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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012031 ID=TCONS_00012031|Name=TCONS_00012031|organism=Clytia hemisphaerica|type=transcript|length=1132bp
AAAAAGTATTTGAACAACACACGTGGTAAATTTGCATCAAAATACACAAA
CTTTGAAGAGGATCACAACATAACTAATGCGGAAGAAAATGAAAGGAAGG
GAATTTCAATTTCCCACAGAAGGAGAGTTTGTTGAACAACACACGTGGTA
AATTTGCATCAAAATACACAAACTTTAAGAAGAATTACAACATAACTAAT
GCGGAAGAAAATGAAAGGAAGAGAATTTCAATTTCCCACTGAAGGAGAGT
TAGAGATGACCATATAAGGATTGTTTTGAACAAGACCAAGTCTCTAGCAC
AGTGTTTTTCCAAAGATGGCTGAGAACCTATATAAAGTGTGGTGCAAAGA
ATCTATAAATCATTCCTTCATCGCTTTTTTTTCTGTCATCTAAATTTAAA
AGgcaAAAGATCGTGAAAAATGAAGACATCCTTGGCGTTTTTATTCGCTG
TTTTGGCTTGTGCAAGCGCGACCAACCTTTTGAGAGTAAGGACAGTCACA
AGAGTGTACACATCTTCCTATCGCATCATCAAGACACCAGAAACATGGAT
CAATGCACAAAAGAAATGCAGAGCTTGTGGTGGAAACCTTGCTACCATCA
CAAACTCAAATGATCATGCTTATTTGGCTTTTCAATTAAAgaaaatgaaa
attaagtcTGCATGGGTTGGTTTAAAcgacattaaaaaagaaaagacctT
TGTATGGGTAGCCGGTATTTCCGCTTTCGGTGGAAAATCTGGTTACAAAA
AATGGTGCCCCAAAGAACCAAACAACAATGGAAACGAGGATTGTGTGGAA
CTCATTGCCAGCCATAAAGCAGGACCTTGTTTGAACGACCTCCGTTGTTC
ATTCTCGAAACACAAACGAGGATATATTTGCGAGATCGATGCCTCCAGGA
CAACACAAGATGTAATTGTTTAGGAGAATACTCTTGTACTTTTAATGACG
TTtattctgaaaaatatttttagacctacctcggaggtccttaaatttaa
cctttgttcgtccgttcgttcgtccatCCCTTCTTCTGTCCGTTCATTAG
TTAACAGCTTTTCTCGGGCATGGcccattatttttttctaattttctgca
TTGTTATGCAGTacccaaaaagtgacggagcc Run BLAST on NCBI protein sequence of TCONS_00012031-protein >TCONS_00012031-protein ID=TCONS_00012031-protein|Name=TCONS_00012031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MKTSLAFLFAVLACASATNLLRVRTVTRVYTSSYRIIKTPETWINAQKKC
RACGGNLATITNSNDHAYLAFQLKKMKIKSAWVGLNDIKKEKTFVWVAGI
SAFGGKSGYKKWCPKEPNNNGNEDCVELIASHKAGPCLNDLRCSFSKHKR
GYICEIDASRTTQDVIV Run BLAST on NCBI transcript from alignment at sc0000136:312305..314313+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012031 ID=TCONS_00012031|Name=TCONS_00012031|organism=Clytia hemisphaerica|type=transcript|length=2009bp|location=Sequence derived from alignment at sc0000136:312305..314313+ (Clytia hemisphaerica)
AAAAAGTATTTGAACAACACACGTGGTAAATTTGCATCAAAATACACAAA
CTTTGAAGAGGATCACAACATAACTAATGCGGAAGAAAATGAAAGGAAGG
GAATTTCAATTTCCCACAGAAGGAGAGTTTGTTGAACAACACACGTGGTA
AATTTGCATCAAAATACACAAACTTTAAGAAGAATTACAACATAACTAAT
GCGGAAGAAAATGAAAGGAAGAGAATTTCAATTTCCCACTGAAGGAGAGT
TAGAGATGACCATATAAGGATTGTTTTGAACAAGACCAAGTCTCTAGCAC
AGTGTTTTTCCAAAGATGGCTGAGAACCTATATAAAGTGTGGTGCAAAGA
ATCTATAAATCATTCCTTCATCGCTTTTTTTTCTGTCATCTAAATTTAAA
AGGTAAGCAGTGTTTTTAATACTTCTTTACTTCAATTTCAATGGTACATC
GACCATTATGTTATTCATGCCTgagatttattttgattttctttttcagg
caAAAGATCGTGAAAAATGAAGACATCCTTGGCGTTTTTATTCGCTGTTT
TGGCTTGTGCAAGCGCGACCAGTAAATTATTTTGTTCCTAAACTACCTTT
CATTAACTCTTTTACCATTTCCTTTCTTTTTCCTGAGAAATGATGCCAGA
ACCATGAGTATGGCTGTACCATTCAATATCCATACATGGGATGGACGTAC
TTTCTGAGGATTGATTTCTTGGAAATAGATCCTCCAGGACAaatggaaaa
attttatataaacGTGACCGAGTTATAAATACTACTTTGATTCTACCTTA
TTCCTCGAAACTTTCTTTGGAAAACTTCTGGAAATGCTCTTCCACGTATT
AAATTGTtctaatagatcttatcggagttttcagatttttctaaataagc
gatgcattgtgtgattgtttcgggagtattacactAGAATTCCCtcattc
ctaagagatttctattgtaatactctcaaaacaatcccacaatgcattgt
cgcttttttagaaaaatcaaaaactccgatatgACAGGATATGATCTATT
GTTTCCTCTCATTCGATATCGATCATTTAATGTTCATTATATTGCAGACC
TTTTGAGAGTAAGGACAGTCACAAGAGTGTACACATCTTCCTATCGCATC
ATCAAGACACCAGAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTG
TGGTGGAAACCTTGCTACCATCACAAACTCAAATGATCATGCTTATTTGG
CTTTTCAATTAAAGTGAGTTTGAACTTTTGTCTTCTCGCGAATAGAAAAT
TCCGAGTTACTTTTCCATTCATCGGCCTCGCTAGTTCGTTTTGCCATACT
TTTGGAAATGATTTTCGTATGAGGTTTCGTATAAAACTGGCATATTTTCC
GAATTCAATAAGTTCGGTTGCTTCAATTCACTTTCTCAGAgactttgact
ttttttttgactttatatAAAACACTTCTATGGTAGAACTCTTACAATGA
CACTTTTTTTACTtcaggaaaatgaaaattaagtcTGCATGGGTTGGTTT
AAAcgacattaaaaaagaaaagacctTTGTATGGGTAGCCGGTATTTCCG
CTTTCGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCAAAC
AACAATGGAAACGAGGATTGTGTGGAACTCATTGCCAGCCATAAAGCAGG
ACCTTGTTTGAACGACCTCCGTTGTTCATTCTCGAAACACAAACGAGGAT
ATATTTGCGAGATCGATGCCTCCAGGACAACACAAGATGTAATTGTTTAG
GAGAATACTCTTGTACTTTTAATGACGTTtattctgaaaaatatttttag
acctacctcggaggtccttaaatttaacctttgttcgtccgttcgttcgt
ccatCCCTTCTTCTGTCCGTTCATTAGTTAACAGCTTTTCTCGGGCATGG
cccattatttttttctaattttctgcaTTGTTATGCAGTacccaaaaagt
gacggagcc Coding sequence (CDS) from alignment at sc0000136:312305..314313+ >TCONS_00012031 ID=TCONS_00012031|Name=TCONS_00012031|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000136:312305..314313+ (Clytia hemisphaerica)
ATGAAGACATCCTTGGCGTTTTTATTCGCTGTTTTGGCTTGTGCAAGCGC
GACCAACCTTTTGAGAGTAAGGACAGTCACAAGAGTGTACACATCTTCCT
ATCGCATCATCAAGACACCAGAAACATGGATCAATGCACAAAAGAAATGC
AGAGCTTGTGGTGGAAACCTTGCTACCATCACAAACTCAAATGATCATGC
TTATTTGGCTTTTCAATTAAAgaaaatgaaaattaagtcTGCATGGGTTG
GTTTAAAcgacattaaaaaagaaaagacctTTGTATGGGTAGCCGGTATT
TCCGCTTTCGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACC
AAACAACAATGGAAACGAGGATTGTGTGGAACTCATTGCCAGCCATAAAG
CAGGACCTTGTTTGAACGACCTCCGTTGTTCATTCTCGAAACACAAACGA
GGATATATTTGCGAGATCGATGCCTCCAGGACAACACAAGATGTAATTGT
TTAGATGAAGACATCCTTGGCGTTTTTATTCGCTGTTTTGGCTTGTGCAA
GCGCGACCAACCTTTTGAGAGTAAGGACAGTCACAAGAGTGTACACATCT
TCCTATCGCATCATCAAGACACCAGAAACATGGATCAATGCACAAAAGAA
ATGCAGAGCTTGTGGTGGAAACCTTGCTACCATCACAAACTCAAATGATC
ATGCTTATTTGGCTTTTCAATTAAAgaaaatgaaaattaagtcTGCATGG
GTTGGTTTAAAcgacattaaaaaagaaaagacctTTGTATGGGTAGCCGG
TATTTCCGCTTTCGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAG
AACCAAACAACAATGGAAACGAGGATTGTGTGGAACTCATTGCCAGCCAT
AAAGCAGGACCTTGTTTGAACGACCTCCGTTGTTCATTCTCGAAACACAA
ACGAGGATATATTTGCGAGATCGATGCCTCCAGGACAACACAAGATGTAA
TTGTTTAGATGAAGACATCCTTGGCGTTTTTATTCGCTGTTTTGGCTTGT
GCAAGCGCGACCAACCTTTTGAGAGTAAGGACAGTCACAAGAGTGTACAC
ATCTTCCTATCGCATCATCAAGACACCAGAAACATGGATCAATGCACAAA
AGAAATGCAGAGCTTGTGGTGGAAACCTTGCTACCATCACAAACTCAAAT
GATCATGCTTATTTGGCTTTTCAATTAAAgaaaatgaaaattaagtcTGC
ATGGGTTGGTTTAAAcgacattaaaaaagaaaagacctTTGTATGGGTAG
CCGGTATTTCCGCTTTCGGTGGAAAATCTGGTTACAAAAAATGGTGCCCC
AAAGAACCAAACAACAATGGAAACGAGGATTGTGTGGAACTCATTGCCAG
CCATAAAGCAGGACCTTGTTTGAACGACCTCCGTTGTTCATTCTCGAAAC
ACAAACGAGGATATATTTGCGAGATCGATGCCTCCAGGACAACACAAGAT
GTAATTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012031-exon-sc0000136-1491911889:312305..312706 | TCONS_00012031-exon-sc0000136-1491911889:312305..312706 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1510915933:312305..312706 | TCONS_00012031-exon-sc0000136-1510915933:312305..312706 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1575043694:312305..312706 | TCONS_00012031-exon-sc0000136-1575043694:312305..312706 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1491911889:312804..312875 | TCONS_00012031-exon-sc0000136-1491911889:312804..312875 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1510915933:312804..312875 | TCONS_00012031-exon-sc0000136-1510915933:312804..312875 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1575043694:312804..312875 | TCONS_00012031-exon-sc0000136-1575043694:312804..312875 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1491911889:313402..313567 | TCONS_00012031-exon-sc0000136-1491911889:313402..313567 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1510915933:313402..313567 | TCONS_00012031-exon-sc0000136-1510915933:313402..313567 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1575043694:313402..313567 | TCONS_00012031-exon-sc0000136-1575043694:313402..313567 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1491911889:313822..314313 | TCONS_00012031-exon-sc0000136-1491911889:313822..314313 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1510915933:313822..314313 | TCONS_00012031-exon-sc0000136-1510915933:313822..314313 | Clytia hemisphaerica | exon |
| TCONS_00012031-exon-sc0000136-1575043694:313822..314313 | TCONS_00012031-exon-sc0000136-1575043694:313822..314313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:312305..314313 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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