TCONS_00012018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012018
Unique NameTCONS_00012018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012018 ID=TCONS_00012018|Name=TCONS_00012018|organism=Clytia hemisphaerica|type=transcript|length=2290bp
ACTAAAATCACTCATCACTTCGCACGCAACGAGAAACAACCACACTATCT
GCATGACTGCGTCTAGTCGATAGAGAAAAGAGGAGTTTGTggaaatcaaa
ttttctatACTACATTCCTATCTCTCTACGTAACAGCATATTACATTATT
ACACTATTACTACAACACAAAAATCATTATGCACATCAGTACACAGCACT
CGACCAACATTATGAATTTGTTTAAATGGTTGTTCGGTAAACGTAAGGAG
CGTAATCACCAAATCCAATACCAAGAGAAGACAGTCAAAATTCTTTGCAT
GGGTAAAGAACGGGTCGGTAAAACAGCGGTTATACAGAAACTCTGCAACC
AAGAAGATTTTAGTGATACTCACACACCGACGTTGTACGATGACCATTTA
AAACAAGTCATTGTTGACGAGTATAACGTTACAATGCAATTCATGGATTT
GGGAGGATCACAAAATTTCCCGTCAATGCAGCAAGTGTTTATCCAACAGG
CTGATATTTATATACTGTTTTACTCTGTAGATGATGCCGACAGCTTTACg
caaatgttgaaatatagaGACCAGATCTCATCAATCAAAGGCAAGCATTC
GACTGAACTGCCTCTGATGGTTGTTCGTAATAAGACAGACTTGAAACAGA
AGCGTTTGAGAAAGGAGATCGAGCGCCGGAAAACTATCCCCCAATGGTGT
GGTAAAGTTTATGATGTCTCCGCTAAGACAGGACTTAAAATTAATGCTAT
TATGGATAGTCTGATTGAAGAGTCTAAATTCATCGGTAATGAAAAGAACT
TGGGAAATTTGAAAGTCAGTGGTCGGTATATTTTTGACGACGACGGTAAA
CGAGTATTCTCGGCTTCTGAGGTTTACCATAAAGCACCGACTCTTTTCGG
TGAGAAGGACAATTCGGATGAGAAAATGGAGAAACGTCGGCGACGTAGCA
TGAATCAGCCGTCTCGTAGAATGACACGTGCATTGACTCGCTCACTATCT
CTGGGACCAATGAGACGACGTCCTCTTTCACAAGCAACAGACAGTAAAGA
GAATAAAGACGTTTGTACTAAACAACCTTGGATGAAAGAAGTCGAAGAAA
CCGAACGTGCTAACTCAATTAATCGAGATGACGAGAAAACTGCATCGCTC
AGAAGTGCGAATTCTATCGAACAATCACCTAGAAACTCGATTAATAAAGC
AGACTCTAAAGAATCgattgtttcaaataaacgaaGAGATTCGCCGAAAG
ATACGAAAAAGGCTTCAGCGGACGTCCACAAGCCGCCTACTAATGAATCG
GGTGAGTCGAGTTCTGTCGGAGATGTAAAATCGAATTCACTCGATACTAA
CACTCAGCGTAAAAGAAGTACTTTCAAAATGGCGGGAAAGAAAGCGTCTT
TCGATGAAGTCGTACCCAGTCCAATACGGCCACGTTTGCAACGTAAGAAA
AGTCTCAGTCACACGGACATCAATCTTTTGGCTCCAGATATGCGTAACCG
TAGCGCGAGTGCAAATTCGTCGTTACCCAGAATACGTAAAGTTTCATCGT
TTCGTAAAGAGAAACCAAAGCTAGAGATTGTTCATACCACGTTACGTTCT
GAAGACACGGAAGAAAACGTCCCGTTTCTCGCACAACGTCAATACGGCCG
TTCCGTGTCTATAAGCTCACGGGAATCAAGAGAATCGTTTTCCAAGCCGG
CAAAGAAATTATCTCTCGGACGCCGTCTCTCGACGTCTATTGACTGTATA
AGCGATGGAGAATTTGATAATAATTCTAATGATGACGCACCAGTACCAGG
CCTTTTGACGACGCGACGTCGTAGTTTGAGCCAGAACGACTTATCGTTAT
CAATTCAGACATTTAACAATAAATTTCAACGTGGCGGGAAGATGTTTGAG
GAACGAAACTTTTTTGGGAAACGAAAGTCCAAGAACAATAAGAATAACTC
GTTACCGGCAAAAATAACTGACAACGTCGCGCAACAGATAAATTCGCAAC
CCGGTGTCGTGAATCGACGTTCACGCTCAATTTCTCTTTACCGTAAGAAA
CTTCCCATACAGACGGCAATCGTGGAAGAACTAGACGACTCAACACCGTC
ACGGCAACGACGTCGTAAAATGAGTAGCAGTGTCGGTAATCTAGTCGACG
ACCGACCGGCGTCGTACGacgaaaacaaaaactttttggcATCCATCAAA
TCGAAACCTGTTTCTCTTAAGGAAGAGGATACTCTAGACGGAACGCCGAT
AACCTTTGCAAAACTCTCAAATTAAAAACTTTGACACTCA
Run BLAST on NCBI

protein sequence of TCONS_00012018-protein

>TCONS_00012018-protein ID=TCONS_00012018-protein|Name=TCONS_00012018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp
MHISTQHSTNIMNLFKWLFGKRKERNHQIQYQEKTVKILCMGKERVGKTA
VIQKLCNQEDFSDTHTPTLYDDHLKQVIVDEYNVTMQFMDLGGSQNFPSM
QQVFIQQADIYILFYSVDDADSFTQMLKYRDQISSIKGKHSTELPLMVVR
NKTDLKQKRLRKEIERRKTIPQWCGKVYDVSAKTGLKINAIMDSLIEESK
FIGNEKNLGNLKVSGRYIFDDDGKRVFSASEVYHKAPTLFGEKDNSDEKM
EKRRRRSMNQPSRRMTRALTRSLSLGPMRRRPLSQATDSKENKDVCTKQP
WMKEVEETERANSINRDDEKTASLRSANSIEQSPRNSINKADSKESIVSN
KRRDSPKDTKKASADVHKPPTNESGESSSVGDVKSNSLDTNTQRKRSTFK
MAGKKASFDEVVPSPIRPRLQRKKSLSHTDINLLAPDMRNRSASANSSLP
RIRKVSSFRKEKPKLEIVHTTLRSEDTEENVPFLAQRQYGRSVSISSRES
RESFSKPAKKLSLGRRLSTSIDCISDGEFDNNSNDDAPVPGLLTTRRRSL
SQNDLSLSIQTFNNKFQRGGKMFEERNFFGKRKSKNNKNNSLPAKITDNV
AQQINSQPGVVNRRSRSISLYRKKLPIQTAIVEELDDSTPSRQRRRKMSS
SVGNLVDDRPASYDENKNFLASIKSKPVSLKEEDTLDGTPITFAKLSN
Run BLAST on NCBI

transcript from alignment at sc0000134:447462..449751

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012018 ID=TCONS_00012018|Name=TCONS_00012018|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at sc0000134:447462..449751 (Clytia hemisphaerica)
TGAGTGTCAAAGTTTTTAATTTGAGAGTTTTGCAAAGGTTATCGGCGTTC
CGTCTAGAGTATCCTCTTCCTTAAGAGAAACAGGTTTCGATTTGATGGAT
gccaaaaagtttttgttttcgtCGTACGACGCCGGTCGGTCGTCGACTAG
ATTACCGACACTGCTACTCATTTTACGACGTCGTTGCCGTGACGGTGTTG
AGTCGTCTAGTTCTTCCACGATTGCCGTCTGTATGGGAAGTTTCTTACGG
TAAAGAGAAATTGAGCGTGAACGTCGATTCACGACACCGGGTTGCGAATT
TATCTGTTGCGCGACGTTGTCAGTTATTTTTGCCGGTAACGAGTTATTCT
TATTGTTCTTGGACTTTCGTTTCCCAAAAAAGTTTCGTTCCTCAAACATC
TTCCCGCCACGTTGAAATTTATTGTTAAATGTCTGAATTGATAACGATAA
GTCGTTCTGGCTCAAACTACGACGTCGCGTCGTCAAAAGGCCTGGTACTG
GTGCGTCATCATTAGAATTATTATCAAATTCTCCATCGCTTATACAGTCA
ATAGACGTCGAGAGACGGCGTCCGAGAGATAATTTCTTTGCCGGCTTGGA
AAACGATTCTCTTGATTCCCGTGAGCTTATAGACACGGAACGGCCGTATT
GACGTTGTGCGAGAAACGGGACGTTTTCTTCCGTGTCTTCAGAACGTAAC
GTGGTATGAACAATCTCTAGCTTTGGTTTCTCTTTACGAAACGATGAAAC
TTTACGTATTCTGGGTAACGACGAATTTGCACTCGCGCTACGGTTACGCA
TATCTGGAGCCAAAAGATTGATGTCCGTGTGACTGAGACTTTTCTTACGT
TGCAAACGTGGCCGTATTGGACTGGGTACGACTTCATCGAAAGACGCTTT
CTTTCCCGCCATTTTGAAAGTACTTCTTTTACGCTGAGTGTTAGTATCGA
GTGAATTCGATTTTACATCTCCGACAGAACTCGACTCACCCGATTCATTA
GTAGGCGGCTTGTGGACGTCCGCTGAAGCCTTTTTCGTATCTTTCGGCGA
ATCTCttcgtttatttgaaacaatcGATTCTTTAGAGTCTGCTTTATTAA
TCGAGTTTCTAGGTGATTGTTCGATAGAATTCGCACTTCTGAGCGATGCA
GTTTTCTCGTCATCTCGATTAATTGAGTTAGCACGTTCGGTTTCTTCGAC
TTCTTTCATCCAAGGTTGTTTAGTACAAACGTCTTTATTCTCTTTACTGT
CTGTTGCTTGTGAAAGAGGACGTCGTCTCATTGGTCCCAGAGATAGTGAG
CGAGTCAATGCACGTGTCATTCTACGAGACGGCTGATTCATGCTACGTCG
CCGACGTTTCTCCATTTTCTCATCCGAATTGTCCTTCTCACCGAAAAGAG
TCGGTGCTTTATGGTAAACCTCAGAAGCCGAGAATACTCGTTTACCGTCG
TCGTCAAAAATATACCGACCACTGACTTTCAAATTTCCCAAGTTCTTTTC
ATTACCGATGAATTTAGACTCTTCAATCAGACTATCCATAATAGCATTAA
TTTTAAGTCCTGTCTTAGCGGAGACATCATAAACTTTACCACACCATTGG
GGGATAGTTTTCCGGCGCTCGATCTCCTTTCTCAAACGCTTCTGTTTCAA
GTCTGTCTTATTACGAACAACCATCAGAGGCAGTTCAGTCGAATGCTTGC
CTTTGATTGATGAGATCTGGTCtctatatttcaacatttgcGTAAAGCTG
TCGGCATCATCTACAGAGTAAAACAGTATATAAATATCAGCCTGTTGGAT
AAACACTTGCTGCATTGACGGGAAATTTTGTGATCCTCCCAAATCCATGA
ATTGCATTGTAACGTTATACTCGTCAACAATGACTTGTTTTAAATGGTCA
TCGTACAACGTCGGTGTGTGAGTATCACTAAAATCTTCTTGGTTGCAGAG
TTTCTGTATAACCGCTGTTTTACCGACCCGTTCTTTACCCATGCAAAGAA
TTTTGACTGTCTTCTCTTGGTATTGGATTTGGTGATTACGCTCCTTACGT
TTACCGAACAACCATTTAAACAAATTCATAATGTTGGTCGAGTGCTGTGT
ACTGATGTGCATAATGATTTTTGTGTTGTAGTAATAGTGTAATAATGTAA
TATGCTGTTACGTAGAGAGATAGGAATGTAGTatagaaaatttgatttcc
ACAAACTCCTCTTTTCTCTATCGACTAGACGCAGTCATGCAGATAGTGTG
GTTGTTTCTCGTTGCGTGCGAAGTGATGAGTGATTTTAGT

Coding sequence (CDS) from alignment at sc0000134:447462..449751

>TCONS_00012018 ID=TCONS_00012018|Name=TCONS_00012018|organism=Clytia hemisphaerica|type=CDS|length=2097bp|location=Sequence derived from alignment at sc0000134:447462..449751 (Clytia hemisphaerica)
TTAATTTGAGAGTTTTGCAAAGGTTATCGGCGTTCCGTCTAGAGTATCCT
CTTCCTTAAGAGAAACAGGTTTCGATTTGATGGATgccaaaaagtttttg
ttttcgtCGTACGACGCCGGTCGGTCGTCGACTAGATTACCGACACTGCT
ACTCATTTTACGACGTCGTTGCCGTGACGGTGTTGAGTCGTCTAGTTCTT
CCACGATTGCCGTCTGTATGGGAAGTTTCTTACGGTAAAGAGAAATTGAG
CGTGAACGTCGATTCACGACACCGGGTTGCGAATTTATCTGTTGCGCGAC
GTTGTCAGTTATTTTTGCCGGTAACGAGTTATTCTTATTGTTCTTGGACT
TTCGTTTCCCAAAAAAGTTTCGTTCCTCAAACATCTTCCCGCCACGTTGA
AATTTATTGTTAAATGTCTGAATTGATAACGATAAGTCGTTCTGGCTCAA
ACTACGACGTCGCGTCGTCAAAAGGCCTGGTACTGGTGCGTCATCATTAG
AATTATTATCAAATTCTCCATCGCTTATACAGTCAATAGACGTCGAGAGA
CGGCGTCCGAGAGATAATTTCTTTGCCGGCTTGGAAAACGATTCTCTTGA
TTCCCGTGAGCTTATAGACACGGAACGGCCGTATTGACGTTGTGCGAGAA
ACGGGACGTTTTCTTCCGTGTCTTCAGAACGTAACGTGGTATGAACAATC
TCTAGCTTTGGTTTCTCTTTACGAAACGATGAAACTTTACGTATTCTGGG
TAACGACGAATTTGCACTCGCGCTACGGTTACGCATATCTGGAGCCAAAA
GATTGATGTCCGTGTGACTGAGACTTTTCTTACGTTGCAAACGTGGCCGT
ATTGGACTGGGTACGACTTCATCGAAAGACGCTTTCTTTCCCGCCATTTT
GAAAGTACTTCTTTTACGCTGAGTGTTAGTATCGAGTGAATTCGATTTTA
CATCTCCGACAGAACTCGACTCACCCGATTCATTAGTAGGCGGCTTGTGG
ACGTCCGCTGAAGCCTTTTTCGTATCTTTCGGCGAATCTCttcgtttatt
tgaaacaatcGATTCTTTAGAGTCTGCTTTATTAATCGAGTTTCTAGGTG
ATTGTTCGATAGAATTCGCACTTCTGAGCGATGCAGTTTTCTCGTCATCT
CGATTAATTGAGTTAGCACGTTCGGTTTCTTCGACTTCTTTCATCCAAGG
TTGTTTAGTACAAACGTCTTTATTCTCTTTACTGTCTGTTGCTTGTGAAA
GAGGACGTCGTCTCATTGGTCCCAGAGATAGTGAGCGAGTCAATGCACGT
GTCATTCTACGAGACGGCTGATTCATGCTACGTCGCCGACGTTTCTCCAT
TTTCTCATCCGAATTGTCCTTCTCACCGAAAAGAGTCGGTGCTTTATGGT
AAACCTCAGAAGCCGAGAATACTCGTTTACCGTCGTCGTCAAAAATATAC
CGACCACTGACTTTCAAATTTCCCAAGTTCTTTTCATTACCGATGAATTT
AGACTCTTCAATCAGACTATCCATAATAGCATTAATTTTAAGTCCTGTCT
TAGCGGAGACATCATAAACTTTACCACACCATTGGGGGATAGTTTTCCGG
CGCTCGATCTCCTTTCTCAAACGCTTCTGTTTCAAGTCTGTCTTATTACG
AACAACCATCAGAGGCAGTTCAGTCGAATGCTTGCCTTTGATTGATGAGA
TCTGGTCtctatatttcaacatttgcGTAAAGCTGTCGGCATCATCTACA
GAGTAAAACAGTATATAAATATCAGCCTGTTGGATAAACACTTGCTGCAT
TGACGGGAAATTTTGTGATCCTCCCAAATCCATGAATTGCATTGTAACGT
TATACTCGTCAACAATGACTTGTTTTAAATGGTCATCGTACAACGTCGGT
GTGTGAGTATCACTAAAATCTTCTTGGTTGCAGAGTTTCTGTATAACCGC
TGTTTTACCGACCCGTTCTTTACCCATGCAAAGAATTTTGACTGTCTTCT
CTTGGTATTGGATTTGGTGATTACGCTCCTTACGTTTACCGAACAACCAT
TTAAACAAATTCATAATGTTGGTCGAGTGCTGTGTACTGATGTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006752XLOC_006752Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012018-proteinTCONS_00012018-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012018-exon-sc0000134-1491911889:447462..449751TCONS_00012018-exon-sc0000134-1491911889:447462..449751Clytia hemisphaericaexon
TCONS_00012018-exon-sc0000134-1510915933:447462..449751TCONS_00012018-exon-sc0000134-1510915933:447462..449751Clytia hemisphaericaexon
TCONS_00012018-exon-sc0000134-1575043694:447462..449751TCONS_00012018-exon-sc0000134-1575043694:447462..449751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:447462..449751 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221629	0.132999	0.25094	0.264391	4.34525	2.79781	10.5647	11.4911	4.75527	6.01473	3.47174	5.2002	36.3395	33.7001	8.1027	7.66695	11.2112	14.2065	54.1873	55.7169	13.5493	10.2751	6.3138	10.0053	5.69258	7.18784	1.72988	0.648656	9.82073	10.0058
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00012018 vs. Swiss-Prot (Human)
Match: RALB (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.576e-17
Identity = 44/162 (27.16%), Postives = 92/162 (56.79%), Query Frame = 2 
Query:  287 KILCMGKERVGKTAVIQKLCNQEDFSDTHTPTLYDDHLKQVIVDEYNVTMQFMDLGGSQNFPSMQQVFIQQADIYILFYSVDDADSFTQMLKYRDQISSIKGKHSTELPLMVVRNKTDLKQKRLRKEIERRKTIPQWCGKVYDVSAKTGLKINAIMDSLIEE 772
            K++ +G   VGK+A+  +    E F + + PT  D + K+V++D   V +  +D  G +++ +++  + +  + ++L +S+ + +SFT   ++R+QI  +K +   ++PL+VV NK+DL+++R     E R    +W  +  + SAKT   ++ +   L+ E
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED-KIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMRE 175
The following BLAST results are available for this feature:
BLAST of TCONS_00012018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RALB2.576e-1727.16Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
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