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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012039 ID=TCONS_00012039|Name=TCONS_00012039|organism=Clytia hemisphaerica|type=transcript|length=1721bp
GTGCATTATACGTTCATTTCGTCCCACAATGAGGAGCTGCAGAATATACA
GAAATACAgataaatgttaaaaaaaataattttatatttttcataaatgC
AAGAACTCATCTAAACCCTATAAACAGACATATCAACCTGAAATTTCTTT
CAAGGCGGATTTCAGTTCAAAAGCTGCTCTTGATTTCCGTCTTTCCATGT
CTTCTGTATATGTCTTCAAAAAGTTATCAAAGTTTATTCCACCTCTTCTT
CGACTTCCACCTCTAAACTTTTGCTGCATCAGATAATCaataaatttaaa
gtaaaaagtgAAGATTAAGATACAAATATTTGAGATTGATTTTCCAAGAG
CTGTGTATAGTTTATCTTCAAATGGTTTCTTCTTCATTAGGAATCTCATC
ATGAAACTCATACTAAAGACGCTCAAAAATGAAGCCACAATGATAAATAA
CAAGGATTTAGATTCGTTGTAACGTGGTGGTAAATTCCTTGATCTAAAAG
CTTGAACACTTGCTACCAATAGAATCAAGAAGCAATATATAGACTTGATG
TAGATTAGATCTCCACCAACGCAATAAACTTCTCTACGTAATGTTTTTGG
GTTATAATCAGTTTGTACCAATTGGTCTGTATGTTGCAAATATACCACTG
ATGTGATCAACACATCAATTGCAATAGTGATCAAAATCACGAAATAGGTT
TTTGAGTTATTGATGAATAGATCGCGTTTGGAGAACCGATATTTTGAGTT
GAAGATTGAGATCAGCTTCTCTGATTTAGCaaggagaaatgaaaaagtca
tagtgaagatagggcttaaCACGAAATAGTAAACATGACATTGTAGAGAA
TTCGTTTCACCAACTACAACGTATACTGAGACAAGAAATAAAACCAGTTG
AACGTGAATTTGGAATAATGAGAAATTGATATCCATTGCACGTACAAATC
TCCTTGTTCTGTATGCCATAATCAATAATATTAAGCCTACAGATAAGCAT
ATACCAGTTACTGTAACCACCAAGAAAACAATATACATTTCTTTAAAATC
ACTCATTAGAGCATCTTCAAATACTAAACATTCTTTACCATCAGCTTTGG
AGTAGTTTGACTGACATTGATGACATTGTTCAAGGCCTTGTTTCTCTTTG
GCAAAGCCTGGTTTACACTTTTGACATATCCAACAACAATTTGGACCAAT
ATCCCTGAAAGGTTGTTCACCAGCACCACATACACTGGAGCAAGTGCTTC
TCAATTCAGATTGATCATAGATATCTTTTGCAATCCAGTGTGTTCCATTA
TTAGGATAAATCAATTCTCCTTTATCAGTCCTGGCAACTTCTTTGAATCT
GATGACAGTTTGTGGATCTCTGAAAATATCATATACTCTGAAATGTGGAT
AGTTCAAAGCACCGAATTCATTAAAACCAATAGACTCATCTTCAAGTCCC
TTAAATGAGACAGGTTTCAAATGATTCTCAAAATACTCTTTAATATCAAA
TTCACACTTTTCATTCTTAACTGCATCGGNAAGGTACCAAGCTAATTATC
AAATAATCACCGTCTTTGTaaaggtattttattgtttccattGGGTCACA
ATATACTGTGGTTGGATCAAGATTATGTGCTTGGTGCTGTCCAAAATAAA
TCATTGAAAGGAAGATGGTGAAGTAGCAGGTTCTTGAGTCTTTCATGGTG
ACAGAGCGTCTTTGTTTCCTT Run BLAST on NCBI transcript from alignment at sc0000136:542321..544093+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012039 ID=TCONS_00012039|Name=TCONS_00012039|organism=Clytia hemisphaerica|type=transcript|length=1773bp|location=Sequence derived from alignment at sc0000136:542321..544093+ (Clytia hemisphaerica)
GTGCATTATACGTTCATTTCGTCCCACAATGAGGAGCTGCAGAATATACA
GAAATACAgataaatgttaaaaaaaataattttatatttttcataaatgC
AAGAACTCATCTAAACCCTATAAACAGACATATCAACCTGAAATTTCTTT
CAAGGCGGATTTCAGTTCAAAAGCTGCTCTTGATTTCCGTCTTTCCATGT
CTTCTGTATATGTCTTCAAAAAGTTATCAAAGTTTATTCCACCTCTTCTT
CGACTTCCACCTCTAAACTTTTGCTGCATCAGATAATCaataaatttaaa
gtaaaaagtgAAGATTAAGATACAAATATTTGAGATTGATTTTCCAAGAG
CTGTGTATAGTTTATCTTCAAATGGTTTCTTCTTCATTAGGAATCTCATC
ATGAAACTCATACTAAAGACGCTCAAAAATGAAGCCACAATGATAAATAA
CAAGGATTTAGATTCGTTGTAACGTGGTGGTAAATTCCTTGATCTAAAAG
CTTGAACACTTGCTACCAATAGAATCAAGAAGCAATATATAGACTTGATG
TAGATTAGATCTCCACCAACGCAATAAACTTCTCTACGTAATGTTTTTGG
GTTATAATCAGTTTGTACCAATTGGTCTGTATGTTGCAAATATACCACTG
ATGTGATCAACACATCAATTGCAATAGTGATCAAAATCACGAAATAGGTT
TTTGAGTTATTGATGAATAGATCGCGTTTGGAGAACCGATATTTTGAGTT
GAAGATTGAGATCAGCTTCTCTGATTTAGCaaggagaaatgaaaaagtca
tagtgaagatagggcttaaCACGAAATAGTAAACATGACACNGAAAAAGT
catagtgaagatagggcttaaTACGAAATAGTAAACATGACATTGTAGAG
AATTCGTTTCACCAACTACAACGTATACTGAGACAAGAAATAAAACCAGT
TGAACGTGAATTTGGAATAATGAGAAATTGATATCCATTGCACGTACAAA
TCTCCTTGTTCTGTATGCCATAATCAATAATATTAAGCCTACAGATAAGC
ATATACCAGTTACTGTAACCACCAAGAAAACAATATACATTTCTTTAAAA
TCACTCATTAGAGCATCTTCAAATACTAAACATTCTTTACCATCAGCTTT
GGAGTAGTTTGACTGACATTGATGACATTGTTCAAGGCCTTGTTTCTCTT
TGGCAAAGCCTGGTTTACACTTTTGACATATCCAACAACAATTTGGACCA
ATATCCCTGAAAGGTTGTTCACCAGCACCACATACACTGGAGCAAGTGCT
TCTCAATTCAGATTGATCATAGATATCTTTTGCAATCCAGTGTGTTCCAT
TATTAGGATAAATCAATTCTCCTTTATCAGTCCTGGCAACTTCTTTGAAT
CTGATGACAGTTTGTGGATCTCTGAAAATATCATATACTCTGAAATGTGG
ATAGTTCAAAGCACCGAATTCATTAAAACCAATAGACTCATCTTCAAGTC
CCTTAAATGAGACAGGTTTCAAATGATTCTCAAAATACTCTTTAATATCA
AATTCACACTTTTCATTCTTAACTGCATCGGNAAGGTACCAAGCTAATTA
TCAAATAATCACCGTCTTTGTaaaggtattttattgtttccattGGGTCA
CAATATACTGTGGTTGGATCAAGATTATGTGCTTGGTGCTGTCCAAAATA
AATCATTGAAAGGAAGATGGTGAAGTAGCAGGTTCTTGAGTCTTTCATGG
TGACAGAGCGTCTTTGTTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012039-exon-sc0000136-1491911889:542321..543154 | TCONS_00012039-exon-sc0000136-1491911889:542321..543154 | Clytia hemisphaerica | exon |
| TCONS_00012039-exon-sc0000136-1510915933:542321..543154 | TCONS_00012039-exon-sc0000136-1510915933:542321..543154 | Clytia hemisphaerica | exon |
| TCONS_00012039-exon-sc0000136-1575043694:542321..543154 | TCONS_00012039-exon-sc0000136-1575043694:542321..543154 | Clytia hemisphaerica | exon |
| TCONS_00012039-exon-sc0000136-1491911889:543207..544093 | TCONS_00012039-exon-sc0000136-1491911889:543207..544093 | Clytia hemisphaerica | exon |
| TCONS_00012039-exon-sc0000136-1510915933:543207..544093 | TCONS_00012039-exon-sc0000136-1510915933:543207..544093 | Clytia hemisphaerica | exon |
| TCONS_00012039-exon-sc0000136-1575043694:543207..544093 | TCONS_00012039-exon-sc0000136-1575043694:543207..544093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:542321..544093 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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