTCAGCCAAAAGCACCGTCAGAAAAGTTCGT
CACAAAAGATCTCTTGTTAGGATGATGGAAGGAAGCTTTAATGCCTGACA
CGTCGTACAAAATATTATGAATCTACGGTAAATAAAATTCGTTAAAAAAT
TAAAAGGATTTCTAACTTCAAACTCAGGATTGCAGAGTTATTTTAAGTGA
AATTCACTGGAATTTGGAAGATTCTACAGTTATGAGTGACTAAGGGGCAC
AACAATGATCGGAAAATTTTGGATACGAAGACTCTTGATTTCAGAATAGA
TGAAACTACACGTTTTTAACCCTTTCTCCAGTTTTCAGATTAGGCAAAGA
CGCCCTCGAGATTTTTCTACTAGGACGGGCCGTGAAACTGTGTAAAATAC
ATTTTAGTACATATTTTTTATAAGCAATCATGTTGCTAAATCTCAAGGTC
TCATATTAGCAGGTTTTTTTCGCTATCTCGTAAAGTGAAAGCTTTTTAGA
TAATCTAGCTATGGCAAACGATATCCCTTGATCCAATAAACATAAATAAA
TATGGTATAATATCAGGGGCGGTCAAAGTAAATTTTTCAGAAATTGAGCC
AGAATTCTAAGCAGCCCAAGGCCTGAGCCGAAAATTGGAGTTGCTTATAA
AGAAAATGTGTAGCAAGTTTTGCATGCTTACCTGACCGCAGAAGAGTACT
GTAAGGTGTTTTATTCACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCCGG
GTAAAAGAAGGCACAAGCATGGTTTGCGCCGACAGGAAAAATTCTACATT
TCTGGAAATCTCATTTGGCTAAAAAGTTCTCTTTTTCACAAATTGGTTAA
AGCTAGTCATTTTATGCCATTCAGATAAATAGCTCGTTTGATTTAGGCTG
AAACTAACTTGGTATTGACAGTCTGCAAAGGGAGCACTGCAAGGGGAGGA
CCACAGGAAGTATTTTATATTGAACAGGTTTGGCCCGAGGAGGCAAAATT
TTGTAATTTAAAGTGCCCAAAATGCTGAGAAACGCATCTAAATTATGAGT
TAATGGATTATTCCGTTAAAATGAAAGAATTAATGATTGTTGATTTTGAT
GAGTGCTGCATTTGAGATCTCGAGAAAGCTTGCCACACGCTGCAAATGCT
TTCTTTATCTGTTACCCACTGGGTAGAGTATTATGATTTTTTTTCAAAAA
GTGCACATTTCCGGTAAACAAGAGGTTAAAAAAACACCATTATTCACACA
ATTTTAAGAAAAAGAGGATGAGACAGGGTAGCTACTAAAAATAGCTATAA
TACTTCAATTCTTGTAGAGATAAGATATTCAATAGCTGAAATGCAGAAAT
GCAGATTCAAAAACATTTTTTGAGATCCTTTGAAATATGCAGATTCACCG
ACAGTATTTATCGAATTACCGAAATATNATCATAGTTCGCATCACCGCCA
TCGTTATAATGAAGAAGATACGAGCCCGTTTATGTTCCATCCAAGATCGA
AATCAATGCCTTGATAGTGCGCCATCTAATTAGAAAAGGGTTAACTGAAA
CATTAAACTTTATACACTCTAAACAAAATGCCACCGTCACAGAATGACCG
GATAAACTGCTGTTGAAATTTTTCTAAAACTTTTAGAATGGTATACTATT
TGAGATAGAAAACAATCGTCAGAAAAGAAAATGTACTTATTTCATCACTT
CAAAGGCAATAGCAATTAATAGCAAGTGCCTCAGATAAGAGGTTTGAAAA
AGTTGGAAGTCAAATTATCAATTGATTGAATATGAATCATTAGTTTTGTT
CCTTAGCCATTTTCTTGTAAAAAATGAATTTTGTAATTCCTAGGGTAATA
ATATGTACACAATATATAATATCTATATAAAAATATGACAACTGATAAGA
AAGTTCTTTNCAACTCCTTGTAGAAATGTGGTATAACTACCACTTTCACA
GGAGTGATTCTTCAATCTTAGATCATAATTACTGTGAAAAAAAAATTCAA
AAATATTCATTCAATCAAAAGACATCAAACAAAGTTTGTTATTGGTTGAT
TGACAAAAGGCTGTTTTTTGTCGTTTTTACTACTTTATAGAGTCAACCAG
CATGTAAAACATAAGGCTTTATTGTCTTTTCAGTTGGGCTGAATGAACAT
ATCTGCGTCAATTTATTTCCGTAGTACAACGTACTGTTATTCTTAGTCTG
TTTGGTCTGAATCGCAGACCTCCATAGATATAACTTTTTTTCGCTAGAGG
ATGAGCAGAAGCCTATATTGTTCTACGCTACCTTGTACGCGAGATACATT
CTGGTATCTTATAAAACTTTATAATCAGATATCTGCTTTTCATTTTTAGC
TGGGCGGTTGGCTTCTATTAGGTGTCATCGTTCTTGGTTTGTTGTCATTG
TGGGCGTCAGTACTGTATGGGCGTTACCTTGAAAGAAAATACCTTCTCTC
CAATCCAAATCACAAATGGGCGTTTAGTAAAGAACTGATTTACAAAGTGA
AAGGGCGTACAAAGGGCGTACGATTACATCATAGTTCGCATCACCGCCAT
CGTTATAATGAAGAAGATACGAGCCCGTTTATGTTCCATCCAAGATCGAA
ATCAATGCCTTGATAGTGCACCATCTAATTTTAAAAGGGC

Coding sequence (CDS) from alignment at sc0000136:184288..188977-

>TCONS_00012043 ID=TCONS_00012043|Name=TCONS_00012043|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000136:184288..188977- (Clytia hemisphaerica)
CTGGGCGGTTGGCTTCTATTAGGTGTCATCGTTCTTGGTTTGTTGTCATT
GTGGGCGTCAGTACTGTATGGGCGTTACCTTGAAAGAAAATACCTTCTCT
CCAATCCAAATCACAAATGGGCGTTTAGTAAAGAACTGATTTACAAAGTG
AAAGGGCGTACAAAGGGCGTACGATTACATCATAGTTCGCATCACCGCCA
TCGTTATAATGAAGAAGATACGAGCCCGTTTATGTTCCATCCAAGATCGA
AATCAATGCCTTGATTATTTTCTAGTTATATCACAACGAAAATGAGTTTC
AATGGTTGGATTTTCCTATTCACCTTAATGGCCAGTTATCGTTTCAGCGA
AGAAGTACCTCATTTTCGTTTACACACGAAAAACTCTACAACCAATCAAA
ATCCTTCATCTCAATCACATGTCAACTCGACATCCAATCAGAATTCTCGA
TTTTGGTCACGTGCAAACTCATCAGCCAATGAAATGATGTTTTACAAACC
TGGTGATGTCATACAACAAGGACATAACGAGACGAGCCCATTGTGTGGTA
ATGGAAGAGCAAGTTGTAATCTTTACATTCGAAGGATGATCTACTTTTAT
AAAGTGCTGGGCGGTTGGCTTCTATTAGGTGTCATCGTTCTTGGTTTGTT
GTCATTGTGGGCGTCAGTACTGTATGGGCGTTACCTTGAAAGAAAATACC
TTCTCTCCAATCCAAATCACAAATGGGCGTTTAGTAAAGAACTGATTTAC
AAAGTGAAAGGGCGTACAAAGGGCGTACGATTACATCATAGTTCGCATCA
CCGCCATCGTTATAATGAAGAAGATACGAGCCCGTTTATGTTCCATCCAA
GATCGAAATCAATGCCTTGATTATTTTCTAGTTATATCACAACGAAAATG
AGTTTCAATGGTTGGATTTTCCTATTCACCTTAATGGCCAGTTATCGTTT
CAGCGAAGAAGTACCTCATTTTCGTTTACACACGAAAAACTCTACAACCA
ATCAAAATCCTTCATCTCAATCACATGTCAACTCGACATCCAATCAGAAT
TCTCGATTTTGGTCACGTGCAAACTCATCAGCCAATGAAATGATGTTTTA
CAAACCTGGTGATGTCATACAACAAGGACATAACGAGACGAGCCCATTGT
GTGGTAATGGAAGAGCAAGTTGTAATCTTTACATTCGAAGGATGATCTAC
TTTTATAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006769XLOC_006769Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012043-proteinTCONS_00012043-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012043-exon-sc0000136-1575043694:188636..188977TCONS_00012043-exon-sc0000136-1575043694:188636..188977Clytia hemisphaericaexon
TCONS_00012043-exon-sc0000136-1575043694:184288..184578TCONS_00012043-exon-sc0000136-1575043694:184288..184578Clytia hemisphaericaexon
TCONS_00012043-exon-sc0000136-1510915933:188636..188977TCONS_00012043-exon-sc0000136-1510915933:188636..188977Clytia hemisphaericaexon
TCONS_00012043-exon-sc0000136-1510915933:184288..184578TCONS_00012043-exon-sc0000136-1510915933:184288..184578Clytia hemisphaericaexon
TCONS_00012043-exon-sc0000136-1491911889:188636..188977TCONS_00012043-exon-sc0000136-1491911889:188636..188977Clytia hemisphaericaexon
TCONS_00012043-exon-sc0000136-1491911889:184288..184578TCONS_00012043-exon-sc0000136-1491911889:184288..184578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:184288..188977 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08776	1.14233	0.757919	0.463441	0.112839	0.267501	0.322728	0.100711	0.282042	0.698708	0.0847729	0.222905	0.166947	0.173376	0	0.0509885	1.13065	1.22326	0	0.0930769	2.50792	1.89411	0.767511	0.261667	0.269511	0.801774	0	0	0.0928715	0.283864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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