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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012028 ID=TCONS_00012028|Name=TCONS_00012028|organism=Clytia hemisphaerica|type=transcript|length=2994bpRun BLAST on NCBI protein sequence of TCONS_00012028-protein >TCONS_00012028-protein ID=TCONS_00012028-protein|Name=TCONS_00012028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp MPELQKLQQLKDDQGELSSADEKRFKTLKSSAEKELLQHADVICTTCIGARun BLAST on NCBI transcript from alignment at sc0000136:250824..260749+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012028 ID=TCONS_00012028|Name=TCONS_00012028|organism=Clytia hemisphaerica|type=transcript|length=9926bp|location=Sequence derived from alignment at sc0000136:250824..260749+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000136:250824..260749+ >TCONS_00012028 ID=TCONS_00012028|Name=TCONS_00012028|organism=Clytia hemisphaerica|type=CDS|length=19668bp|location=Sequence derived from alignment at sc0000136:250824..260749+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012028 vs. Swiss-Prot (Human)
Match: RENT1 (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2) HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0 Identity = 460/702 (65.53%), Postives = 533/702 (75.93%), Query Frame = 2
Query: 215 RFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSASIVYHLAKQNLGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLAAKSREAIDSPVSHLALHNQVRNIETMPEXXXXXXXXXXXGELSSADEKRFKTLKSSAEKELLQHADVICTTCIGAGDPRLRMAKLRFRCVLIDESTQATEPECMVPIVHGTKQLILVGDHCQLGPVVMCKKAASAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSEFPSNLFYDGTLQNGVTVGERSQTDVDFPWPVADKPMFFYATTGQEEISSSGTSYLNRTEAATVEKIATRFLRAGIKPEQMGIITPYEGQRAYIVSYMQFSGSLHATLYQSIEVASVDAFQGREKDFIIMSCARSNEHQGIGFLKDPRRLNVALTRSKYGLIIVGNPKVLSKQPLWNHLLNDYKEKRVLVEGPLNNLKESVIQFSKPRKLVNRSNPGGRFMSNTTFDAREALIAPGMYANRPV--RPHVDPVMDSYYRTHDRMNFFPPGPDXVMDSYYRTHDRMNFFPPGPDQARNAFAANIPIPVGMFMSPMPPPAAY-QFN----------HQMVRPGQHRQRMPMXXXXXXXXXXXXYSSNRPSAGSNSNNANQDLSQGPLSQGPLSQGPP--LTQGGMSQNMXXXXXXXXXXXXXXDSYLGDDFQLKSQADQVLSQDSSYQGDRGGYH 2275
RF+A GLP+LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA+IVYHLA+Q G VLVCAPSNIAVDQLTEKIH+TGLKVVRL AKSREAIDSPVS LALHNQ+RN+++MPELQKLQQLKD+ GELSSADEKR++ LK +AE+ELL +ADVIC TC+GAGDPRL AK++FR +LIDESTQATEPECMVP+V G KQLILVGDHCQLGPVVMCKKAA AGLSQSLFERLVVLGIRPIRLQVQYRMHPALS FPSN+FY+G+LQNGVT +R + DF WP DKPMFFY T GQEEI+SSGTSYLNRTEAA VEKI T+ L+AG KP+Q+GIITPYEGQR+Y+V YMQFSGSLH LYQ +E+ASVDAFQGREKDFII+SC R+NEHQGIGFL DPRRLNVALTR++YG+IIVGNPK LSKQPLWNHLLN YKE++VLVEGPLNNL+ES++QFSKPRKLVN NPG RFM+ +DAREA+I PG +R RP Y++THD++ GP V A NIPIP + M PMPPP + Q N + R G+ + R + +N P++ ++ + A+Q SQG L+QG +S P ++Q G+SQ PELSQDSYLGD+F KSQ D LSQDS+YQG+R H
Sbjct: 473 RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRL--AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAII-PGSVYDRSSQGRPS-----SMYFQTHDQIGMISAGPSHVA------------------------AMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPS---------QTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQ-----------PELSQDSYLGDEF--KSQIDVALSQDSTYQGERAYQH 1120 The following BLAST results are available for this feature:
BLAST of TCONS_00012028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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