TCONS_00012026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012026
Unique NameTCONS_00012026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012026 ID=TCONS_00012026|Name=TCONS_00012026|organism=Clytia hemisphaerica|type=transcript|length=547bp
aattATGACGAAGACTTAACAGTGcacaAAAGTAAAGTTCAACAAACAGA
ATGACAACACTTTTTCGGAATTTCTGGAGGATAGTTCAATCACCATTATA
TCAAAGACAAAACAATCTTCTTTTACCAAAGAACTGTCTCTTTACCACGC
CATCTTCCCTTGGAGTCAGATTACCACCAAAAGATGCtgacaaaaagaag
aagaagaatccgTTGGTTGTTGCCGAATTAAAGAATGATACAAATACAGA
ATTTCATGAACTACCCATAGTCCTCATCAAGGCTACTTTTAACAATACCT
TAGTCTACTTGACTGACCATAAAGGAACTATGGCAACGTGGACATCAGCT
GGTATAGAAGGATTTAAGAACGCCAAACGTGGAACCAATTATGCTGGTAA
AGTTGCTGGTGAAAGCATGGCCAAGGTAAAACTTGCTTTCTCAATTCAAA
CTTTATTGTTTCAGCATGACTCAAAAAAAATGTCCGATCAAGCTGTTTTT
TtggaatgaaaattttgatttttgggactGATAAGTAGCAATTATTT
Run BLAST on NCBI

transcript from alignment at sc0000136:177949..179361+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012026 ID=TCONS_00012026|Name=TCONS_00012026|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0000136:177949..179361+ (Clytia hemisphaerica)
aattATGACGAAGACTTAACAGTGcacagtatatttttgtaaacttgaaa
caaatttttagtatagaatttttgactgaagatcgTAGCGAAAGCTGGCT
CTTATGTAAAAAGAGTATGTACTGTATTTTAAGTTTAACTTTATAATATA
AATTTACACAGTCCCATTCACTTTTAGAAAGTAAAGTTCAACAAACAGAA
TGACAACACTTTTTCGGAATTTCTGGAGGATAGTTCAATCACCATTATAT
CAAAGACAAAACAATCTTCTTTTACCAAAGAACTGTCTCTTTACCACGCC
ATCTTCCCTTGGAGTCAGATTACCACCAAAGTAAGGATAaagtttttatt
tgtactcctatgGGGAACTTGgtttaaaaacaattaaattatGGTCATTT
TGATGGGTCATAAGTTCTTGCTTCTTCTTGCTGAATTTTATCCtgctttt
tgataaatatttataaaagattttacTATTTCATTCTCTTGTAGTGTAAG
TAAGTCtgttgaagatcgaattagagagagaaagGTATCTATTATTTCAT
TCTGTTGTTTCAGAGATGCtgacaaaaagaagaagaagaatccgTTGGTT
GTTGCCGAATTAAAGAATGATACAAATACAGAATTTCATGAACTACCCAT
AGTCCTCATCAAGGCTACTTTTAACAATACCTTAGTCTACTTGACTGACC
ATAAAGGTAAGTAAAAAATGTGCTTCACcttaattttgttatttttaagt
ttttgtaaGGGAAGCTAAAGCTACCAAAGAATTGTAAATTttgtcagaaa
aaaattaaattcctgccaaatttaattcATTCATTTTAGAAGAAAGTCTT
ACCATTAACAGGTGGACTgcattttgaaaattagttttttttgtgtaAGA
TTCGACCTATCTTCTAATTCGTCTTTTGACACTTTAGTTTCACCTTTCCT
CTacttttatcctaaatattcggTCGCTagttattcatgatatttattCT
CATATGGTTTATCTTAGGAACTATGGCAACGTGGACATCAGCTGTAAGTA
GCCATCTCCTGAATCAAATACTTAAATGAAATGACTGTGATATTTGATGT
TAGTTCTGCCCGGTTTCCGTATGCTTTAAAGGATTGCTAGATGTTTTATC
CATTCCATTTGGTGACCCTTATCTATGTGAGAGAAATTAATGGAAGTTAT
ATTTTCTTGTATTCAGGGTATAGAAGGATTTAAGAACGCCAAACGTGGAA
CCAATTATGCTGGTAAAGTTGCTGGTGAAAGCATGGCCAAGGTAAAACTT
GCTTTCTCAATTCAAACTTTATTGTTTCAGCATGACTCAAAAAAAATGTC
CGATCAAGCTGTTTTTTtggaatgaaaattttgatttttgggactGATAA
GTAGCAATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006758XLOC_006758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012026-exon-sc0000136-1491911889:177949..177976TCONS_00012026-exon-sc0000136-1491911889:177949..177976Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1510915933:177949..177976TCONS_00012026-exon-sc0000136-1510915933:177949..177976Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1575043694:177949..177976TCONS_00012026-exon-sc0000136-1575043694:177949..177976Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1491911889:178126..178278TCONS_00012026-exon-sc0000136-1491911889:178126..178278Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1510915933:178126..178278TCONS_00012026-exon-sc0000136-1510915933:178126..178278Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1575043694:178126..178278TCONS_00012026-exon-sc0000136-1575043694:178126..178278Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1491911889:178512..178654TCONS_00012026-exon-sc0000136-1491911889:178512..178654Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1510915933:178512..178654TCONS_00012026-exon-sc0000136-1510915933:178512..178654Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1575043694:178512..178654TCONS_00012026-exon-sc0000136-1575043694:178512..178654Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1491911889:178966..178991TCONS_00012026-exon-sc0000136-1491911889:178966..178991Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1510915933:178966..178991TCONS_00012026-exon-sc0000136-1510915933:178966..178991Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1575043694:178966..178991TCONS_00012026-exon-sc0000136-1575043694:178966..178991Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1491911889:179165..179361TCONS_00012026-exon-sc0000136-1491911889:179165..179361Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1510915933:179165..179361TCONS_00012026-exon-sc0000136-1510915933:179165..179361Clytia hemisphaericaexon
TCONS_00012026-exon-sc0000136-1575043694:179165..179361TCONS_00012026-exon-sc0000136-1575043694:179165..179361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:177949..179361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.6921	10.476	7.49518	0.323814	13.8388	0.0127069	6.6664	8.16132	26.9363	22.7266	13.5516	16.9427	7.93253	10.8938	15.6534	6.60087	24.0039	31.6996	2.23529	0.716122	13.5618	4.83128	13.1662	9.83276	6.17944	7.74782	5.90577	0.00486848	14.2598	1.48766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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